FFCP PHASE1:Hg19::chr12:54431666..54431676,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3221 | |EntrezGene=3221 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5126 | |HGNC=5126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=28bp_to_ENST00000507650_5end | |association_with_transcript=28bp_to_ENST00000507650_5end | ||
|cluster_id=chr12:54431666..54431676,+ | |||
|coexpression_cluster_id=C89 | |coexpression_cluster_id=C89 | ||
|description=CAGE_peak_16_at_HOXC4_5end | |description=CAGE_peak_16_at_HOXC4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000148!7.14e-09!10;CL:0000541!7.14e-09!10;CL:0000214!1.79e-08!3 | |ontology_enrichment_celltype=CL:0000148!7.14e-09!10;CL:0000541!7.14e-09!10;CL:0000214!1.79e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002253;5.96e-34;2!CL:0002563;9.45e-18;4 | |ontology_enrichment_celltype_v019=CL:0002253;5.96e-34;2!CL:0002563;9.45e-18;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002253,5.04e-34,2;CL:0002563,8.69e-18,4 | |||
|ontology_enrichment_development_v019=UBERON:0003104;6.52e-10;31!UBERON:0003918;6.34e-08;10!UBERON:0007687;6.34e-08;10 | |ontology_enrichment_development_v019=UBERON:0003104;6.52e-10;31!UBERON:0003918;6.34e-08;10!UBERON:0007687;6.34e-08;10 | ||
|ontology_enrichment_disease=DOID:154!4.15e-12!2;DOID:4236!4.15e-12!2;DOID:2355!4.01e-07!1;DOID:5409!7.17e-07!4;DOID:1115!8.53e-07!20 | |ontology_enrichment_disease=DOID:154!4.15e-12!2;DOID:4236!4.15e-12!2;DOID:2355!4.01e-07!1;DOID:5409!7.17e-07!4;DOID:1115!8.53e-07!20 | ||
|ontology_enrichment_disease_v019=DOID:5409;7.35e-18;4!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | |ontology_enrichment_disease_v019=DOID:5409;7.35e-18;4!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,7.35e-18,4;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0006915!1.79e-08!3;UBERON:0002018!1.79e-08!3;UBERON:0002217!1.79e-08!3;UBERON:0007616!1.79e-08!3;UBERON:0001301!4.78e-07!1 | |ontology_enrichment_uberon=UBERON:0006915!1.79e-08!3;UBERON:0002018!1.79e-08!3;UBERON:0002217!1.79e-08!3;UBERON:0007616!1.79e-08!3;UBERON:0001301!4.78e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001052;9.45e-18;4!UBERON:0001242;9.45e-18;4!UBERON:0001262;9.45e-18;4!UBERON:0004786;9.45e-18;4!UBERON:0004808;9.45e-18;4!UBERON:0001277;9.45e-18;4!UBERON:0004907;1.71e-14;5!UBERON:0000485;9.43e-11;7!UBERON:0003929;9.43e-11;7!UBERON:0003350;1.41e-09;8!UBERON:0001155;1.16e-08;9!UBERON:0005911;2.46e-07;36!UBERON:0000059;2.55e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0001052;9.45e-18;4!UBERON:0001242;9.45e-18;4!UBERON:0001262;9.45e-18;4!UBERON:0004786;9.45e-18;4!UBERON:0004808;9.45e-18;4!UBERON:0001277;9.45e-18;4!UBERON:0004907;1.71e-14;5!UBERON:0000485;9.43e-11;7!UBERON:0003929;9.43e-11;7!UBERON:0003350;1.41e-09;8!UBERON:0001155;1.16e-08;9!UBERON:0005911;2.46e-07;36!UBERON:0000059;2.55e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,8.69e-18,4;UBERON:0001242,8.69e-18,4;UBERON:0001262,8.69e-18,4;UBERON:0004786,8.69e-18,4;UBERON:0004808,8.69e-18,4;UBERON:0001277,8.69e-18,4;UBERON:0004907,1.60e-14,5;UBERON:0003350,1.35e-09,8;UBERON:0001155,1.12e-08,9;UBERON:0000485,1.12e-08,9;UBERON:0000059,2.47e-07,11 | |||
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|short_description=p16@HOXC4 | |short_description=p16@HOXC4 | ||
}} | }} |
Latest revision as of 05:05, 19 September 2015
Short description: | p16@HOXC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_HOXC4_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 28bp_to_ENST00000507650_5end |
EntrezGene: | HOXC4 |
HGNC: | 5126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 5.04e-34 | 2 |
intestinal epithelial cell | 8.69e-18 | 4 |
Ontology term | p-value | n |
---|---|---|
rectum | 8.69e-18 | 4 |
intestinal mucosa | 8.69e-18 | 4 |
wall of intestine | 8.69e-18 | 4 |
gastrointestinal system mucosa | 8.69e-18 | 4 |
gastrointestinal system epithelium | 8.69e-18 | 4 |
intestinal epithelium | 8.69e-18 | 4 |
lower digestive tract | 1.60e-14 | 5 |
epithelium of mucosa | 1.35e-09 | 8 |
colon | 1.12e-08 | 9 |
simple columnar epithelium | 1.12e-08 | 9 |
large intestine | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 7.35e-18 | 4 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |