FFCP PHASE1:Hg19::chr1:62902537..62902560,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:62902537..62902560,+
|short_description=p6@USP1
|description=CAGE_peak_6_at_USP1_5end
|association_with_transcript=154bp_to_NM_003368,uc001dal.1_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7398 | |EntrezGene=7398 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12607 | |HGNC=12607 | ||
|TSSclassifier=strong | |||
|UniProt=O94782 | |UniProt=O94782 | ||
|association_with_transcript=154bp_to_NM_003368,uc001dal.1_5end | |||
|cluster_id=chr1:62902537..62902560,+ | |||
|description=CAGE_peak_6_at_USP1_5end | |||
|id=chr1:62902537..62902560,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.38e-50!172;CL:0000566!1.38e-50!172;CL:0002032!5.99e-48!165;CL:0000837!5.99e-48!165;CL:0000988!1.32e-45!182;CL:0000763!2.78e-40!112;CL:0000049!2.78e-40!112;CL:0000738!1.01e-37!140;CL:0002031!1.63e-34!124;CL:0002087!8.70e-32!119;CL:0000766!4.02e-30!76;CL:0000557!1.66e-28!71;CL:0000839!5.11e-28!70;CL:0002009!3.14e-26!65;CL:0000860!9.33e-26!45;CL:0002194!2.50e-25!63;CL:0000576!2.50e-25!63;CL:0000040!2.50e-25!63;CL:0000559!2.50e-25!63;CL:0002057!1.14e-24!42;CL:0000219!7.28e-11!390;CL:0000134!8.75e-11!358;CL:0002320!1.84e-09!365;CL:0000063!2.65e-08!578;CL:0000542!7.72e-08!53;CL:0000051!7.72e-08!53;CL:0000838!1.90e-07!52;CL:0002393!4.49e-07!9;CL:0002397!4.49e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.33e-30;33!CL:0002057;1.33e-30;33!CL:0000473;9.61e-28;39!CL:0000234;9.61e-28;39!CL:0000576;1.62e-27;48!CL:0000766;2.80e-22;69!CL:0000763;2.76e-19;100!CL:0000738;4.44e-10;136!CL:0000988;1.01e-09;177!CL:0002087;1.54e-09;104!CL:0002393;4.98e-09;6!CL:0002397;4.98e-09;6!CL:0000094;1.85e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,3.61e-63,108;CL:0000049,3.61e-63,108;CL:0000037,2.21e-60,168;CL:0002032,2.95e-58,161;CL:0000837,2.95e-58,161;CL:0000988,9.96e-56,177;CL:0000766,7.87e-53,72;CL:0000839,1.51e-47,66;CL:0000557,4.90e-47,67;CL:0002009,2.36e-46,61;CL:0002194,4.77e-46,59;CL:0000576,4.77e-46,59;CL:0000040,4.77e-46,59;CL:0000559,4.77e-46,59;CL:0000473,6.10e-46,48;CL:0000234,6.10e-46,48;CL:0000860,3.95e-45,42;CL:0002057,3.95e-45,42;CL:0000738,8.61e-45,136;CL:0002031,8.07e-40,120;CL:0002087,1.37e-37,115;CL:0000134,1.74e-15,354;CL:0002320,1.20e-14,361;CL:0002393,4.28e-13,9;CL:0002397,4.28e-13,9;CL:0000219,3.21e-12,386;CL:0000034,5.63e-09,441;CL:0000094,1.34e-08,8;CL:0000048,2.46e-08,427;CL:0000723,2.91e-08,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.93e-32;42!CL:0000049;1.89e-18;108 | |||
|ontology_enrichment_disease=DOID:2531!1.87e-14!51;DOID:0060083!1.87e-14!51;DOID:162!3.77e-13!235;DOID:14566!1.78e-12!239;DOID:1240!2.22e-12!39;DOID:8692!5.47e-11!31;DOID:0050686!1.15e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.11e-12;31!DOID:1240;5.30e-10;39!DOID:2531;8.94e-07;51!DOID:0060083;8.94e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,9.94e-13,31;DOID:1240,1.63e-12,39;DOID:2531,7.70e-11,51;DOID:0060083,7.70e-11,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!4.78e-28!102;UBERON:0003061!4.78e-28!102;UBERON:0001474!3.30e-24!86;UBERON:0002371!8.95e-24!80;UBERON:0002193!7.63e-23!112;UBERON:0004765!1.58e-18!101;UBERON:0001434!1.58e-18!101;UBERON:0002405!1.73e-14!115;UBERON:0002384!3.23e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.40e-41,82;UBERON:0002371,2.43e-41,76;UBERON:0002390,4.77e-40,98;UBERON:0003061,4.77e-40,98;UBERON:0004765,3.39e-36,90;UBERON:0002193,1.93e-34,108;UBERON:0001434,1.05e-30,100;UBERON:0002405,1.75e-30,93;UBERON:0002384,5.17e-14,371;UBERON:0002204,1.58e-11,167;UBERON:0003081,2.89e-10,203 | |||
|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0.502170558379211,0.382067028739756,0.738905305049512,1.02324015707783,2.75354993794233,5.37361157336098,3.71558695958582,0.919421224478927,0,0,2.47895041856965,1.13735385989937,4.69760702935756,4.9859586767869,2.4065333696417,3.25516306073778,0.223915474239924,0,0.515151135268373,6.10672602874172,6.04601509902095,5.57943340731977,3.25400651667958,2.05583944010913,3.09706370895104,3.16461631554365,3.33008918487831,4.25668013799453,1.72372840368309,1.93645405075148,2.70852973188684,3.20011977222428,4.36649840092553,3.37085226667627,1.53041946185451,2.24650318953266,3.83602275479425,8.2462825046679,4.3882004676759,9.80316926225197,1.45104619314292,2.26954089876456,1.24564449799115,2.76373531782