FFCP PHASE1:Hg19::chrX:106146585..106146594,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92129 | |EntrezGene=92129 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25117 | |HGNC=25117 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000411805_5end | |association_with_transcript=-20bp_to_ENST00000411805_5end | ||
|cluster_id=chrX:106146585..106146594,- | |||
|coexpression_cluster_id=C114 | |||
|description=CAGE_peak_2_at_RIPPLY1_5end | |description=CAGE_peak_2_at_RIPPLY1_5end | ||
|id=chrX:106146585..106146594,- | |id=chrX:106146585..106146594,- | ||
|ontology_enrichment_celltype=CL:0000064!8.03e-44!3;CL:0005012!8.03e-44!3;CL:0000067!8.03e-44!3;CL:0002304!8.03e-44!3;CL:0002603!1.53e-19!3;CL:0000669!2.99e-12!5;CL:0000128!6.31e-09!7;CL:0000126!6.31e-09!7;CL:0000127!6.31e-09!7;CL:0002453!6.31e-09!7;CL:0000075!7.43e-09!27;CL:0002549!2.00e-08!2;CL:0002575!2.67e-08!2;CL:0000133!3.93e-08!59;CL:0000243!5.12e-08!15;CL:0000125!5.12e-08!15;CL:0000030!5.12e-08!15;CL:0000339!5.12e-08!15;CL:0000095!3.15e-07!17;CL:0000123!3.15e-07!17;CL:0000630!3.34e-07!9;CL:0000710!4.25e-07!20;CL:0000221!9.69e-07!71 | |ontology_enrichment_celltype=CL:0000064!8.03e-44!3;CL:0005012!8.03e-44!3;CL:0000067!8.03e-44!3;CL:0002304!8.03e-44!3;CL:0002603!1.53e-19!3;CL:0000669!2.99e-12!5;CL:0000128!6.31e-09!7;CL:0000126!6.31e-09!7;CL:0000127!6.31e-09!7;CL:0002453!6.31e-09!7;CL:0000075!7.43e-09!27;CL:0002549!2.00e-08!2;CL:0002575!2.67e-08!2;CL:0000133!3.93e-08!59;CL:0000243!5.12e-08!15;CL:0000125!5.12e-08!15;CL:0000030!5.12e-08!15;CL:0000339!5.12e-08!15;CL:0000095!3.15e-07!17;CL:0000123!3.15e-07!17;CL:0000630!3.34e-07!9;CL:0000710!4.25e-07!20;CL:0000221!9.69e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000064;1.55e-98;3!CL:0000067;1.55e-98;3!CL:0005012;1.55e-98;3!CL:0002304;1.55e-98;3!CL:0000075;4.30e-20;27!CL:0000710;1.29e-15;20!CL:0002077;1.30e-09;34!CL:0000306;1.44e-09;4!CL:0002222;1.44e-09;4!CL:0002224;1.44e-09;4!CL:0002149;9.49e-07;6!CL:0002255;9.49e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.55e-98,3;CL:0000067,1.55e-98,3;CL:0005012,1.55e-98,3;CL:0002304,1.55e-98,3;CL:0000075,4.30e-20,27;CL:0000710,1.29e-15,20;CL:0000306,1.44e-09,4;CL:0002222,1.44e-09,4;CL:0002224,1.44e-09,4;CL:0002077,1.67e-09,34;CL:0002149,9.49e-07,6;CL:0002255,9.49e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3001;9.49e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,9.49e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001778!8.03e-44!3;UBERON:0001775!8.03e-44!3;UBERON:0000488!4.47e-33!4;UBERON:0002203!2.64e-22!6;UBERON:0001768!2.64e-22!6;UBERON:0007625!2.61e-21!11;UBERON:0002200!3.21e-21!11;UBERON:0006876!3.21e-21!11;UBERON:0001801!8.01e-17!14;UBERON:0000019!1.77e-12!19;UBERON:0000047!1.77e-12!19;UBERON:0004088!1.77e-12!19;UBERON:0003072!1.77e-12!19;UBERON:0003071!1.77e-12!19;UBERON:0004128!1.77e-12!19;UBERON:0000970!7.22e-12!20;UBERON:0002104!2.57e-11!21;UBERON:0001456!2.57e-11!21;UBERON:0000020!2.36e-10!23;UBERON:0002037!2.90e-10!6;UBERON:0006215!2.90e-10!6;UBERON:0001032!6.21e-10!24;UBERON:0004456!6.21e-10!24;UBERON:0003947!2.00e-08!2;UBERON:0005629!2.00e-08!2;UBERON:0005358!2.00e-08!2;UBERON:0001886!2.00e-08!2;UBERON:0004086!2.00e-08!2;UBERON:0005282!2.00e-08!2;UBERON:0005281!2.00e-08!2;UBERON:0005085!2.93e-08!29;UBERON:0002680!3.90e-07!9;UBERON:0001895!3.90e-07!9;UBERON:0010092!3.90e-07!9 | |ontology_enrichment_uberon=UBERON:0001778!8.03e-44!3;UBERON:0001775!8.03e-44!3;UBERON:0000488!4.47e-33!4;UBERON:0002203!2.64e-22!6;UBERON:0001768!2.64e-22!6;UBERON:0007625!2.61e-21!11;UBERON:0002200!3.21e-21!11;UBERON:0006876!3.21e-21!11;UBERON:0001801!8.01e-17!14;UBERON:0000019!1.77e-12!19;UBERON:0000047!1.77e-12!19;UBERON:0004088!1.77e-12!19;UBERON:0003072!1.77e-12!19;UBERON:0003071!1.77e-12!19;UBERON:0004128!1.77e-12!19;UBERON:0000970!7.22e-12!20;UBERON:0002104!2.57e-11!21;UBERON:0001456!2.57e-11!21;UBERON:0000020!2.36e-10!23;UBERON:0002037!2.90e-10!6;UBERON:0006215!2.90e-10!6;UBERON:0001032!6.21e-10!24;UBERON:0004456!6.21e-10!24;UBERON:0003947!2.00e-08!2;UBERON:0