FFCP PHASE1:Hg19::chr15:67418119..67418162,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z9Q2,P84022 | |||
|association_with_transcript=65bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | |||
|cluster_id=chr15:67418119..67418162,+ | |||
|coexpression_cluster_id=C2343 | |||
|description=CAGE_peak_5_at_SMAD3_5end | |||
|id=chr15:67418119..67418162,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.11e-23!254;CL:0000222!5.95e-16!119;CL:0000220!3.34e-15!246;CL:0002321!1.17e-14!248;CL:0000183!1.91e-13!59;CL:0000192!2.45e-13!42;CL:0000514!2.45e-13!42;CL:0000359!1.20e-12!32;CL:0000187!1.67e-12!54;CL:0000680!4.26e-12!57;CL:0000056!4.26e-12!57;CL:0000355!4.26e-12!57;CL:0000548!5.05e-12!679;CL:0000004!5.05e-12!679;CL:0000255!5.05e-12!679;CL:0000012!1.88e-11!682;CL:0000055!1.50e-10!180;CL:0000393!2.19e-09!60;CL:0000211!2.19e-09!60;CL:0000076!2.11e-08!62;CL:0000077!9.87e-08!19 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.40e-13;32!CL:0000077;9.01e-11;19!CL:0000192;3.66e-09;43!CL:0002494;2.28e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.31e-23,253;CL:0000359,3.20e-14,32;CL:0000192,4.95e-12,43;CL:0000514,4.95e-12,43;CL:0002321,2.09e-11,250;CL:0000222,2.27e-11,121;CL:0000077,9.94e-11,19;CL:0000187,7.97e-09,55;CL:0000680,1.74e-08,58;CL:0000056,1.74e-08,58;CL:0000355,1.74e-08,58;CL:0000076,6.10e-08,63;CL:0002494,2.18e-07,16;CL:0000393,4.45e-07,61;CL:0000211,4.45e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;3.66e-09;43!UBERON:0008947;1.65e-07;29 | |||
|ontology_enrichment_disease=DOID:305!8.36e-11!106;DOID:0050687!2.35e-08!143;DOID:1749!5.97e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.78e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.98e-16,106;DOID:0050687,2.20e-12,143;DOID:1749,1.55e-08,14;DOID:162,1.51e-07,235;DOID:14566,5.72e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000481!9.75e-21!347;UBERON:0003104!2.51e-20!238;UBERON:0009142!2.51e-20!238;UBERON:0004119!9.43e-17!169;UBERON:0000925!9.43e-17!169;UBERON:0006595!9.43e-17!169;UBERON:0002100!1.14e-15!216;UBERON:0005256!1.63e-15!143;UBERON:0003914!7.58e-15!118;UBERON:0001048!1.57e-14!168;UBERON:0001007!1.94e-14!155;UBERON:0001555!1.94e-14!155;UBERON:0007026!1.94e-14!155;UBERON:0000477!2.61e-14!286;UBERON:0000119!4.08e-14!312;UBERON:0000483!1.64e-13!309;UBERON:0000486!2.77e-13!82;UBERON:0000490!2.89e-13!138;UBERON:0000475!3.48e-12!365;UBERON:0000914!3.86e-12!83;UBERON:0002329!3.86e-12!83;UBERON:0003077!3.86e-12!83;UBERON:0003059!3.86e-12!83;UBERON:0007282!3.86e-12!83;UBERON:0009618!3.86e-12!83;UBERON:0007285!3.86e-12!83;UBERON:0000077!8.90e-12!130;UBERON:0001637!9.13e-12!42;UBERON:0003509!9.13e-12!42;UBERON:0004572!9.13e-12!42;UBERON:0002049!3.22e-11!79;UBERON:0007798!3.22e-11!79;UBERON:0001004!1.11e-10!72;UBERON:0005911!1.40e-10!82;UBERON:0001134!1.50e-10!61;UBERON:0002036!1.50e-10!61;UBERON:0003082!1.50e-10!61;UBERON:0001981!1.55e-10!60;UBERON:0007500!1.55e-10!60;UBERON:0004537!1.55e-10!60;UBERON:0006965!1.55e-10!60;UBERON:0004573!2.15e-10!33;UBERON:0004571!2.15e-10!33;UBERON:0004872!2.31e-10!84;UBERON:0002385!5.06e-10!63;UBERON:0001015!5.06e-10!63;UBERON:0000383!5.06e-10!63;UBERON:0001041!7.81e-10!98;UBERON:0004290!7.96e-10!70;UBERON:0000055!8.17e-10!69;UBERON:0000065!2.56e-09!53;UBERON:0000072!3.67e-09!46;UBERON:0004111!7.01e-09!241;UBERON:0004921!8.64e-09!129;UBERON:0004185!8.64e-09!129;UBERON:0008947!4.36e-08!38;UBERON:0003258!4.36e-08!38;UBERON:0004535!7.34e-08!110;UBERON:0001444!8.30e-08!48;UBERON:0005157!1.04e-07!51;UBERON:0001009!1.43e-07!113;UBERON:0000926!1.48e-07!448;UBERON:0004120!1.48e-07!448;UBERON:0006603!1.48e-07!448;UBERON:0000467!2.28e-07!625;UBERON:0000480!3.18e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.47e-10;33!UBERON:0004571;7.47e-10;33!UBERON:0001637;4.36e-09;42!UBERON:0003509;4.36e-09;42!UBERON:0004572;4.36e