FFCP PHASE1:Hg19::chr10:71561649..71561703,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TAT6,E7EX21 | |UniProt=Q5TAT6,E7EX21 | ||
|association_with_transcript=0bp_to_ENST00000354547,ENST00000357811,ENST00000398978,ENST00000479733_5end | |association_with_transcript=0bp_to_ENST00000354547,ENST00000357811,ENST00000398978,ENST00000479733_5end | ||
|cluster_id=chr10:71561649..71561703,+ | |||
|coexpression_cluster_id=C3039 | |||
|description=CAGE_peak_1_at_COL13A1_5end | |description=CAGE_peak_1_at_COL13A1_5end | ||
|id=chr10:71561649..71561703,+ | |id=chr10:71561649..71561703,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.15e-30!180;CL:0000222!1.14e-24!119;CL:0000183!4.28e-20!59;CL:0000057!3.45e-18!75;CL:0000187!6.82e-18!54;CL:0000192!7.29e-18!42;CL:0000514!7.29e-18!42;CL:0000680!8.13e-18!57;CL:0000056!8.13e-18!57;CL:0000355!8.13e-18!57;CL:0000393!1.54e-16!60;CL:0000211!1.54e-16!60;CL:0000359!1.19e-15!32;CL:0002321!4.37e-12!248;CL:0000220!7.35e-12!246;CL:0002139!9.72e-11!24;CL:0000115!1.90e-10!35;CL:0002078!3.85e-09!44;CL:0000071!4.04e-09!18;CL:0002546!4.04e-09!18;CL:0000213!5.49e-08!57;CL:0000215!5.49e-08!57;CL:0002494!1.45e-07!16;CL:0002620!4.77e-07!23 | |ontology_enrichment_celltype=CL:0000055!8.15e-30!180;CL:0000222!1.14e-24!119;CL:0000183!4.28e-20!59;CL:0000057!3.45e-18!75;CL:0000187!6.82e-18!54;CL:0000192!7.29e-18!42;CL:0000514!7.29e-18!42;CL:0000680!8.13e-18!57;CL:0000056!8.13e-18!57;CL:0000355!8.13e-18!57;CL:0000393!1.54e-16!60;CL:0000211!1.54e-16!60;CL:0000359!1.19e-15!32;CL:0002321!4.37e-12!248;CL:0000220!7.35e-12!246;CL:0002139!9.72e-11!24;CL:0000115!1.90e-10!35;CL:0002078!3.85e-09!44;CL:0000071!4.04e-09!18;CL:0002546!4.04e-09!18;CL:0000213!5.49e-08!57;CL:0000215!5.49e-08!57;CL:0002494!1.45e-07!16;CL:0002620!4.77e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.87e-17;32!CL:0000192;4.05e-15;43!CL:0002139;1.12e-11;24!CL:0000115;1.11e-10;36!CL:0000187;2.80e-10;55!CL:0000071;8.69e-10;18!CL:0000057;1.38e-08;73!CL:0002494;2.25e-08;16!CL:0000393;4.18e-08;61!CL:0000211;4.18e-08;61!CL:0002620;1.09e-07;23!CL:0002539;1.69e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.09e-24,121;CL:0000192,7.92e-21,43;CL:0000514,7.92e-21,43;CL:0000057,6.18e-20,76;CL:0000187,2.15e-19,55;CL:0000680,2.42e-19,58;CL:0000056,2.42e-19,58;CL:0000355,2.42e-19,58;CL:0000359,8.07e-18,32;CL:0000393,7.54e-17,61;CL:0000211,7.54e-17,61;CL:0000115,3.81e-12,36;CL:0002139,1.14e-11,24;CL:0002321,2.12e-11,250;CL:0000071,8.82e-10,18;CL:0002546,8.82e-10,18;CL:0002078,2.70e-09,45;CL:0002494,1.72e-08,16;CL:0002620,1.32e-07,23;CL:0002539,1.70e-07,10;CL:0000213,5.54e-07,58;CL:0000215,5.54e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;4.05e-15;43!CL:0000355;4.34e-10;58!CL:0002546;8.69e-10;18!CL:0000222;5.43e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.64e-34!79;UBERON:0007798!2.64e-34!79;UBERON:0000055!1.29e-28!69;UBERON:0004872!5.28e-28!84;UBERON:0001981!9.02e-27!60;UBERON:0007500!9.02e-27!60;UBERON:0004537!9.02e-27!60;UBERON:0006965!9.02e-27!60;UBERON:0004535!1.22e-26!110;UBERON:0001009!2.22e-26!113;UBERON:0003914!2.00e-25!118;UBERON:0001637!3.95e-22!42;UBERON:0003509!3.95e-22!42;UBERON:0004572!3.95e-22!42;UBERON:0000119!2.36e-20!312;UBERON:0000914!3.63e-19!83;UBERON:0002329!3.63e-19!83;UBERON:0003077!3.63e-19!83;UBERON:0003059!3.63e-19!83;UBERON:0007282!3.63e-19!83;UBERON:0009618!3.63e-19!83;UBERON:0007285!3.63e-19!83;UBERON:0000477!4.74e-19!286;UBERON:0000483!4.85e-19!309;UBERON:0004290!8.78e-19!70;UBERON:0004111!5.69e-18!241;UBERON:0000490!5.84e-18!138;UBERON:0004