FFCP PHASE1:Hg19::chr6:10529946..10529970,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2651 | |EntrezGene=2651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |HGNC=4204 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-59bp_to_ENST00000485764_5end | |association_with_transcript=-59bp_to_ENST00000485764_5end | ||
|cluster_id=chr6:10529946..10529970,+ | |||
|coexpression_cluster_id=C80 | |coexpression_cluster_id=C80 | ||
|description=CAGE_peak_7_at_GCNT2_5end | |description=CAGE_peak_7_at_GCNT2_5end | ||
|id=chr6:10529946..10529970,+ | |id=chr6:10529946..10529970,+ | ||
|ontology_enrichment_celltype=CL:0002009!4.81e-12!65;CL:0000860!7.96e-12!45;CL:0002194!1.18e-10!63;CL:0000576!1.18e-10!63;CL:0000040!1.18e-10!63;CL:0000559!1.18e-10!63;CL:0000557!1.24e-10!71;CL:0000839!1.28e-10!70;CL:0002057!1.48e-10!42;CL:0000738!6.37e-09!140;CL:0000766!1.16e-08!76;CL:0000763!1.64e-08!112;CL:0000049!1.64e-08!112;CL:0002087!3.86e-08!119;CL:0002031!5.48e-08!124;CL:0000990!3.32e-07!8;CL:0000037!3.72e-07!172;CL:0000566!3.72e-07!172;CL:0000453!4.27e-07!5;CL:0002032!6.32e-07!165;CL:0000837!6.32e-07!165 | |ontology_enrichment_celltype=CL:0002009!4.81e-12!65;CL:0000860!7.96e-12!45;CL:0002194!1.18e-10!63;CL:0000576!1.18e-10!63;CL:0000040!1.18e-10!63;CL:0000559!1.18e-10!63;CL:0000557!1.24e-10!71;CL:0000839!1.28e-10!70;CL:0002057!1.48e-10!42;CL:0000738!6.37e-09!140;CL:0000766!1.16e-08!76;CL:0000763!1.64e-08!112;CL:0000049!1.64e-08!112;CL:0002087!3.86e-08!119;CL:0002031!5.48e-08!124;CL:0000990!3.32e-07!8;CL:0000037!3.72e-07!172;CL:0000566!3.72e-07!172;CL:0000453!4.27e-07!5;CL:0002032!6.32e-07!165;CL:0000837!6.32e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000453;1.49e-19;5!CL:0000148;2.99e-13;10!CL:0000990;1.10e-10;8!CL:0000147;3.02e-09;14!CL:0001014;6.08e-09;2!CL:0001016;6.08e-09;2!CL:0000451;1.15e-08;10!CL:0000075;1.51e-07;27!CL:1000497;5.40e-07;17!CL:0002518;5.40e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.59e-19,5;CL:0000148,2.88e-13,10;CL:0000541,2.88e-13,10;CL:0000990,1.14e-10,8;CL:0000147,2.95e-09,14;CL:0001014,6.11e-09,2;CL:0001016,6.11e-09,2;CL:0000451,1.18e-08,10;CL:0000075,1.47e-07,27;CL:1000497,5.35e-07,17;CL:0002518,5.35e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.09e-08;29 | |||
|ontology_enrichment_disease=DOID:305!3.16e-10!106;DOID:0050687!5.17e-07!143 | |ontology_enrichment_disease=DOID:305!3.16e-10!106;DOID:0050687!5.17e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:3910;1.10e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.69e-08,106;DOID:3910,7.78e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.30e-09!9;UBERON:0002371!1.13e-08!80;UBERON:0008947!1.03e-07!38;UBERON:0003258!1.03e-07!38;UBERON:0001474!2.70e-07!86;UBERON:0000058!5.45e-07!26 | |ontology_enrichment_uberon=UBERON:0001737!1.30e-09!9;UBERON:0002371!1.13e-08!80;UBERON:0008947!1.03e-07!38;UBERON:0003258!1.03e-07!38;UBERON:0001474!2.70e-07!86;UBERON:0000058!5.45e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.52e-09;9!UBERON:0001557;2.52e-09;9!UBERON:0002113;4.08e-08;24!UBERON:0011143;4.08e-08;24!UBERON:0004903;1.10e-07;2!UBERON:0002173;1.10e-07;2!UBERON:0002186;1.10e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.69e-09,9;UBERON:0004903,7.78e-08,2;UBERON:0002173,7.78e-08,2;UBERON:0002186,7.78e-08,2;UBERON:0002113,2.05e-07,26;UBERON:0003918,2.05e-07,26;UBERON:0011143,2.05e-07,26;UBERON:0005095,2.05e-07,26;UBERON:0007687,2.05e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.125542639594803,0.229240217243854,0.246301768349837,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0,0,0.309868802321207,2.98555388223585,0,1.10799081706375,0.401088894940283,0,0,0,0,0.290796477559129,0,0.970336244751265,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0.689491361473237,0.645484683583826,2.70852973188684,0.188242339542605,0,0,0.306083892370903,1.28371610830437,2.55734850319616,0,0.199463657621632,0.426224750532694,0.580418477257168,0.56738522469114,1.24564449799115,0.251248665256743,0.521482918420201,1.08594422352558,0,2.94622108790052,1.58231193720442,0,1.06302149982522,0,0.44931452458598,0.901061357049038,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.764546456250458,1.32171328579026,0.560508562981536,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.527008714158756