FFCP PHASE1:Hg19::chr12:52884676..52884706,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52884676..52884706,- to FFCP PHASE1:Hg19::chr12:52884676..52884706,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3853 | |EntrezGene=3853 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6443 | |HGNC=6443 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=234bp_to_ENST00000549600_5end | |||
|cluster_id=chr12:52884676..52884706,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_13_at_KRT6A_5end | |||
|id=chr12:52884676..52884706,- | |||
|ontology_enrichment_celltype=CL:0002076!5.47e-25!43;CL:0002368!9.70e-21!13;CL:0002159!2.49e-20!13;CL:0000223!3.97e-17!59;CL:0002328!3.30e-14!3;CL:0000066!4.92e-14!254;CL:0000349!1.08e-13!3;CL:0002577!1.08e-13!3;CL:0002166!1.40e-13!3;CL:0002202!3.31e-12!9;CL:0002632!3.31e-12!9;CL:0000240!1.14e-11!6;CL:0000311!1.14e-11!6;CL:0000079!1.14e-11!6;CL:0000237!1.14e-11!6;CL:0000036!1.14e-11!6;CL:0000357!1.14e-11!6;CL:0000114!1.14e-11!6;CL:0002077!2.25e-11!33;CL:0002536!2.19e-09!2;CL:0000362!4.24e-09!8;CL:0002251!6.51e-09!21;CL:0000312!1.79e-08!5;CL:0000622!2.43e-08!5;CL:0002541!3.12e-07!3;CL:0000154!5.11e-07!6;CL:0000068!9.55e-07!3;CL:0000069!9.55e-07!3;CL:0000307!9.55e-07!3;CL:0000377!9.55e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;4.17e-30;3!CL:0002252;3.28e-23;1!CL:0000349;5.80e-19;19!CL:0000317;2.59e-12;2!CL:1000448;2.59e-12;2!CL:0002308;2.59e-12;2!CL:0002140;2.59e-12;2!CL:0000362;9.69e-11;9!CL:0002328;1.21e-08;3!CL:0002577;1.21e-08;3!CL:0002159;3.14e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.30e-30,3;CL:0002252,3.28e-23,1;CL:0000349,4.39e-19,19;CL:0000317,2.90e-12,2;CL:1000448,2.90e-12,2;CL:0002308,2.90e-12,2;CL:0002140,2.90e-12,2;CL:0000362,1.12e-10,9;CL:0002577,1.04e-08,3;CL:0002328,1.51e-08,3;CL:0002159,3.44e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.65e-12;2!UBERON:0010056;1.65e-12;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.86e-24!14;UBERON:0000158!3.86e-24!14;UBERON:0003124!6.36e-16!7;UBERON:0004815!3.30e-14!3;UBERON:0002031!3.30e-14!3;UBERON:0000478!2.16e-13!24;UBERON:0002185!9.05e-11!4;UBERON:0001987!2.18e-10!4;UBERON:0004340!2.18e-10!4;UBERON:0001708!2.64e-10!4;UBERON:0001704!2.64e-10!4;UBERON:0000305!3.18e-10!7;UBERON:0001004!3.59e-10!72;UBERON:0000166!5.15e-09!21;UBERON:0004119!5.54e-09!169;UBERON:0000925!5.54e-09!169;UBERON:0006595!5.54e-09!169;UBERON:0004871!5.93e-09!8;UBERON:0000165!2.10e-08!28;UBERON:0000930!2.10e-08!28;UBERON:0000161!2.92e-08!35;UBERON:0003102!7.09e-08!95;UBERON:0007196!9.82e-08!14;UBERON:0001558!9.82e-08!14;UBERON:0000476!3.12e-07!3;UBERON:0000920!3.12e-07!3;UBERON:0004923!4.89e-07!57;UBERON:0002090!5.22e-07!6;UBERON:0001723!6.18e-07!3;UBERON:0001033!6.18e-07!3;UBERON:0010056!6.18e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.17e-30;3!UBERON:0000920;4.17e-30;3!UBERON:0005631;1.57e-20;10!UBERON:0000158;1.57e-20;10!UBERON:0000478;4.10e-15;24!UBERON:0002419;2.59e-12;2!UBERON:0007771;2.59e-12;2!UBERON:0003297;2.59e-12;2!UBERON:0001821;2.59e-12;2!UBERON:0003487;2.59e-12;2!UBERON:0001820;2.59e-12;2!UBERON:0001723;8.96e-09;3!UBERON:0001033;8.96e-09;3!UBERON:0001043;1.21e-08;3!UBERON:0004815;1.21e-08;3!UBERON:0002031;1.21e-08;3!UBERON:0001003;8.33e-07;15!UBERON:0007376;8.33e-07;15!UBERON:0001987;8.61e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.30e-30,3;UBERON:0003124