573!5.89e-18!33;UBERON:0004571!5.89e-18!33;UBERON:0005256!1.81e-17!143;UBERON:0000468!2.65e-17!659;UBERON:0001134!2.97e-17!61;UBERON:0002036!2.97e-17!61;UBERON:0003082!2.97e-17!61;UBERON:0002385!3.91e-17!63;UBERON:0001015!3.91e-17!63;UBERON:0000383!3.91e-17!63;UBERON:0000486!2.49e-15!82;UBERON:0000475!7.68e-15!365;UBERON:0000025!1.24e-14!194;UBERON:0000467!8.53e-14!625;UBERON:0000480!1.49e-13!626;UBERON:0000481!1.93e-13!347;UBERON:0002100!4.97e-13!216;UBERON:0000947!4.96e-12!21;UBERON:0010191!4.96e-12!21;UBERON:0000922!8.78e-10!612;UBERON:0000487!8.79e-10!22;UBERON:0001986!4.04e-09!18;UBERON:0004638!4.04e-09!18;UBERON:0004852!4.04e-09!18;UBERON:0003104!5.11e-09!238;UBERON:0009142!5.11e-09!238;UBERON:0006914!6.92e-09!25;UBERON:0002050!7.65e-09!605;UBERON:0005423!7.65e-09!605;UBERON:0000923!1.21e-08!604;UBERON:0005291!1.21e-08!604;UBERON:0006598!1.21e-08!604;UBERON:0002532!1.21e-08!604;UBERON:0000948!7.43e-08!24;UBERON:0005498!7.43e-08!24;UBERON:0004140!7.43e-08!24;UBERON:0009881!7.43e-08!24;UBERON:0004141!7.43e-08!24;UBERON:0003084!7.43e-08!24;UBERON:0007005!7.43e-08!24;UBERON:0004139!7.43e-08!24;UBERON:0004291!7.43e-08!24;UBERON:0007100!1.79e-07!27;UBERON:0000926!4.19e-07!448;UBERON:0004120!4.19e-07!448;UBERON:0006603!4.19e-07!448;UBERON:0003103!4.31e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.62e-19;33!UBERON:0004571;5.62e-19;33!UBERON:0001637;9.08e-19;42!UBERON:0003509;9.08e-19;42!UBERON:0004572;9.08e-19;42!UBERON:0007500;6.20e-16;56!UBERON:0001981;6.20e-16;56!UBERON:0004537;6.20e-16;56!UBERON:0002049;2.93e-15;75!UBERON:0007798;2.93e-15;75!UBERON:0000055;4.82e-15;65!UBERON:0000947;1.12e-13;21!UBERON:0010191;1.12e-13;21!UBERON:0003914;3.42e-12;74!UBERON:0000487;3.00e-10;22!UBERON:0004638;8.69e-10;18!UBERON:0001986;8.69e-10;18!UBERON:0004852;8.69e-10;18!UBERON:0004535;3.34e-09;109!UBERON:0001009;5.87e-09;112!UBERON:0006914;5.53e-08;25!UBERON:0000948;8.01e-08;22!UBERON:0004237;1.69e-07;10!UBERON:0004695;1.69e-07;10!UBERON:0002111;1.69e-07;10!UBERON:0004178;1.69e-07;10!UBERON:0000490;2.51e-07;33!UBERON:0000025;3.61e-07;93 | |||
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| ||
|short_description=p1@COL13A1 | |short_description=p1@COL13A1 | ||
}} | }} |
Latest revision as of 01:16, 19 September 2015
Short description: | p1@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL13A1_5end |
Coexpression cluster: | C3039_Pericytes_Smooth_alveolar_Fibroblast_fibrosarcoma_Lens_Meningeal |
Association with transcript: | 0bp_to_ENST00000354547, ENST00000357811, ENST00000398978, ENST00000479733_5end |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | Q5TAT6E7EX21 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.09e-24 | 121 |
smooth muscle cell | 7.92e-21 | 43 |
smooth muscle myoblast | 7.92e-21 | 43 |
fibroblast | 6.18e-20 | 76 |
muscle cell | 2.15e-19 | 55 |
muscle precursor cell | 2.42e-19 | 58 |
myoblast | 2.42e-19 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-19 | 58 |
vascular associated smooth muscle cell | 8.07e-18 | 32 |
electrically responsive cell | 7.54e-17 | 61 |
electrically active cell | 7.54e-17 | 61 |
endothelial cell | 3.81e-12 | 36 |
endothelial cell of vascular tree | 1.14e-11 | 24 |
embryonic cell | 2.12e-11 | 250 |
blood vessel endothelial cell | 8.82e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.82e-10 | 18 |
meso-epithelial cell | 2.70e-09 | 45 |
cardiocyte | 1.72e-08 | 16 |
skin fibroblast | 1.32e-07 | 23 |
aortic smooth muscle cell | 1.70e-07 | 10 |
lining cell | 5.54e-07 | 58 |
barrier cell | 5.54e-07 | 58 |