418,1.5644487552606,4.77815458351257,0.605399502633369,0.368277635987565,0.949387162322653,3.38008458099107,3.61427309940574,3.35453832813401,4.6054738770063,5.55654503513573,5.94684670779196,4.84521664360123,5.76858363877361,3.47061892152804,1.75996244461323,0.546138611262131,0,2.56038133539904,0.400395987036012,1.14950487990897,0,0.954053754535364,1.70763890732835,1.17447437874188,0.382273228125229,1.32171328579026,2.80254281490768,5.26768169550154,0.786839080455332,1.17903228824749,1.64481199199607,0.167186495390678,0.32592226663359,0,0,0.779873198196215,1.17842362989935,0,0.270803863765016,0.384273959177026,0.260118695119756,0.822189523018381,0.829050053357545,0.289803085735052,0,0.535081656179426,1.04535523804977,0.339928028092699,0,0.68725489096526,0,0,0,0.950452044448374,0,0.511946444617674,0,0.710331756132051,0.821127996921047,1.61285394579786,0.802320587350522,1.01377082717959,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0.283604451492204,0,0.087834785693126,0.196468613246569,0,0.370784442784429,1.62273696827342,1.74129737299267,1.99436940778298,0.238490624305342,1.14398982156026,1.48583000531826,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,3.87780264148325,0,0,0.506522046658319,0.132409180813219,0,0.709336764396714,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.375355559615893,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0.538168907066586,0.213557388818567,0.211931901159562,0,0.515262646192195,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0.67824236924195,0.193260853163297,0,0,0.121973706129595,0.397589304964456,0,0.10366105501537,0,0,0,0,0,0,0,1.53798840051797,1.85443159085912,2.16909926895134,1.8749975364507,1.74303555273925,0.474541238222193,0.808987848960987,1.56977172100277,0.38474715694639,0,0,0,0,0,0,0,0.882926198829301,0.368965315629341,0,0.219500570817251,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,1.58040879591855,0,1.23108503043699,1.17002132569619,1.93220510975347,0.93733833986777,0.16798212819886,0,1.61205340865127,2.03443756959773,0.383382679165211,0.492663237895943,0.616339038092582,2.48793738648926,2.30591925467138,0.75745460055828,0.380987365753014,0.381988425558278,0,0,0.411309970813294,0.600686115687835,0,0.112131084345361,0,0.51336800074665,0.258543431515556,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0.65147236858747,0,0,0.301439377059586,0.871533458600294,0,0,1.50677127429638,0,0.479249710983165,0,0,0,0,0,0.448340575974109,1.37921532141349,0.862510299438069,0.385029108839245,0.508189248444927,0,0.773288812777695,0,0,2.99602809578873,0,5.38740167466846,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0.664225598535437,0,0.173767228936166,0,0,1.24060815673732,0.215714200818617,0.74709290462411,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.410635780069046,0.519254429183621,0.232420756919918,1.0877350463246,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,1.54227252690289,0,0,0.254876273045038,0,0.223874754722178,3.28889814968902,2.0914836081992,0.512900250232778,0,0,0.206082023295445,1.00726411300178,1.40266149865,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0.137836572484531,0,0.290033387828457,0.340906509664404,0.178064071293475,0.495854746082934,0.192190067365106,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,0,0.409499734223957,0.282810863907425,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0,0,0,0.282431402330337,0,0,0,0,2.53723804616085,5.35246044999663,2.8482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|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0.502170558379211,0.382067028739756,0.738905305049512,1.02324015707783,2.75354993794233,5.37361157336098,3.71558695958582,0.919421224478927,0,0,2.47895041856965,1.13735385989937,4.69760702935756,4.9859586767869,2.4065333696417,3.25516306073778,0.223915474239924,0,0.515151135268373,6.10672602874172,6.04601509902095,5.57943340731977,3.25400651667958,2.05583944010913,3.09706370895104,3.16461631554365,3.33008918487831,4.25668013799453,1.72372840368309,1.93645405075148,2.70852973188684,3.20011977222428,4.36649840092553,3.37085226667627,1.53041946185451,2.24650318953266,3.83602275479425,8.2462825046679,4.3882004676759,9.80316926225197,1.45104619314292,2.26954089876456,1.24564449799115,2.76373531782418,1.5644487552606,4.77815458351257,0.605399502633369,0.368277635987565,0.949387162322653,3