FFCP PHASE1:Hg19::chr22:19166235..19166238,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6576 | |EntrezGene=6576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10979 | |HGNC=10979 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000470922_5end | |association_with_transcript=13bp_to_ENST00000470922_5end | ||
|cluster_id=chr22:19166235..19166238,- | |||
|coexpression_cluster_id=C4087 | |coexpression_cluster_id=C4087 | ||
|description=CAGE_peak_4_at_SLC25A1_5end | |description=CAGE_peak_4_at_SLC25A1_5end | ||
|id=chr22:19166235..19166238,- | |id=chr22:19166235..19166238,- | ||
|ontology_enrichment_celltype=CL:0000548!5.59e-27!679;CL:0000004!5.59e-27!679;CL:0000255!5.59e-27!679;CL:0000012!2.70e-26!682;CL:0000055!2.16e-21!180;CL:0000144!3.72e-21!625;CL:0002371!2.46e-20!591;CL:0002321!3.19e-18!248;CL:0000220!4.01e-18!246;CL:0000183!3.43e-17!59;CL:0000003!3.08e-15!722;CL:0000187!3.81e-15!54;CL:0000680!8.86e-15!57;CL:0000056!8.86e-15!57;CL:0000355!8.86e-15!57;CL:0000393!6.15e-14!60;CL:0000211!6.15e-14!60;CL:0000192!1.29e-13!42;CL:0000514!1.29e-13!42;CL:0000222!1.82e-11!119;CL:0000359!2.01e-11!32;CL:0000066!1.03e-09!254;CL:0000136!4.98e-08!15;CL:0000057!1.28e-07!75;CL:0000063!1.42e-07!578;CL:0000325!2.63e-07!39 | |ontology_enrichment_celltype=CL:0000548!5.59e-27!679;CL:0000004!5.59e-27!679;CL:0000255!5.59e-27!679;CL:0000012!2.70e-26!682;CL:0000055!2.16e-21!180;CL:0000144!3.72e-21!625;CL:0002371!2.46e-20!591;CL:0002321!3.19e-18!248;CL:0000220!4.01e-18!246;CL:0000183!3.43e-17!59;CL:0000003!3.08e-15!722;CL:0000187!3.81e-15!54;CL:0000680!8.86e-15!57;CL:0000056!8.86e-15!57;CL:0000355!8.86e-15!57;CL:0000393!6.15e-14!60;CL:0000211!6.15e-14!60;CL:0000192!1.29e-13!42;CL:0000514!1.29e-13!42;CL:0000222!1.82e-11!119;CL:0000359!2.01e-11!32;CL:0000066!1.03e-09!254;CL:0000136!4.98e-08!15;CL:0000057!1.28e-07!75;CL:0000063!1.42e-07!578;CL:0000325!2.63e-07!39 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.32e-11;32!CL:0000192;1.02e-10;43!CL:0000187;5.80e-10;55!CL:0000136;1.67e-08;13!CL:0000393;2.27e-08;61!CL:0000211;2.27e-08;61!CL:1000449;6.63e-08;15!CL:1000507;3.49e-07;10!CL:1000494;3.49e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.29e-16,58;CL:0000056,1.29e-16,58;CL:0000355,1.29e-16,58;CL:0000187,1.40e-16,55;CL:0000393,3.76e-16,61;CL:0000211,3.76e-16,61;CL:0000192,2.03e-15,43;CL:0000514,2.03e-15,43;CL:0000359,5.11e-12,32;CL:0002321,1.13e-11,250;CL:0000222,2.02e-10,121;CL:0000136,3.43e-09,15;CL:1000449,3.74e-07,15;CL:1000507,8.16e-07,10;CL:1000494,8.16e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.02e-10;43!CL:0000355;7.25e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.66e-17!143;UBERON:0000914!1.75e-16!83;UBERON:0002329!1.75e-16!83;UBERON:0003077!1.75e-16!83;UBERON:0003059!1.75e-16!83;UBERON:0007282!1.75e-16!83;UBERON:0009618!1.75e-16!83;UBERON:0007285!1.75e-16!83;UBERON:0002100!3.54e-16!216;UBERON:0004290!1.46e-14!70;UBERON:0003104!2.51e-14!238;UBERON:0009142!2.51e-14!238;UBERON:0000486!1.82e-13!82;UBERON:0002385!5.35e-12!63;UBERON:0001015!5.35e-12!63;UBERON:0000383!5.35e-12!63;UBERON:0001134!5.92e-12!61;UBERON:0002036!5.92e-12!61;UBERON:0003082!5.92e-12!61;UBERON:0003914!8.98e-12!118;UBERON:0002049!4.72e-10!79;UBERON:0007798!4.72e-10!79;UBERON:0000490!1.17e-09!138;UBERON:0000481!1.84e-08!347;UBERON:0001637!7.80e-08!42;UBERON:0003509!7.80e-08!42;UBERON:0004572!7.80e-08!42;UBERON:0000055!2.15e-07!69;UBERON:0009569!2.42e-07!113;UBERON:0001981!2.80e-07!60;UBERON:0007500!2.80e-07!60;UBERON:0004537!2.80e-07!60;UBERON:0006965!2.80e-07!60;UBERON:0000475!4.49e-07!365;UBERON:0001737!5.42e-07!9;UBERON:0004872!7.06e-07!84 | |ontology_enrichment_uberon=UBERON:0005256!2.66e-17!143;UBERON:0000914!1.75e-16!83;UBERON:0002329!1.75e-16!83;UBERON:0003077!1.75e-16!83;UBERON:0003059!1.75e-16!83;UBERON:0007282!1.75e-16!83;UBERON:0009618!1.75e-16!83;UBERON:0007285!1.75e-16!83;UBERON:0002100!3.54e-16!216;UBERON:0004290!1.46e-14!70;UBERON:0003104!2.51e-14!238;UBERON:0009142!2.51e-14!238;UBERON:0000486!1.82e-13!82;UBERON:0002385!5.35e-12!63;UBERON:0001015!5.35e-12!63;UBERON:0000383!5.35e-12!63;UBERON:0001134!5.92e-12!61;UBERON:0002036!5.92e-12!61;UBERON:0003082!5.92e-12!61;UBERON:0003914!8.98e-12!118;UBERON:0002049!4.72e-10!79;UBERON:0007798!4.72e-10!79;UBERON:0000490!1.17e-09!138;UBERON:0000481!1.84e-08!347;UBERON:0001637!7.80e-08!42;UBERON:0003509!7.80e-08!42;UBERON:0004572!7.80e-08!42;UBERON:0000055!2.15e-07!69;UBERON:0009569!2.42e-07!113;UBERON:0001981!2.80e-07!60;UBERON:0007500!2.80e-07!60;UBERON:0004537!2.80e-07!60;UBERON:0006965!2.80e-07!60;UBERON:0000475!4.49e-07!365;UBERON:0001737!5.42e-07!9;UBERON:0004872!7.06e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.44e-09;9!UBERON:0001557;9.44e-09;9!UBERON:0006555;6.63e-08;15!UBERON:0004819;6.63e-08;15!UBERON:0001285;6.63e-08;15!UBERON:0007684;6.63e-08;15!UBERON:0004211;3.49e-07;10!UBERON:0009773;3.49e-07;10!UBERON:0001231;3.49e-07;10!UBERON:0004810;3.49e-07;10 | |||
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| ||
|short_description=p4@SLC25A1 | |short_description=p4@SLC25A1 | ||
}} | }} |
Latest revision as of 02:48, 19 September 2015
Short description: | p4@SLC25A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC25A1_5end |
Coexpression cluster: | C4087_Mesenchymal_Adipocyte_Alveolar_Hair_Renal_Fibroblast_Pericytes |
Association with transcript: | 13bp_to_ENST00000470922_5end |
EntrezGene: | SLC25A1 |
HGNC: | 10979 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.29e-16 | 58 |
myoblast | 1.29e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.29e-16 | 58 |
muscle cell | 1.40e-16 | 55 |
electrically responsive cell | 3.76e-16 | 61 |
electrically active cell | 3.76e-16 | 61 |
smooth muscle cell | 2.03e-15 | 43 |
smooth muscle myoblast | 2.03e-15 | 43 |
vascular associated smooth muscle cell | 5.11e-12 | 32 |
embryonic cell | 1.13e-11 | 250 |
mesodermal cell | 2.02e-10 | 121 |
fat cell | 3.43e-09 | 15 |
epithelial cell of nephron | 3.74e-07 | 15 |
kidney tubule cell | 8.16e-07 | 10 |
nephron tubule epithelial cell | 8.16e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.90e-19 | 78 |
dense mesenchyme tissue | 1.61e-17 | 73 |
somite | 1.72e-17 | 71 |
presomitic mesoderm | 1.72e-17 | 71 |
presumptive segmental plate | 1.72e-17 | 71 |
dermomyotome | 1.72e-17 | 71 |
trunk paraxial mesoderm | 1.72e-17 | 71 |
mesenchyme | 5.48e-17 | 160 |
entire embryonic mesenchyme | 5.48e-17 | 160 |
paraxial mesoderm | 5.88e-17 | 72 |
presumptive paraxial mesoderm | 5.88e-17 | 72 |
multilaminar epithelium | 1.06e-15 | 83 |
trunk | 1.24e-14 | 199 |
muscle tissue | 1.77e-14 | 64 |
musculature | 1.77e-14 | 64 |
musculature of body | 1.77e-14 | 64 |
skeletal muscle tissue | 2.15e-14 | 62 |
striated muscle tissue | 2.15e-14 | 62 |
myotome | 2.15e-14 | 62 |
trunk mesenchyme | 5.09e-14 | 122 |
unilaminar epithelium | 7.98e-12 | 148 |
epithelial tube | 1.29e-09 | 117 |
larynx | 1.09e-08 | 9 |
vasculature | 5.07e-08 | 78 |
vascular system | 5.07e-08 | 78 |
cell layer | 6.15e-08 | 309 |
epithelium | 7.49e-08 | 306 |
nephron epithelium | 3.74e-07 | 15 |
renal tubule | 3.74e-07 | 15 |
nephron tubule | 3.74e-07 | 15 |
nephron | 3.74e-07 | 15 |
uriniferous tubule | 3.74e-07 | 15 |
nephrogenic mesenchyme | 3.74e-07 | 15 |
nephron tubule epithelium | 8.16e-07 | 10 |
subdivision of trunk | 9.11e-07 | 112 |