FFCP PHASE1:Hg19::chr7:27212501..27212513,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3206 | |EntrezGene=3206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5100 | |HGNC=5100 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000519593,ENST00000521421_5end | |association_with_transcript=0bp_to_ENST00000519593,ENST00000521421_5end | ||
|cluster_id=chr7:27212501..27212513,- | |||
|description=CAGE_peak_5_at_HOXA10_5end | |description=CAGE_peak_5_at_HOXA10_5end | ||
|id=chr7:27212501..27212513,- | |id=chr7:27212501..27212513,- | ||
|ontology_enrichment_celltype=CL:0002620!3.57e-13!23;CL:0000499!1.03e-07!27;CL:0002540!2.26e-07!6 | |ontology_enrichment_celltype=CL:0002620!3.57e-13!23;CL:0000499!1.03e-07!27;CL:0002540!2.26e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002540;3.46e-14;6!CL:0002092;9.12e-13;10!CL:0000650;3.15e-11;2!CL:1000500;3.15e-11;2!CL:1000618;3.15e-11;2!CL:1001318;3.15e-11;2!CL:0002173;3.15e-11;2!CL:0002620;7.75e-10;23!CL:0002564;1.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,2.28e-14,6;CL:0002092,5.17e-13,10;CL:0000650,5.26e-11,2;CL:1000500,5.26e-11,2;CL:1000618,5.26e-11,2;CL:1001318,5.26e-11,2;CL:0002173,5.26e-11,2;CL:0002620,8.18e-10,23;CL:0002564,2.27e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.88e-09;5!DOID:450;1.88e-09;5!DOID:66;1.88e-09;5!DOID:423;1.88e-09;5!DOID:0080000;1.88e-09;5!DOID:11722;1.88e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.92e-09,5;DOID:450,1.92e-09,5;DOID:66,1.92e-09,5;DOID:423,1.92e-09,5;DOID:0080000,1.92e-09,5;DOID:11722,1.92e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0001008!1.06e-10!45;UBERON:0006554!6.48e-10!44;UBERON:0003064!3.24e-08!37;UBERON:0002199!7.86e-08!45;UBERON:0002416!7.86e-08!45;UBERON:0000162!2.72e-07!14;UBERON:0001353!2.72e-07!14;UBERON:0000163!2.72e-07!14;UBERON:0006866!2.72e-07!14;UBERON:0000164!2.72e-07!14;UBERON:0000931!2.72e-07!14;UBERON:0002113!6.84e-07!27;UBERON:0003918!6.84e-07!27;UBERON:0005095!6.84e-07!27;UBERON:0007687!6.84e-07!27;UBERON:0002384!8.62e-07!375 | |ontology_enrichment_uberon=UBERON:0001008!1.06e-10!45;UBERON:0006554!6.48e-10!44;UBERON:0003064!3.24e-08!37;UBERON:0002199!7.86e-08!45;UBERON:0002416!7.86e-08!45;UBERON:0000162!2.72e-07!14;UBERON:0001353!2.72e-07!14;UBERON:0000163!2.72e-07!14;UBERON:0006866!2.72e-07!14;UBERON:0000164!2.72e-07!14;UBERON:0000931!2.72e-07!14;UBERON:0002113!6.84e-07!27;UBERON:0003918!6.84e-07!27;UBERON:0005095!6.84e-07!27;UBERON:0007687!6.84e-07!27;UBERON:0002384!8.62e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0002371;7.16e-15;12!UBERON:0004765;3.25e-14;26!UBERON:0003567;3.15e-11;2!UBERON:0003838;3.15e-11;2!UBERON:0003586;3.15e-11;2!UBERON:0005169;3.15e-11;2!UBERON:0002321;3.15e-11;2!UBERON:0005215;3.15e-11;2!UBERON:0002303;3.15e-11;2!UBERON:0002319;3.15e-11;2!UBERON:0001474;1.03e-09;18!UBERON:0011135;1.88e-09;5!UBERON:0002216;1.88e-09;5!UBERON:0011134;1.88e-09;5!UBERON:0002209;1.88e-09;5!UBERON:0002213;1.88e-09;5!UBERON:0007