,5.13e-29,7;UBERON:0005631,1.05e-25,14;UBERON:0000158,1.05e-25,14;UBERON:0000478,3.29e-15,24;UBERON:0002419,2.90e-12,2;UBERON:0007771,2.90e-12,2;UBERON:0003297,2.90e-12,2;UBERON:0001821,2.90e-12,2;UBERON:0003487,2.90e-12,2;UBERON:0001820,2.90e-12,2;UBERON:0005089,2.90e-12,2;UBERON:0005088,2.90e-12,2;UBERON:0001723,8.96e-09,3;UBERON:0001033,8.96e-09,3;UBERON:0010056,8.96e-09,3;UBERON:0001043,1.21e-08,3;UBERON:0009143,1.21e-08,3;UBERON:0004815,1.51e-08,3;UBERON:0002031,1.51e-08,3;UBERON:0001987,7.70e-07,4;UBERON:0004340,7.70e-07,4;UBERON:0001003,9.09e-07,15;UBERON:0007376,9.09e-07,15;UBERON:0007383,9.09e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98775256867763,1.1240175325762,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.335964256397719,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0.661139661443912,0.768760269460425,0,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20735660317994,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.230850775511391,0,0,0,0,1.91400695839152,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17716747896961,0.342233301085281,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98775256867763,1.1240175325762,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.335964256397719,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0.661139661443912,0.768760269460425,0,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20735660317994,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.230850775511391,0,0,0,0,1.91400695839152,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17716747896961,0.342233301085281,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | ||
|short_description=p13@KRT6A | |||
}} | }} |
Latest revision as of 22:48, 18 September 2015
Short description: | p13@KRT6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_KRT6A_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 234bp_to_ENST00000549600_5end |
EntrezGene: | KRT6A |
HGNC: | 6443 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.30e-30 | 3 |
epithelial cell of esophagus | 3.28e-23 | 1 |
extraembryonic cell | 4.39e-19 | 19 |
sebum secreting cell | 2.90e-12 | 2 |
epithelial cell of sweat gland | 2.90e-12 | 2 |
epithelial cell of skin gland | 2.90e-12 | 2 |
acinar cell of sebaceous gland | 2.90e-12 | 2 |
epidermal cell | 1.12e-10 | 9 |
placental epithelial cell | 1.04e-08 | 3 |
bronchial epithelial cell | 1.51e-08 | 3 |
general ecto-epithelial cell | 3.44e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.30e-30 | 3 |
chorion | 5.13e-29 | 7 |
extraembryonic membrane | 1.05e-25 | 14 |
membranous layer | 1.05e-25 | 14 |
extraembryonic structure | 3.29e-15 | 24 |
skin gland | 2.90e-12 | 2 |
epidermis gland | 2.90e-12 | 2 |
gland of integumental system | 2.90e-12 | 2 |
sebaceous gland | 2.90e-12 | 2 |
skin sebaceous gland | 2.90e-12 | 2 |
sweat gland | 2.90e-12 | 2 |
sweat gland placode | 2.90e-12 | 2 |
sebaceous gland placode | 2.90e-12 | 2 |
tongue | 8.96e-09 | 3 |
gustatory system | 8.96e-09 | 3 |
future tongue | 8.96e-09 | 3 |
esophagus | 1.21e-08 | 3 |
esophageal region | 1.21e-08 | 3 |
lower respiratory tract epithelium | 1.51e-08 | 3 |
epithelium of bronchus | 1.51e-08 | 3 |
placenta | 7.70e-07 | 4 |
allantois | 7.70e-07 | 4 |
skin epidermis | 9.09e-07 | 15 |
outer epithelium | 9.09e-07 | 15 |
enveloping layer of ectoderm | 9.09e-07 | 15 |