,0.785874452986276,0,0,0.649094787309367,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01121560067735,1.18009283054671,0.964044119533928,0.882351781859152,0.871517776369625,0.71181185733329,1.48314438976181,1.76599318612811,1.92373578473195,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0.492434012174795,1.17002132569619,0.594524649154913,0,0,0,0,0,0,0,0,0,0.144119953416961,0,4.57184838903617,7.63976851116555,5.86087236050235,0,2.57068731758309,4.80548892550268,6.00235508524214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,1.15523005656622,1.56869953835371,1.46139224653261,0.73886140225013,0,0,0.215915916102139,0,0,0.501689773854853,2.29388645740534,0.831076008928724,0.895499018888713,0.657779629937804,0.522870902049801,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,1.49553699578462,0,1.22520107990516,0.929015875628594,0,0,0,0.199579371432817,0.191505370132367,0.635020748171649,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,1.70481688083848,0,0,0,0,0.140669416410513,0,0,0,1.39473591775749,0.276283915531148,0.755798243562828,0,0.246169610922139,0,0.539210106883961,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0.61221999997337,0,0,1.27126825146383,0,0,0,0,0,0.241192877250816,0,0,0,0,0.980446171670911,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0,0.843992258112108,1.46909527343233,0,0,0,0.176915129006678,0,0,0,0,0.471807930864739,0,0,0.182454789215666,0,1.94224303627274,0,0,0,0.252746318513952,0,0,0,0,0,0,1.70765727617876,0,0,0,0,0.17472666824203,2.40780445460263,0.290268993867255,0.292357268344742,0.164230914106418,0.0969890164884194,0,0,0.137041924646751,0,0,0.195551382734803,3.52698809106748,0,0,0,0,0.171594997861965,0.288109595976299,2.98206085357038,0,1.08723364858891,0.418411385249333,0.713987523454252,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0.717873024576814,0.199679000498991,0,0.669514372325618,0,0,0,0.315132729228895,0,0.202210631562555,0.590564889088493,0.677386656526276,0,0,0,0,0,48.5943605751241,8.51182150013745,0,0,1.26089131678717,0.0524545881349981,0.633602019116439,0.35857467866569,0.191915197319445,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0.855434189421647,1.40963004463334,0.320362237703084,0.78602152549833,1.24271716604159,0.496166021811951,0,6.45500771418748,0,0,0.2506898940227,0,0,0.471162288750703,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0.151649117541648,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3018979126845,6.24464749472807,4.08913485639611,0.655219697692825,1.2288645437686,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,3.42898616795984,0,0.261906694481422,0,0.443568258651136,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,1.54339208493677,0.0679697329768317,0,2.00929529502746,0.111231401892069,0.39246546425257,0,0,0,4.10262423315381,23.4098327064655,1.1436247068265,0,0,0,0,0.207216164163037,0,0,0.860454717640555,0,0,0,0.22910686854405,1.24082554265728,0,0.223710863595585,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0.603851374266694,0.617393264863557,0,0,0.245148321753905,0.942706188406504,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.129177819672012,0,0.112131862580613,0.12729431655633,0.404234377916439,0.217716747896961,0,0.336760265072938,0.430333232356058,0.665320713092027,0.0814032686109745,0,0,0.0898252021065869,0,0.244482888365733,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.125542639594803,0.229240217243854,0.246301768349837,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0,0,0.309868802321207,2.98555388223585,0,1.10799081706375,0.401088894940283,0,0,0,0,0.290796477559129,0,0.970336244751265,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0.689491361473237,0.645484683583826,2.70852973188684,0.188242339542605,0,0,0.306083892370903,1.28371610830437,2.55734850319616,0,0.199463657621632,0.426224750532694,0.580418477257168,0.56738522469114,1.24564449799115,0.251248665256743,0.521482918420201,1.08594422352558,0,2.94622108790052,1.58231193720442,0,1.06302149982522,0,0.44931452458598,0.901061357049038,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.764546456250458,1.32171328579026,0.560508562981536,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.527008714158756,0.785874452986276,0,0,0.649094787309367,