FFCP PHASE1:Hg19::chr4:54930790..54930838,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:54930790..54930838,-
|short_description=p2@CHIC2
|description=CAGE_peak_2_at_CHIC2_5end
|association_with_transcript=0bp_to_NM_012110_5end
|EntrezGene=265...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26511 | |EntrezGene=26511 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1935 | |HGNC=1935 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKJ5 | |UniProt=Q9UKJ5 | ||
|association_with_transcript=0bp_to_NM_012110_5end | |||
|cluster_id=chr4:54930790..54930838,- | |||
|description=CAGE_peak_2_at_CHIC2_5end | |||
|id=chr4:54930790..54930838,- | |||
|ontology_enrichment_celltype=CL:0002057!2.02e-23!42;CL:0000766!1.39e-21!76;CL:0000839!4.76e-20!70;CL:0000860!1.97e-19!45;CL:0000557!2.05e-19!71;CL:0002009!3.57e-19!65;CL:0002194!7.02e-19!63;CL:0000576!7.02e-19!63;CL:0000040!7.02e-19!63;CL:0000559!7.02e-19!63;CL:0000763!8.71e-09!112;CL:0000049!8.71e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.32e-18;33!CL:0002057;7.32e-18;33!CL:0000576;5.21e-15;48!CL:0000473;1.40e-14;39!CL:0000234;1.40e-14;39!CL:0000766;6.86e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.87e-24,72;CL:0000860,2.02e-23,42;CL:0002057,2.02e-23,42;CL:0000839,6.11e-23,66;CL:0000473,6.74e-23,48;CL:0000234,6.74e-23,48;CL:0000557,3.27e-22,67;CL:0002009,3.94e-22,61;CL:0002194,7.14e-22,59;CL:0000576,7.14e-22,59;CL:0000040,7.14e-22,59;CL:0000559,7.14e-22,59;CL:0000763,5.72e-10,108;CL:0000049,5.72e-10,108;CL:0000048,4.74e-07,427;CL:0000723,5.86e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.99e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.73e-20!216;UBERON:0002371!2.08e-17!80;UBERON:0002193!1.04e-16!112;UBERON:0001474!1.04e-16!86;UBERON:0002390!1.50e-16!102;UBERON:0003061!1.50e-16!102;UBERON:0000468!2.58e-15!659;UBERON:0004765!3.88e-14!101;UBERON:0001434!3.88e-14!101;UBERON:0002204!4.77e-14!167;UBERON:0000467!1.83e-13!625;UBERON:0000480!3.85e-13!626;UBERON:0002405!2.99e-12!115;UBERON:0000479!1.47e-10!787;UBERON:0002050!9.40e-10!605;UBERON:0005423!9.40e-10!605;UBERON:0000923!1.35e-09!604;UBERON:0005291!1.35e-09!604;UBERON:0006598!1.35e-09!604;UBERON:0002532!1.35e-09!604;UBERON:0000062!4.86e-09!511;UBERON:0000922!1.30e-08!612;UBERON:0000926!5.21e-08!448;UBERON:0004120!5.21e-08!448;UBERON:0006603!5.21e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.93e-22,203;UBERON:0002371,8.76e-20,76;UBERON:0001474,6.68e-19,82;UBERON:0002193,1.52e-18,108;UBERON:0002390,1.73e-18,98;UBERON:0003061,1.73e-18,98;UBERON:0002405,3.12e-17,93;UBERON:0000926,7.79e-17,315;UBERON:0004120,7.79e-17,315;UBERON:0006603,7.79e-17,315;UBERON:0004765,5.32e-16,90;UBERON:0001434,5.83e-15,100;UBERON:0002204,1.09e-14,167;UBERON:0000479,4.74e-11,773;UBERON:0000923,1.02e-10,560;UBERON:0010316,1.02e-10,560;UBERON:0005291,1.02e-10,560;UBERON:0006598,1.02e-10,560;UBERON:0010317,1.02e-10,560;UBERON:0002532,1.02e-10,560;UBERON:0002050,1.60e-10,564;UBERON:0005423,4.79e-10,581;UBERON:0000922,1.54e-09,592 | |||
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| ||
|short_description=p2@CHIC2 | |||
}} | }} |
Latest revision as of 00:40, 18 September 2015
Short description: | p2@CHIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHIC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_012110_5end |
EntrezGene: | CHIC2 |
HGNC: | 1935 |
UniProt: | Q9UKJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.87e-24 | 72 |
classical monocyte | 2.02e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.02e-23 | 42 |
myeloid lineage restricted progenitor cell | 6.11e-23 | 66 |
defensive cell | 6.74e-23 | 48 |
phagocyte | 6.74e-23 | 48 |
granulocyte monocyte progenitor cell | 3.27e-22 | 67 |
macrophage dendritic cell progenitor | 3.94e-22 | 61 |
monopoietic cell | 7.14e-22 | 59 |
monocyte | 7.14e-22 | 59 |
monoblast | 7.14e-22 | 59 |
promonocyte | 7.14e-22 | 59 |
myeloid cell | 5.72e-10 | 108 |
common myeloid progenitor | 5.72e-10 | 108 |
multi fate stem cell | 4.74e-07 | 427 |
somatic stem cell | 5.86e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.93e-22 | 203 |
bone marrow | 8.76e-20 | 76 |
bone element | 6.68e-19 | 82 |
hemolymphoid system | 1.52e-18 | 108 |
hematopoietic system | 1.73e-18 | 98 |
blood island | 1.73e-18 | 98 |
immune system | 3.12e-17 | 93 |
mesoderm | 7.79e-17 | 315 |
mesoderm-derived structure | 7.79e-17 | 315 |
presumptive mesoderm | 7.79e-17 | 315 |
skeletal element | 5.32e-16 | 90 |
skeletal system | 5.83e-15 | 100 |
musculoskeletal system | 1.09e-14 | 167 |
tissue | 4.74e-11 | 773 |
germ layer | 1.02e-10 | 560 |
germ layer / neural crest | 1.02e-10 | 560 |
embryonic tissue | 1.02e-10 | 560 |
presumptive structure | 1.02e-10 | 560 |
germ layer / neural crest derived structure | 1.02e-10 | 560 |
epiblast (generic) | 1.02e-10 | 560 |
embryonic structure | 1.60e-10 | 564 |
developing anatomical structure | 4.79e-10 | 581 |
embryo | 1.54e-09 | 592 |