FFCP PHASE1:Hg19::chr14:22924207..22924227,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12260 | |HGNC=12260 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000390474_5end | |association_with_transcript=-13bp_to_ENST00000390474_5end | ||
|cluster_id=chr14:22924207..22924227,+ | |||
|coexpression_cluster_id=C121 | |||
|description=CAGE_peak_1_at_TRDJ4_5end | |description=CAGE_peak_1_at_TRDJ4_5end | ||
|id=chr14:22924207..22924227,+ | |id=chr14:22924207..22924227,+ | ||
|ontology_enrichment_celltype=CL:0000623!6.03e-13!3;CL:0000825!6.03e-13!3;CL:0000791!1.58e-12!18;CL:0000789!1.58e-12!18;CL:0002420!1.58e-12!18;CL:0002419!1.58e-12!18;CL:0000790!1.58e-12!18;CL:0000767!2.57e-12!3;CL:0000893!3.87e-09!2;CL:0002489!3.87e-09!2;CL:0000809!3.87e-09!2;CL:0000808!3.87e-09!2;CL:0000894!3.87e-09!2;CL:0000806!3.87e-09!2;CL:0000807!3.87e-09!2;CL:0000805!3.87e-09!2;CL:0002425!3.87e-09!2;CL:0000084!1.19e-08!25;CL:0000827!1.19e-08!25;CL:0000625!1.53e-08!11;CL:0000838!6.97e-07!52 | |ontology_enrichment_celltype=CL:0000623!6.03e-13!3;CL:0000825!6.03e-13!3;CL:0000791!1.58e-12!18;CL:0000789!1.58e-12!18;CL:0002420!1.58e-12!18;CL:0002419!1.58e-12!18;CL:0000790!1.58e-12!18;CL:0000767!2.57e-12!3;CL:0000893!3.87e-09!2;CL:0002489!3.87e-09!2;CL:0000809!3.87e-09!2;CL:0000808!3.87e-09!2;CL:0000894!3.87e-09!2;CL:0000806!3.87e-09!2;CL:0000807!3.87e-09!2;CL:0000805!3.87e-09!2;CL:0002425!3.87e-09!2;CL:0000084!1.19e-08!25;CL:0000827!1.19e-08!25;CL:0000625!1.53e-08!11;CL:0000838!6.97e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0002127;1.46e-50;1!CL:0000911;1.46e-50;1!CL:0000814;1.46e-50;1!CL:0000791;4.43e-12;18!CL:0000789;4.43e-12;18!CL:0002419;4.43e-12;18!CL:0000084;5.38e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,1.46e-50,1;CL:0000914,1.46e-50,1;CL:0000911,1.46e-50,1;CL:0000814,1.46e-50,1;CL:0002042,1.46e-50,1;CL:0002039,1.46e-50,1;CL:0002040,1.46e-50,1;CL:0002041,1.46e-50,1;CL:0000893,4.32e-26,2;CL:0002489,4.32e-26,2;CL:0000809,4.32e-26,2;CL:0000808,4.32e-26,2;CL:0000894,4.32e-26,2;CL:0000806,4.32e-26,2;CL:0000807,4.32e-26,2;CL:0000805,4.32e-26,2;CL:0002425,4.32e-26,2;CL:0000791,4.31e-12,18;CL:0000789,4.31e-12,18;CL:0002420,4.31e-12,18;CL:0002419,4.31e-12,18;CL:0000790,4.31e-12,18;CL:0000084,5.27e-09,25;CL:0000827,5.27e-09,25 | |||
|ontology_enrichment_development_v019=CL:0002425;4.32e-26;2!CL:0000790;4.43e-12;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.86e-19!7;UBERON:0002370!3.17e-16!4;UBERON:0005058!3.17e-16!4;UBERON:0009113!3.17e-16!4;UBERON:0003295!3.17e-16!4;UBERON:0005562!3.17e-16!4;UBERON:0001042!1.85e-13!10;UBERON:0009145!1.85e-13!10;UBERON:0006562!3.55e-12!11;UBERON:0003351!7.73e-11!6;UBERON:0001557!9.05e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.56e-26;2!UBERON:0005058;5.56e-26;2!UBERON:0009113;5.56e-26;2!UBERON:0004177;2.94e-11;5!UBERON:0005057;2.94e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.11e-50,4;UBERON:0005058,3.11e-50,4;UBERON:0009113,3.11e-50,4;UBERON:0003295,3.11e-50,4;UBERON:0005562,3.11e-50,4;UBERON:0003351,5.98e-34,6;UBERON:0004177,2.74e-29,7;UBERON:0005057,2.74e-29,7;UBERON:0000974,6.99e-21,10;UBERON:0003408,6.99e-21,10;UBERON:0001042,6.99e-21,10;UBERON:0009145,6.99e-21,10;UBERON:0006562,4.28e-19,11;UBERON:0009722,4.28e-19,11;UBERON:0007690,4.28e-19,11;UBERON:0008814,4.07e-12,18;UBERON:0001557,1.55e-11,19;UBERON:0004807,3.65e-08,28;UBERON:0000077,6.44e-08,29;UBERON:0002368,9.98e-07,35 | |||
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| ||
|short_description=p1@TRDJ4 | |short_description=p1@TRDJ4 | ||
}} | }} |
Latest revision as of 05:33, 19 September 2015
Short description: | p1@TRDJ4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRDJ4_5end |
Coexpression cluster: | C121_NK_Natural_CD8_CD4_anaplastic_chronic_B |
Association with transcript: | -13bp_to_ENST00000390474_5end |
EntrezGene: | NA |
HGNC: | 12260 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 1.46e-50 | 1 |
immature NK T cell | 1.46e-50 | 1 |
effector T cell | 1.46e-50 | 1 |
mature NK T cell | 1.46e-50 | 1 |
immature NK T cell stage IV | 1.46e-50 | 1 |
immature NK T cell stage I | 1.46e-50 | 1 |
immature NK T cell stage II | 1.46e-50 | 1 |
immature NK T cell stage III | 1.46e-50 | 1 |
thymocyte | 4.32e-26 | 2 |
double negative thymocyte | 4.32e-26 | 2 |
double-positive, alpha-beta thymocyte | 4.32e-26 | 2 |
DN4 thymocyte | 4.32e-26 | 2 |
DN1 thymic pro-T cell | 4.32e-26 | 2 |
DN2 thymocyte | 4.32e-26 | 2 |
DN3 thymocyte | 4.32e-26 | 2 |
immature single positive thymocyte | 4.32e-26 | 2 |
early T lineage precursor | 4.32e-26 | 2 |
mature alpha-beta T cell | 4.31e-12 | 18 |
alpha-beta T cell | 4.31e-12 | 18 |
immature T cell | 4.31e-12 | 18 |
mature T cell | 4.31e-12 | 18 |
immature alpha-beta T cell | 4.31e-12 | 18 |
T cell | 5.27e-09 | 25 |
pro-T cell | 5.27e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.11e-50 | 4 |
hemolymphoid system gland | 3.11e-50 | 4 |
thymic region | 3.11e-50 | 4 |
pharyngeal gland | 3.11e-50 | 4 |
thymus primordium | 3.11e-50 | 4 |
pharyngeal epithelium | 5.98e-34 | 6 |
hemopoietic organ | 2.74e-29 | 7 |
immune organ | 2.74e-29 | 7 |
neck | 6.99e-21 | 10 |
gland of gut | 6.99e-21 | 10 |
chordate pharynx | 6.99e-21 | 10 |
pharyngeal region of foregut | 6.99e-21 | 10 |
pharynx | 4.28e-19 | 11 |
entire pharyngeal arch endoderm | 4.28e-19 | 11 |
early pharyngeal endoderm | 4.28e-19 | 11 |
pharyngeal arch system | 4.07e-12 | 18 |
upper respiratory tract | 1.55e-11 | 19 |
respiratory system epithelium | 3.65e-08 | 28 |
mixed endoderm/mesoderm-derived structure | 6.44e-08 | 29 |
endocrine gland | 9.98e-07 | 35 |