-09;42!UBERON:0005911;8.34e-09;36!UBERON:0000072;1.60e-08;37!UBERON:0001737;1.63e-08;9!UBERON:0001557;1.63e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.21e-14,117;UBERON:0004119,8.25e-14,160;UBERON:0000925,8.25e-14,160;UBERON:0006595,8.25e-14,160;UBERON:0001637,2.24e-13,42;UBERON:0003509,2.24e-13,42;UBERON:0004572,2.24e-13,42;UBERON:0001048,6.50e-13,160;UBERON:0005911,1.82e-12,82;UBERON:0001007,5.19e-12,145;UBERON:0001555,5.19e-12,145;UBERON:0007026,5.19e-12,145;UBERON:0004573,1.77e-11,33;UBERON:0004571,1.77e-11,33;UBERON:0000072,2.55e-11,47;UBERON:0001004,7.16e-11,74;UBERON:0002100,7.33e-11,199;UBERON:0000065,3.28e-10,54;UBERON:0000119,3.88e-10,309;UBERON:0000483,8.94e-10,306;UBERON:0004872,1.69e-09,83;UBERON:0005256,1.89e-09,122;UBERON:0007500,1.99e-09,59;UBERON:0001981,1.99e-09,59;UBERON:0004537,1.99e-09,59;UBERON:0006965,1.99e-09,59;UBERON:0008947,3.71e-09,38;UBERON:0003258,3.71e-09,38;UBERON:0002049,4.44e-09,78;UBERON:0007798,4.44e-09,78;UBERON:0000490,6.14e-09,148;UBERON:0000486,6.51e-09,83;UBERON:0001737,1.82e-08,9;UBERON:0004111,5.23e-08,240;UBERON:0004535,5.32e-08,109;UBERON:0001557,5.50e-08,19;UBERON:0001041,5.65e-08,87;UBERON:0000055,6.58e-08,68;UBERON:0003104,1.41e-07,160;UBERON:0009142,1.41e-07,160;UBERON:0001009,1.94e-07,112;UBERON:0000033,2.02e-07,56;UBERON:0001134,2.38e-07,62;UBERON:0002036,2.38e-07,62;UBERON:0003082,2.38e-07,62;UBERON:0005157,5.89e-07,47;UBERON:0003929,6.19e-07,54;UBERON:0004807,6.40e-07,28;UBERON:0000153,7.48e-07,62;UBERON:0007811,7.48e-07,62;UBERON:0002385,7.60e-07,64;UBERON:0001015,7.60e-07,64;UBERON:0000383,7.60e-07,64;UBERON:0004921,7.62e-07,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0.261185628199839,3.19454117451962,2.79120467188971,0.218441372130172,0.527533956456907,1.11389717664042,0.994192127183747,2.6893005858071,1.80808358407193,1.46062018077475,0.487932798790507,2.21617904538218,0.612002073732759,0.313454721478088,0,0,0.251085279189606,0,0,0,0.393364276848904,0,0,1.83884244895785,4.2168828628955,0.739508020333575,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0.436194716338694,0,0,0.464858073811369,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0,0.329851300186716,0,0,0.870627715885752,0,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,1.15076305659177,1.80719576192283,0.50133791063589,0.869079113764942,0,0.973269740605272,1.03988298880475,1.33037638477538,0.351339142772504,0,2.91436230634034,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0.838998872419812,0,0,1.29208379584664,0.35576626268671,1.00416183829401,0.805658634218294,2.28081631715554,0,0.367663080345869,0,0.625098097988558,0,0.675668882899933,0,0,0.366403487860815,0,0,0.872188104285069,0,3.67228483827281,4.237093786023,3.44203944898576,7.4480360261655,0,11.7423895302675,8.38669664618344,0.933633106199299,1.0776853765575,1.9615428373615,0.151357427644931,0,3.04617861383936,2.18512053781224,0.570471821544449,0.448346041655403,0.587172493218824,0.809364721840658,0.280901613404497,1.22492502752936,0.982674538494144,1.13658359293342,1.18800285728205,2.47266929278557,0,0,0.505008341862199,1.37630371859161,2.49357703935765,0.877955241761676,1.22595118319608,2.10333282469236,2.7223723958405,0.179389635688862,0.85422955527427,0.635795703478686,0,0.515262646192195,0,0.18611685633159,0.168776332241266,0,0,0.0920498986422993,9.21382523867228,0,0.10075209822764,1.18692414617341,2.12586938479627,2.72746120590835,5.73609190778008,0,0,0,0,0,0,0,0,0,0.928735856063958,1.44375896333917,6.15195360207188,3.87744787179634,6.26628677697053,5.4044046638873,4.35758888184812,4.03360052488864,3.7752766284846,4.12065076763227,3.07797725557112,1.4763109092493,2.80483547606892,3.2925920906512,4.41026134156626,0,0,0,0,0.245976877086227,1.88724591328378,0.878002283269004,0,0.502644862058154,1.11106134190236,2.6064664424826,11.4