FFCP PHASE1:Hg19::chr17:20059358..20059401,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92521 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30615 | |||
|TSSclassifier=strong | |||
|UniProt=Q5M775,F5H2Z1 | |||
|association_with_transcript=0bp_to_ENST00000395522,ENST00000395525,ENST00000395527,ENST00000536879,uc002gwt.2,uc002gwu.2,uc002gwv.2,uc010vzf.1_5end | |||
|cluster_id=chr17:20059358..20059401,+ | |||
|coexpression_cluster_id=C3613 | |||
|description=CAGE_peak_1_at_SPECC1_5end | |||
|id=chr17:20059358..20059401,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.03e-22!254;CL:0002076!1.61e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.36e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.44e-22,253;CL:0002076,2.90e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.16e-16!106;DOID:0050687!6.79e-13!143;DOID:162!6.91e-09!235;DOID:14566!1.12e-08!239;DOID:193!2.18e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:193;1.92e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.16e-17,106;DOID:0050687,3.21e-13,143;DOID:162,2.16e-09,235;DOID:14566,3.59e-09,239;DOID:193,1.72e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.86e-21!86;UBERON:0001017!7.22e-21!82;UBERON:0000073!2.98e-19!94;UBERON:0001016!2.98e-19!94;UBERON:0000955!5.99e-17!69;UBERON:0006238!5.99e-17!69;UBERON:0000064!6.67e-17!219;UBERON:0001049!1.84e-16!57;UBERON:0005068!1.84e-16!57;UBERON:0006241!1.84e-16!57;UBERON:0007135!1.84e-16!57;UBERON:0004121!4.88e-16!169;UBERON:0000924!6.39e-15!173;UBERON:0006601!6.39e-15!173;UBERON:0000033!2.29e-14!123;UBERON:0003075!3.05e-14!86;UBERON:0007284!3.05e-14!86;UBERON:0002616!3.91e-14!59;UBERON:0002020!1.97e-13!34;UBERON:0003528!1.97e-13!34;UBERON:0001893!2.55e-13!34;UBERON:0002780!4.16e-13!41;UBERON:0001890!4.16e-13!41;UBERON:0006240!4.16e-13!41;UBERON:0002791!5.74e-13!33;UBERON:0002346!1.07e-12!90;UBERON:0000153!2.68e-12!129;UBERON:0007811!2.68e-12!129;UBERON:0001869!4.03e-12!32;UBERON:0003080!4.35e-12!42;UBERON:0003056!8.12e-12!61;UBERON:0000481!2.10e-10!347;UBERON:0000475!4.35e-10!365;UBERON:0000956!1.89e-09!25;UBERON:0000203!1.89e-09!25;UBERON:0000062!4.32e-09!511;UBERON:0000922!7.38e-09!612;UBERON:0002619!1.19e-08!22;UBERON:0000468!3.82e-08!659;UBERON:0002050!4.36e-08!605;UBERON:0005423!4.36e-08!605;UBERON:0000923!6.28e-08!604;UBERON:0005291!6.28e-08!604;UBERON:0006598!6.28e-08!604;UBERON:0002532!6.28e-08!604;UBERON:0001950!9.84e-08!20;UBERON:0001737!1.50e-07!9;UBERON:0000063!1.60e-07!97;UBERON:0000483!3.75e-07!309;UBERON:0004119!3.94e-07!169;UBERON:0000925!3.94e-07!169;UBERON:0006595!3.94e-07!169;UBERON:0000119!5.48e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.55e-11;34!UBERON:0002020;1.55e-11;34!UBERON:0001893;1.67e-11;34!UBERON:0002791;3.24e-11;32!UBERON:0001869;4.62e-11;32!UBERON:0002780;7.16e-10;41!UBERON:0001890;7.16e-10;41!UBERON:0000073;1.29e-09;53!UBERON:0002616;1.29e-09;53!UBERON:0000956;1.76e-09;25!UBERON:0000203;1.76e-09;25!UBERON:0001017;9.66e-09;75!UBERON:0002619;1.11e-08;22!UBERON:0000955;3.49e-08;68!UBERON:0001950;9.27e-08;20!UBERON:0001737;1.39e-07;9!UBERON:0001557;1.39e-07;9!UBERON:0001016;2.69e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.13e-22,81;UBERON:0011216,1.79e-20,223;UBERON:0001016,1.35e-19,89;UBERON:0000955,5.74e-18,68;UBERON:0006238,5.74e-18,68;UBERON:0001049,1.39e-17,56;UBERON:0005068,1.39e-17,56;UBERON:0006241,1.39e-17,56;UBERON:0007135,1.39e-17,56;UBERON:0000073,5.92e-16,53;UBERON:0002616,5.92e-16,53;UBERON:0003075,6.75e-15,82;UBERON:0007284,6.75e-15,82;UBERON:0004121,2.23e-14,171;UBERON:0000924,2.23e-14,171;UBERON:0006601,2.23e-14,171;UBERON:0010371,5.95e-14,104;UBERON:0003528,1.71e-13,34;UBERON:0002020,1.71e-13,34;UBERON:0001893,2.22e-13,34;UBERON:0002346,2.96e-13,86;UBERON:0003056,3.35e-13,61;UBERON:0002780,3.64e-13,41;UBERON:0001890,3.64e-13,41;UBERON:0003080,3.64e-13,41;UBERON:0006240,3.64e-13,41;UBERON:0002791,2.17e-12,32;UBERON:0001869,3.56e-12,32;UBERON:0000956,1.73e-09,25;UBERON:0000203,1.73e-09,25;UBERON:0010314,3.31e-09,132;UBERON:0002619,1.10e-08,22;UBERON:0000922,3.31e-08,592;UBERON:0001950,9.15e-08,20;UBERON:0005423,1.37e-07,581;UBERON:0001737,1.40e-07,9;UBERON:0004119,1.78e-07,160;UBERON:0000925,1.78e-07,160;UBERON:0006595,1.78e-07,160;UBERON:0000025,3.50e-07,192;UBERON:0000483,3.97e-07,306;UBERON:0000119,5.81e-07,309 | |||
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| |||
|short_description=p1@SPECC1 | |||
}} |
Latest revision as of 01:07, 19 September 2015
Short description: | p1@SPECC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPECC1_5end |
Coexpression cluster: | C3613_optic_Hep2_corpus_lens_Mesenchymal_globus_Chondrocyte |
Association with transcript: | 0bp_to_ENST00000395522, ENST00000395525, ENST00000395527, ENST00000536879, uc002gwt.2, uc002gwu.2, uc002gwv.2, uc010vzf.1_5end |
EntrezGene: | SPECC1 |
HGNC: | 30615 |
UniProt: | Q5M775F5H2Z1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.44e-22 | 253 |
endo-epithelial cell | 2.90e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.16e-17 | 106 |
cell type cancer | 3.21e-13 | 143 |
cancer | 2.16e-09 | 235 |
disease of cellular proliferation | 3.59e-09 | 239 |
reproductive organ cancer | 1.72e-07 | 29 |