844;1.88e-09;5!UBERON:0011138;1.88e-09;5!UBERON:0001130;1.88e-09;5!UBERON:0001066;1.88e-09;5!UBERON:0001468;1.88e-09;5!UBERON:0001434;1.59e-07;36!UBERON:0002242;1.63e-07;3!UBERON:0006834;9.27e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,5.26e-11,2;UBERON:0003838,5.26e-11,2;UBERON:0003586,5.26e-11,2;UBERON:0005169,5.26e-11,2;UBERON:0002321,5.26e-11,2;UBERON:0005215,5.26e-11,2;UBERON:0002303,5.26e-11,2;UBERON:0002319,5.26e-11,2;UBERON:0011135,1.75e-09,5;UBERON:0002216,1.75e-09,5;UBERON:0011134,1.75e-09,5;UBERON:0002209,1.75e-09,5;UBERON:0002213,1.75e-09,5;UBERON:0005856,1.75e-09,5;UBERON:0005866,1.75e-09,5;UBERON:0005863,1.75e-09,5;UBERON:0007844,1.75e-09,5;UBERON:0011138,1.75e-09,5;UBERON:0001130,1.75e-09,5;UBERON:0001066,1.75e-09,5;UBERON:0001468,1.75e-09,5;UBERON:0002242,2.27e-07,3;UBERON:0003068,2.27e-07,3;UBERON:0002328,2.27e-07,3;UBERON:0004880,2.27e-07,3;UBERON:0006834,9.30e-07,1 | |||
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| ||
|short_description=p5@HOXA10 | |short_description=p5@HOXA10 | ||
}} | }} |
Latest revision as of 01:52, 18 September 2015
Short description: | p5@HOXA10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXA10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000519593, ENST00000521421_5end |
EntrezGene: | HOXA10 |
HGNC: | 5100 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 2.28e-14 | 6 |
bone marrow cell | 5.17e-13 | 10 |
mesangial cell | 5.26e-11 | 2 |
kidney interstitial cell | 5.26e-11 | 2 |
juxtaglomerular complex cell | 5.26e-11 | 2 |
renal interstitial pericyte | 5.26e-11 | 2 |
extraglomerular mesangial cell | 5.26e-11 | 2 |
skin fibroblast | 8.18e-10 | 23 |
nucleus pulposus cell of intervertebral disc | 2.27e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 5.26e-11 | 2 |
abdominal segment connective tissue | 5.26e-11 | 2 |
trunk connective tissue | 5.26e-11 | 2 |
interstitial tissue | 5.26e-11 | 2 |
extraglomerular mesangium | 5.26e-11 | 2 |
kidney interstitium | 5.26e-11 | 2 |
juxtaglomerular apparatus | 5.26e-11 | 2 |
mesangium | 5.26e-11 | 2 |
intervertebral cartilage | 1.75e-09 | 5 |
symphysis | 1.75e-09 | 5 |
nonsynovial joint | 1.75e-09 | 5 |
fibrous joint | 1.75e-09 | 5 |
cartilaginous joint | 1.75e-09 | 5 |
developing mesenchymal condensation | 1.75e-09 | 5 |
pre-cartilage condensation | 1.75e-09 | 5 |
cartilaginous condensation | 1.75e-09 | 5 |
cartilage element | 1.75e-09 | 5 |
post-cranial axial skeletal system | 1.75e-09 | 5 |
vertebral column | 1.75e-09 | 5 |
intervertebral disk | 1.75e-09 | 5 |
intervertebral joint | 1.75e-09 | 5 |
nucleus pulposus | 2.27e-07 | 3 |
axial mesoderm | 2.27e-07 | 3 |
notochord | 2.27e-07 | 3 |
chordamesoderm | 2.27e-07 | 3 |
uterus or analog | 9.30e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.92e-09 | 5 |
myotonic disease | 1.92e-09 | 5 |
muscle tissue disease | 1.92e-09 | 5 |
myopathy | 1.92e-09 | 5 |
muscular disease | 1.92e-09 | 5 |
myotonic dystrophy | 1.92e-09 | 5 |