392826380754,1.44331342025273,0,0.352226082707465,0.288732895522148,0.925971025153221,0.570762456703795,7.11183958163348,8.58486162094873,0,0,0,2.81201501960331,0.839910640994298,2.1266264586358,2.32852159027406,1.45316969256981,0.766765358330422,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,1.23344192779897,2.1798003441664,0.66004457238855,1.29271715757778,0,0,0,0,1.02882949704857,1.41849132023278,0.799266537048298,1.71573592389777,0.542621605391443,0,0.325736184293735,1.06617584622764,0,3.91871190177462,0,2.29937879718731,0,0,0,0.479249710983165,0,0,0.289562613335158,1.2328579353023,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59498939234882,3.00102312635806,1.35632511849868,2.07970861530807,1.78428988797162,0.315404830067869,1.28855556491985,0.902838299183157,0,1.03473071292505,1.99267679560631,0.184369168541703,0.434418072340414,0.783204629850962,1.02943027143257,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0.532685175939381,0.657017248110473,1.55776328755086,0.232420756919918,0,7.61924587152482,0.368323955743585,1.14814448164607,0.910455840033585,4.85160335349869,0.902399225814824,0.847168708148562,1.56869953835371,0,1.37217117560738,1.13733384070897,2.38131187387122,0.647747748306418,0,1.08378575017541,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0,0,0,2.29610251989794,0.325378394664303,0,0.0915694648183434,0,3.44559322797703,0.650060246036521,0,0.290012154876366,0.616194468458578,0.460511024178389,0.413509717453592,0.644521469209642,0.580066775656914,0.170453254832202,0.267096106940212,0.330569830721956,1.53752053892085,4.08360679982669,0.6069466851333,2.32422774648643,0.62962469366128,9.7585217822484,6.46870518369786,6.38767236380426,11.3091288969759,3.52116016297448,2.28999818787186,0,1.2655176988749,0.38126038784765,1.535386747868,0,6.68226820644467,3.13979456079692,0.719489830333259,0,0.117812402345686,8.8960291892259,9.5106192703805,3.79132610615083,4.8763373908959,1.46228093778771,2.11300293513511,0.818999468447914,1.55545975149084,2.26016233240486,4.96228809191512,9.28814565337708,4.38450885253763,2.31510213706675,0.655894752046633,2.84074527747786,5.88664646389525,3.3803472303869,0.860468113224309,0.294747123039363,4.9933947207375,0.709522128141196,0.844430541190656,0.658589785919804,6.83051712778287,10.8479763275945,1.53955380360819,6.70302275535787,0,0.0941438007767792,7.31859133541091,10.1082885400575,3.99087138183008,2.52695740227655,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0.684704037099577,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,0,0.222886768554957,1.70481688083848,0,2.375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| |||
|short_description=p5@SMAD3 | |||
}} |
Latest revision as of 17:17, 18 September 2015
Short description: | p5@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMAD3_5end |
Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
Association with transcript: | 65bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z9Q2P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.31e-23 | 253 |
vascular associated smooth muscle cell | 3.20e-14 | 32 |
smooth muscle cell | 4.95e-12 | 43 |
smooth muscle myoblast | 4.95e-12 | 43 |
embryonic cell | 2.09e-11 | 250 |
mesodermal cell | 2.27e-11 | 121 |
mesothelial cell | 9.94e-11 | 19 |
muscle cell | 7.97e-09 | 55 |
muscle precursor cell | 1.74e-08 | 58 |
myoblast | 1.74e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.74e-08 | 58 |
squamous epithelial cell | 6.10e-08 | 63 |
cardiocyte | 2.18e-07 | 16 |
electrically responsive cell | 4.45e-07 | 61 |
electrically active cell | 4.45e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.98e-16 | 106 |
cell type cancer | 2.20e-12 | 143 |
squamous cell carcinoma | 1.55e-08 | 14 |
cancer | 1.51e-07 | 235 |
disease of cellular proliferation | 5.72e-07 | 239 |