FFCP PHASE1:Hg19::chr21:46424517..46424530,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378825 | |EntrezGene=378825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19725 | |HGNC=19725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=111bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | |association_with_transcript=111bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | ||
|cluster_id=chr21:46424517..46424530,- | |||
|coexpression_cluster_id=C2636 | |||
|description=CAGE_peak_4_at_LINC00162_5end | |description=CAGE_peak_4_at_LINC00162_5end | ||
|id=chr21:46424517..46424530,- | |id=chr21:46424517..46424530,- | ||
|ontology_enrichment_celltype=CL:0002150!2.68e-09!3;CL:0000861!2.68e-09!3 | |ontology_enrichment_celltype=CL:0002150!2.68e-09!3;CL:0000861!2.68e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:1001319;7.59e-08;1!CL:1000600;7.59e-08;1!CL:0002379;7.59e-08;1!CL:0002327;9.63e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.52e-08,253;CL:0002379,5.79e-08,1;CL:1001319,6.63e-08,1;CL:1000600,6.63e-08,1;CL:0002327,8.71e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0008947;9.25e-18;29!UBERON:0005425;3.57e-08;1 | |||
|ontology_enrichment_disease=DOID:162!2.77e-10!235;DOID:14566!7.47e-10!239;DOID:305!1.15e-09!106;DOID:0050687!2.57e-09!143 | |ontology_enrichment_disease=DOID:162!2.77e-10!235;DOID:14566!7.47e-10!239;DOID:305!1.15e-09!106;DOID:0050687!2.57e-09!143 | ||
|ontology_enrichment_disease_v019=DOID:3620;7.59e-08;1!DOID:3565;7.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.89e-13,235;DOID:305,4.76e-13,106;DOID:14566,9.14e-13,239;DOID:0050687,1.07e-11,143;DOID:3620,5.79e-08,1;DOID:3565,5.79e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.34e-26!9;UBERON:0001557!1.06e-13!19;UBERON:0004732!1.74e-08!13;UBERON:0008947!4.04e-08!38;UBERON:0003258!4.04e-08!38;UBERON:0003076!4.38e-07!15;UBERON:0003057!4.38e-07!15;UBERON:0001041!7.02e-07!98;UBERON:0000063!7.96e-07!97 | |ontology_enrichment_uberon=UBERON:0001737!9.34e-26!9;UBERON:0001557!1.06e-13!19;UBERON:0004732!1.74e-08!13;UBERON:0008947!4.04e-08!38;UBERON:0003258!4.04e-08!38;UBERON:0003076!4.38e-07!15;UBERON:0003057!4.38e-07!15;UBERON:0001041!7.02e-07!98;UBERON:0000063!7.96e-07!97 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.56e-60;9!UBERON:0001557;2.56e-60;9!UBERON:0000072;7.00e-13;37!UBERON:0000065;7.67e-11;44!UBERON:0000941;3.57e-08;1!UBERON:0001785;3.57e-08;1!UBERON:0002464;3.57e-08;1!UBERON:0004904;3.57e-08;1!UBERON:0001021;3.57e-08;1!UBERON:0004645;7.59e-08;1!UBERON:0001256;7.59e-08;1!UBERON:0001259;7.59e-08;1!UBERON:0001911;9.63e-08;4!UBERON:0001004;6.01e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.96e-60,9;UBERON:0001557,3.29e-34,19;UBERON:0008947,3.09e-13,38;UBERON:0003258,3.09e-13,38;UBERON:0000072,8.24e-13,47;UBERON:0000065,6.30e-11,54;UBERON:0000941,3.11e-08,1;UBERON:0001785,3.11e-08,1;UBERON:0002464,3.11e-08,1;UBERON:0004904,3.11e-08,1;UBERON:0001021,3.11e-08,1;UBERON:0003902,3.11e-08,1;UBERON:0005425,3.11e-08,1;UBERON:0004645,6.63e-08,1;UBERON:0001256,6.63e-08,1;UBERON:0001259,6.63e-08,1;UBERON:0001911,8.71e-08,4;UBERON:0005333,8.71e-08,4;UBERON:0008425,8.71e-08,4;UBERON:0005311,8.71e-08,4;UBERON:0001004,1.63e-07,74 | |||
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| ||
|short_description=p4@LINC00162 | |short_description=p4@LINC00162 | ||
}} | }} |
Latest revision as of 20:22, 18 September 2015
Short description: | p4@LINC00162 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LINC00162_5end |
Coexpression cluster: | C2636_Hep2_Mammary_cervical_mesenchymal_mesothelioma_giant_pagetoid |
Association with transcript: | 111bp_to_ENST00000422199, NR_024089, uc002zgo.2_5end |
EntrezGene: | LINC00162 |
HGNC: | 19725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.52e-08 | 253 |
meningothelial cell | 5.79e-08 | 1 |
bladder cell | 6.63e-08 | 1 |
lower urinary tract cell | 6.63e-08 | 1 |
mammary gland epithelial cell | 8.71e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.96e-60 | 9 |
upper respiratory tract | 3.29e-34 | 19 |
respiratory primordium | 3.09e-13 | 38 |
endoderm of foregut | 3.09e-13 | 38 |
segment of respiratory tract | 8.24e-13 | 47 |
respiratory tract | 6.30e-11 | 54 |
cranial nerve II | 3.11e-08 | 1 |
cranial nerve | 3.11e-08 | 1 |
nerve trunk | 3.11e-08 | 1 |
nerve connecting eye with brain | 3.11e-08 | 1 |
nerve | 3.11e-08 | 1 |
retinal neural layer | 3.11e-08 | 1 |
presumptive neural retina | 3.11e-08 | 1 |
urinary bladder urothelium | 6.63e-08 | 1 |
wall of urinary bladder | 6.63e-08 | 1 |
mucosa of urinary bladder | 6.63e-08 | 1 |
mammary gland | 8.71e-08 | 4 |
mammary bud | 8.71e-08 | 4 |
mammary ridge | 8.71e-08 | 4 |
mammary placode | 8.71e-08 | 4 |
respiratory system | 1.63e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.89e-13 | 235 |
carcinoma | 4.76e-13 | 106 |
disease of cellular proliferation | 9.14e-13 | 239 |
cell type cancer | 1.07e-11 | 143 |
central nervous system cancer | 5.79e-08 | 1 |
meningioma | 5.79e-08 | 1 |