FFCP PHASE1:Hg19::chr21:47401650..47401692,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt=P12109,B4DRR8,Q05BT9 | |UniProt=P12109,B4DRR8,Q05BT9 | ||
|association_with_transcript=0bp_to_ENST00000361866,ENST00000538397,ENST00000546256,NM_001848,uc002zhu.1_5end | |association_with_transcript=0bp_to_ENST00000361866,ENST00000538397,ENST00000546256,NM_001848,uc002zhu.1_5end | ||
|cluster_id=chr21:47401650..47401692,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_1_at_COL6A1_5end | |description=CAGE_peak_1_at_COL6A1_5end | ||
|id=chr21:47401650..47401692,+ | |id=chr21:47401650..47401692,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.63e-49!180;CL:0000057!1.36e-25!75;CL:0000183!3.44e-19!59;CL:0000680!3.46e-19!57;CL:0000056!3.46e-19!57;CL:0000355!3.46e-19!57;CL:0000187!1.20e-18!54;CL:0000393!8.41e-18!60;CL:0000211!8.41e-18!60;CL:0000192!2.26e-14!42;CL:0000514!2.26e-14!42;CL:0000359!1.15e-10!32;CL:0000222!1.40e-10!119;CL:0002620!2.29e-10!23;CL:0000499!3.37e-07!27 | |ontology_enrichment_celltype=CL:0000055!2.63e-49!180;CL:0000057!1.36e-25!75;CL:0000183!3.44e-19!59;CL:0000680!3.46e-19!57;CL:0000056!3.46e-19!57;CL:0000355!3.46e-19!57;CL:0000187!1.20e-18!54;CL:0000393!8.41e-18!60;CL:0000211!8.41e-18!60;CL:0000192!2.26e-14!42;CL:0000514!2.26e-14!42;CL:0000359!1.15e-10!32;CL:0000222!1.40e-10!119;CL:0002620!2.29e-10!23;CL:0000499!3.37e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000187;7.89e-11;55!CL:0000192;9.37e-11;43!CL:0000057;9.98e-11;73!CL:0002620;2.04e-10;23!CL:0000359;3.86e-10;32!CL:0000393;6.62e-10;61!CL:0000211;6.62e-10;61!CL:0000134;5.90e-09;55!CL:0002320;1.07e-08;188!CL:0000723;1.14e-08;61!CL:0000048;4.47e-08;58!CL:0000499;9.96e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.81e-26,76;CL:0000680,1.12e-19,58;CL:0000056,1.12e-19,58;CL:0000355,1.12e-19,58;CL:0000187,3.90e-19,55;CL:0000393,2.80e-18,61;CL:0000211,2.80e-18,61;CL:0000192,7.94e-15,43;CL:0000514,7.94e-15,43;CL:0000222,1.02e-10,121;CL:0000359,1.03e-10,32;CL:0002620,2.06e-10,23;CL:0000499,9.94e-08,28 | |||
|ontology_enrichment_development_v019=CL:0000355;8.88e-11;58!CL:0000514;9.37e-11;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.50e-25!83;UBERON:0002329!3.50e-25!83;UBERON:0003077!3.50e-25!83;UBERON:0003059!3.50e-25!83;UBERON:0007282!3.50e-25!83;UBERON:0009618!3.50e-25!83;UBERON:0007285!3.50e-25!83;UBERON:0004290!2.57e-23!70;UBERON:0005256!1.73e-22!143;UBERON:0000475!2.42e-22!365;UBERON:0000486!3.71e-20!82;UBERON:0002385!1.01e-19!63;UBERON:0001015!1.01e-19!63;UBERON:0000383!1.01e-19!63;UBERON:0001134!1.79e-19!61;UBERON:0002036!1.79e-19!61;UBERON:0003082!1.79e-19!61;UBERON:0000481!1.43e-17!347;UBERON:0002100!8.39e-16!216;UBERON:0000468!4.02e-13!659;UBERON:0003104!7.38e-13!238;UBERON:0009142!7.38e-13!238;UBERON:0003102!9.06e-13!95;UBERON:0000119!5.85e-11!312;UBERON:0002199!1.39e-10!45;UBERON:0002416!1.39e-10!45;UBERON:0000483!1.96e-10!309;UBERON:0000490!9.41e-10!138;UBERON:0004872!2.26e-09!84;UBERON:0000467!7.67e-09!625;UBERON:0000480!9.65e-09!626;UBERON:0001013!2.45e-08!14;UBERON:0002097!3.17e-08!40;UBERON:0003914!3.19e-08!118;UBERON:0002049!5.43e-08!79;UBERON:0007798!5.43e-08!79;UBERON:0004573!1.81e-07!33;UBERON:0004571!1.81e-07!33;UBERON:0001637!1.88e-07!42;UBERON:0003509!1.88e-07!42;UBERON:0004572!1.88e-07!42;UBERON:0000477!3.86e-07!286;UBERON:0000922!4.38e-07!612 | |ontology_enrichment_uberon=UBERON:0000914!3.50e-25!83;UBERON:0002329!3.50e-25!83;UBERON:0003077!3.50e-25!83;UBERON:0003059!3.50e-25!83;UBERON:0007282!3.50e-25!83;UBERON:0009618!3.50e-25!83;UBERON:0007285!3.50e-25!83;UBERON:0004290!2.57e-23!70;UBERON:0005256!1.73e-22!143;UBERON:0000475!2.42e-22!365;UBERON:0000486!3.71e-20!82;UBERON:0002385!1.01e-19!63;UBERON:0001015!1.01e-19!63;UBERON:0000383!1.01e-19!63;UBERON:0001134!1.79e-19!61;UBERON:0002036!1.79e-19!61;UBERON:0003082!1.79e-19!61;UBERON:0000481!1.43e-17!347;UBERON:0002100!8.39e-16!216;UBERON:0000468!4.02e-13!659;UBERON:0003104!7.38e-13!238;UBERON:0009142!7.38e-13!238;UBERON:0003102!9.06e-13!95;UBERON:0000119!5.85e-11!312;UBERON:0002199!1.39e-10!45;UBERON:0002416!1.39e-10!45;UBERON:0000483!1.96e-10!309;UBERON:0000490!9.41e-10!138;UBERON:0004872!2.26e-09!84;UBERON:0000467!7.67e-09!625;UBERON:0000480!9.65e-09!626;UBERON:0001013!2.45e-08!14;UBERON:0002097!3.17e-08!40;UBERON:0003914!3.19e-08!118;UBERON:0002049!5.43e-08!79;UBERON:0007798!5.43e-08!79;UBERON:0004573!1.81e-07!33;UBERON:0004571!1.81e-07!33;UBERON:0001637!1.88e-07!42;UBERON:0003509!1.88e-07!42;UBERON:0004572!1.88e-07!42;UBERON:0000477!3.86e-07!286;UBERON:0000922!4.38e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.69e-10;31!UBERON:0001015;5.69e-10;31!UBERON:0000383;5.69e-10;31!UBERON:0002384;7.67e-09;198!UBERON:0001013;2.25e-08;14!UBERON:0002204;1.17e-07;70!UBERON:0002199;2.15e-07;46!UBERON:0002416;2.15e-07;46!UBERON:0004573;6.58e-07;33!UBERON:0004571;6.58e-07;33!UBERON:0002097;7.63e-07;41 | |||
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| ||
|short_description=p1@COL6A1 | |short_description=p1@COL6A1 | ||
}} | }} |
Latest revision as of 21:49, 18 September 2015
Short description: | p1@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 0bp_to_ENST00000361866, ENST00000538397, ENST00000546256, NM_001848, uc002zhu.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | P12109B4DRR8Q05BT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.81e-26 | 76 |
muscle precursor cell | 1.12e-19 | 58 |
myoblast | 1.12e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.12e-19 | 58 |
muscle cell | 3.90e-19 | 55 |
electrically responsive cell | 2.80e-18 | 61 |
electrically active cell | 2.80e-18 | 61 |
smooth muscle cell | 7.94e-15 | 43 |
smooth muscle myoblast | 7.94e-15 | 43 |
mesodermal cell | 1.02e-10 | 121 |
vascular associated smooth muscle cell | 1.03e-10 | 32 |
skin fibroblast | 2.06e-10 | 23 |
stromal cell | 9.94e-08 | 28 |