005629!2.00e-08!2;UBERON:0005358!2.00e-08!2;UBERON:0001886!2.00e-08!2;UBERON:0004086!2.00e-08!2;UBERON:0005282!2.00e-08!2;UBERON:0005281!2.00e-08!2;UBERON:0005085!2.93e-08!29;UBERON:0002680!3.90e-07!9;UBERON:0001895!3.90e-07!9;UBERON:0010092!3.90e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.55e-98;3!UBERON:0001775;1.55e-98;3!UBERON:0000488;3.32e-74;4!UBERON:0002203;7.51e-50;6!UBERON:0001768;7.51e-50;6!UBERON:0002200;7.51e-50;6!UBERON:0007625;3.65e-48;11!UBERON:0001801;4.95e-38;14!UBERON:0000019;3.07e-28;19!UBERON:0000047;3.07e-28;19!UBERON:0004088;3.07e-28;19!UBERON:0010230;3.07e-28;19!UBERON:0006876;1.17e-27;11!UBERON:0000970;7.25e-27;20!UBERON:0002104;1.27e-25;21!UBERON:0001456;1.27e-25;21!UBERON:0000020;1.84e-23;23!UBERON:0001032;1.63e-22;24!UBERON:0004456;1.63e-22;24!UBERON:0010371;2.09e-17;31!UBERON:0010077;1.44e-09;4!UBERON:0005389;1.44e-09;4!UBERON:0000484;1.44e-09;4!UBERON:0000965;1.44e-09;4!UBERON:0001803;1.44e-09;4!UBERON:0001444;1.72e-07;48!UBERON:0000033;3.72e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.55e-98,3;UBERON:0001775,1.55e-98,3;UBERON:0000488,3.32e-74,4;UBERON:0002203,7.51e-50,6;UBERON:0001768,7.51e-50,6;UBERON:0002200,7.51e-50,6;UBERON:0007625,3.65e-48,11;UBERON:0001801,4.95e-38,14;UBERON:0006876,1.17e-27,11;UBERON:0000019,7.25e-27,20;UBERON:0000047,7.25e-27,20;UBERON:0010312,7.25e-27,20;UBERON:0004088,7.25e-27,20;UBERON:0010230,7.25e-27,20;UBERON:0003072,7.25e-27,20;UBERON:0004128,7.25e-27,20;UBERON:0003071,7.25e-27,20;UBERON:0000970,1.27e-25,21;UBERON:0002104,1.27e-25,21;UBERON:0001456,1.71e-24,22;UBERON:0000020,1.63e-22,24;UBERON:0001032,1.63e-22,24;UBERON:0004456,1.63e-22,24;UBERON:0005085,1.37e-17,31;UBERON:0001444,2.34e-11,49;UBERON:0000033,5.25e-10,56;UBERON:0010077,1.44e-09,4;UBERON:0005389,1.44e-09,4;UBERON:0000484,1.44e-09,4;UBERON:0002546,1.44e-09,4;UBERON:0000965,1.44e-09,4;UBERON:0001803,1.44e-09,4;UBERON:0003073,1.44e-09,4;UBERON:0005426,1.44e-09,4;UBERON:0000153,4.34e-09,62;UBERON:0007811,4.34e-09,62;UBERON:0003056,4.34e-09,61;UBERON:0003075,6.53e-07,82;UBERON:0007284,6.53e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44313640671119,2.66075276955077,4.30390449896318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59384255422738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.812839312631559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42304773014896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553394539744923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7693725859721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44313640671119,2.66075276955077,4.30390449896318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59384255422738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.812839312631559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42304773014896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553394539744923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7693725859721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@RIPPLY1 | |short_description=p2@RIPPLY1 | ||
}} | }} |
Latest revision as of 22:18, 18 September 2015
Short description: | p2@RIPPLY1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RIPPLY1_5end |
Coexpression cluster: | C114_teratocarcinoma_medulloblastoma_carcinosarcoma_iPS_anaplastic_acute_neuroblastoma |
Association with transcript: | -20bp_to_ENST00000411805_5end |
EntrezGene: | RIPPLY1 |
HGNC: | 25117 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.55e-98 | 3 |
ciliated epithelial cell | 1.55e-98 | 3 |
multi-ciliated epithelial cell | 1.55e-98 | 3 |
non-pigmented ciliary epithelial cell | 1.55e-98 | 3 |
columnar/cuboidal epithelial cell | 4.30e-20 | 27 |
neurecto-epithelial cell | 1.29e-15 | 20 |
crystallin accumulating cell | 1.44e-09 | 4 |
vertebrate lens cell | 1.44e-09 | 4 |
lens epithelial cell | 1.44e-09 | 4 |
ecto-epithelial cell | 1.67e-09 | 34 |
epithelial cell of uterus | 9.49e-07 | 6 |
stromal cell of endometrium | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 9.49e-07 | 6 |