FFCP PHASE1:Hg19::chr5:82502142..82502143,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7518 | |EntrezGene=7518 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12831 | |HGNC=12831 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=22bp_to_uc003kig.2_5end | |association_with_transcript=22bp_to_uc003kig.2_5end | ||
|cluster_id=chr5:82502142..82502143,+ | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_9_at_XRCC4_5end | |description=CAGE_peak_9_at_XRCC4_5end | ||
|id=chr5:82502142..82502143,+ | |id=chr5:82502142..82502143,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;4.22e-13;15!CL:0000125;4.22e-13;15!CL:0000095;6.95e-12;17!CL:0002319;8.32e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,4.22e-13,15;CL:0000125,4.22e-13,15;CL:0000030,4.22e-13,15;CL:0000339,4.22e-13,15;CL:0000095,6.95e-12,17;CL:0000123,6.95e-12,17;CL:0002319,8.32e-09,25 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3!UBERON:0006238;2.25e-19;10!CL:0000339;4.22e-13;15 | |||
|ontology_enrichment_disease=DOID:5409!8.69e-18!4;DOID:1325!8.99e-11!7;DOID:3904!8.99e-11!7;DOID:3905!1.12e-08!9;DOID:0060058!6.56e-08!10;DOID:3093!7.48e-07!11 | |ontology_enrichment_disease=DOID:5409!8.69e-18!4;DOID:1325!8.99e-11!7;DOID:3904!8.99e-11!7;DOID:3905!1.12e-08!9;DOID:0060058!6.56e-08!10;DOID:3093!7.48e-07!11 | ||
|ontology_enrichment_disease_v019=DOID:3093;6.76e-18;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,6.76e-18,11 | |||
|ontology_enrichment_uberon=UBERON:0002106!4.09e-23!3;UBERON:0004854!4.09e-23!3;UBERON:0009034!4.09e-23!3;UBERON:0002095!4.09e-23!3;UBERON:0004782!4.09e-23!3;UBERON:0003281!4.09e-23!3;UBERON:0009664!4.09e-23!3;UBERON:0002296!4.09e-23!3;UBERON:0005602!4.09e-23!3;UBERON:0001179!4.09e-23!3;UBERON:0006293!4.09e-23!3;UBERON:0000966!1.40e-14!5;UBERON:0005388!1.40e-14!5;UBERON:0001802!1.40e-14!5;UBERON:0004177!9.89e-11!7;UBERON:0000945!1.47e-09!8;UBERON:0010039!1.47e-09!8;UBERON:0004457!8.38e-07!12;UBERON:0000042!8.38e-07!12 | |ontology_enrichment_uberon=UBERON:0002106!4.09e-23!3;UBERON:0004854!4.09e-23!3;UBERON:0009034!4.09e-23!3;UBERON:0002095!4.09e-23!3;UBERON:0004782!4.09e-23!3;UBERON:0003281!4.09e-23!3;UBERON:0009664!4.09e-23!3;UBERON:0002296!4.09e-23!3;UBERON:0005602!4.09e-23!3;UBERON:0001179!4.09e-23!3;UBERON:0006293!4.09e-23!3;UBERON:0000966!1.40e-14!5;UBERON:0005388!1.40e-14!5;UBERON:0001802!1.40e-14!5;UBERON:0004177!9.89e-11!7;UBERON:0000945!1.47e-09!8;UBERON:0010039!1.47e-09!8;UBERON:0004457!8.38e-07!12;UBERON:0000042!8.38e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
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|short_description=p9@XRCC4 | |short_description=p9@XRCC4 | ||
}} | }} |
Latest revision as of 00:30, 19 September 2015
Short description: | p9@XRCC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_XRCC4_5end |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | 22bp_to_uc003kig.2_5end |
EntrezGene: | XRCC4 |
HGNC: | 12831 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 4.22e-13 | 15 |
glial cell | 4.22e-13 | 15 |
glioblast | 4.22e-13 | 15 |
glioblast (sensu Vertebrata) | 4.22e-13 | 15 |
neuron associated cell | 6.95e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 6.95e-12 | 17 |
neural cell | 8.32e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 6.76e-18 | 11 |