.38008458099107,3.61427309940574,3.35453832813401,4.6054738770063,5.55654503513573,5.94684670779196,4.84521664360123,5.76858363877361,3.47061892152804,1.75996244461323,0.546138611262131,0,2.56038133539904,0.400395987036012,1.14950487990897,0,0.954053754535364,1.70763890732835,1.17447437874188,0.382273228125229,1.32171328579026,2.80254281490768,5.26768169550154,0.786839080455332,1.17903228824749,1.64481199199607,0.167186495390678,0.32592226663359,0,0,0.779873198196215,1.17842362989935,0,0.270803863765016,0.384273959177026,0.260118695119756,0.822189523018381,0.829050053357545,0.289803085735052,0,0.535081656179426,1.04535523804977,0.339928028092699,0,0.68725489096526,0,0,0,0.950452044448374,0,0.511946444617674,0,0.710331756132051,0.821127996921047,1.61285394579786,0.802320587350522,1.01377082717959,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0.283604451492204,0,0.087834785693126,0.196468613246569,0,0.370784442784429,1.62273696827342,1.74129737299267,1.99436940778298,0.238490624305342,1.14398982156026,1.48583000531826,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,3.87780264148325,0,0,0.506522046658319,0.132409180813219,0,0.709336764396714,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.375355559615893,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0.538168907066586,0.213557388818567,0.211931901159562,0,0.515262646192195,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0.67824236924195,0.193260853163297,0,0,0.121973706129595,0.397589304964456,0,0.10366105501537,0,0,0,0,0,0,0,1.53798840051797,1.85443159085912,2.16909926895134,1.8749975364507,1.74303555273925,0.474541238222193,0.808987848960987,1.56977172100277,0.38474715694639,0,0,0,0,0,0,0,0.882926198829301,0.368965315629341,0,0.219500570817251,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,1.58040879591855,0,1.23108503043699,1.17002132569619,1.93220510975347,0.93733833986777,0.16798212819886,0,1.61205340865127,2.03443756959773,0.383382679165211,0.492663237895943,0.616339038092582,2.48793738648926,2.30591925467138,0.75745460055828,0.380987365753014,0.381988425558278,0,0,0.411309970813294,0.600686115687835,0,0.112131084345361,0,0.51336800074665,0.258543431515556,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0.65147236858747,0,0,0.301439377059586,0.871533458600294,0,0,1.50677127429638,0,0.479249710983165,0,0,0,0,0,0.448340575974109,1.37921532141349,0.862510299438069,0.385029108839245,0.508189248444927,0,0.773288812777695,0,0,2.99602809578873,0,5.38740167466846,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0.664225598535437,0,0.173767228936166,0,0,1.24060815673732,0.215714200818617,0.74709290462411,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.410635780069046,0.519254429183621,0.232420756919918,1.0877350463246,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,1.54227252690289,0,0,0.254876273045038,0,0.223874754722178,3.28889814968902,2.0914836081992,0.512900250232778,0,0,0.206082023295445,1.00726411300178,1.40266149865,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0.137836572484531,0,0.290033387828457,0.340906509664404,0.178064071293475,0.495854746082934,0.192190067365106,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,0,0.409499734223957,0.282810863907425,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0,0,0,0.282431402330337,0,0,0,0,2.53723804616085,5.35246044999663,2.8482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| ||
|short_description=p6@USP1 | |||
}} | }} |
Latest revision as of 20:04, 18 September 2015
Short description: | p6@USP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_USP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 154bp_to_NM_003368, uc001dal.1_5end |
EntrezGene: | USP1 |
HGNC: | 12607 |
UniProt: | O94782 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone element | 1.40e-41 | 82 |
bone marrow | 2.43e-41 | 76 |
hematopoietic system | 4.77e-40 | 98 |
blood island | 4.77e-40 | 98 |
skeletal element | 3.39e-36 | 90 |
hemolymphoid system | 1.93e-34 | 108 |
skeletal system | 1.05e-30 | 100 |
immune system | 1.75e-30 | 93 |
connective tissue | 5.17e-14 | 371 |
musculoskeletal system | 1.58e-11 | 167 |
lateral plate mesoderm | 2.89e-10 | 203 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 9.94e-13 | 31 |
leukemia | 1.63e-12 | 39 |
hematologic cancer | 7.70e-11 | 51 |
immune system cancer | 7.70e-11 | 51 |