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01121560067735,1.18009283054671,0.964044119533928,0.882351781859152,0.871517776369625,0.71181185733329,1.48314438976181,1.76599318612811,1.92373578473195,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0.492434012174795,1.17002132569619,0.594524649154913,0,0,0,0,0,0,0,0,0,0.144119953416961,0,4.57184838903617,7.63976851116555,5.86087236050235,0,2.57068731758309,4.80548892550268,6.00235508524214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,1.15523005656622,1.56869953835371,1.46139224653261,0.73886140225013,0,0,0.215915916102139,0,0,0.501689773854853,2.29388645740534,0.831076008928724,0.895499018888713,0.657779629937804,0.522870902049801,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,1.49553699578462,0,1.22520107990516,0.929015875628594,0,0,0,0.199579371432817,0.191505370132367,0.635020748171649,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,1.70481688083848,0,0,0,0,0.140669416410513,0,0,0,1.39473591775749,0.276283915531148,0.755798243562828,0,0.246169610922139,0,0.539210106883961,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0.61221999997337,0,0,1.27126825146383,0,0,0,0,0,0.241192877250816,0,0,0,0,0.980446171670911,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0,0.843992258112108,1.46909527343233,0,0,0,0.176915129006678,0,0,0,0,0.471807930864739,0,0,0.182454789215666,0,1.94224303627274,0,0,0,0.252746318513952,0,0,0,0,0,0,1.70765727617876,0,0,0,0,0.17472666824203,2.40780445460263,0.290268993867255,0.292357268344742,0.164230914106418,0.0969890164884194,0,0,0.137041924646751,0,0,0.195551382734803,3.52698809106748,0,0,0,0,0.171594997861965,0.288109595976299,2.98206085357038,0,1.08723364858891,0.418411385249333,0.713987523454252,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0.717873024576814,0.199679000498991,0,0.669514372325618,0,0,0,0.315132729228895,0,0.202210631562555,0.590564889088493,0.677386656526276,0,0,0,0,0,48.5943605751241,8.51182150013745,0,0,1.26089131678717,0.0524545881349981,0.633602019116439,0.35857467866569,0.191915197319445,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0.855434189421647,1.40963004463334,0.320362237703084,0.78602152549833,1.24271716604159,0.496166021811951,0,6.45500771418748,0,0,0.2506898940227,0,0,0.471162288750703,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0.151649117541648,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3018979126845,6.24464749472807,4.08913485639611,0.655219697692825,1.2288645437686,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,3.42898616795984,0,0.261906694481422,0,0.443568258651136,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,1.54339208493677,0.0679697329768317,0,2.00929529502746,0.111231401892069,0.39246546425257,0,0,0,4.10262423315381,23.4098327064655,1.1436247068265,0,0,0,0,0.207216164163037,0,0,0.860454717640555,0,0,0,0.22910686854405,1.24082554265728,0,0.223710863595585,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0.603851374266694,0.617393264863557,0,0,0.245148321753905,0.942706188406504,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.129177819672012,0,0.112131862580613,0.12729431655633,0.404234377916439,0.217716747896961,0,0.336760265072938,0.430333232356058,0.665320713092027,0.0814032686109745,0,0,0.0898252021065869,0,0.244482888365733,0,0,0,0.320568492303233 | ||
|short_description=p7@GCNT2 | |short_description=p7@GCNT2 | ||
}} | }} |
Latest revision as of 13:42, 19 September 2015
Short description: | p7@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GCNT2_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | -59bp_to_ENST00000485764_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.59e-19 | 5 |
melanocyte | 2.88e-13 | 10 |
melanoblast | 2.88e-13 | 10 |
conventional dendritic cell | 1.14e-10 | 8 |
pigment cell | 2.95e-09 | 14 |
CD1a-positive Langerhans cell | 6.11e-09 | 2 |
immature CD1a-positive Langerhans cell | 6.11e-09 | 2 |
dendritic cell | 1.18e-08 | 10 |
columnar/cuboidal epithelial cell | 1.47e-07 | 27 |
kidney cell | 5.35e-07 | 17 |
kidney epithelial cell | 5.35e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.69e-09 | 9 |
bronchoalveolar duct junction | 7.78e-08 | 2 |
alveolar duct | 7.78e-08 | 2 |
bronchiole | 7.78e-08 | 2 |
kidney | 2.05e-07 | 26 |
kidney mesenchyme | 2.05e-07 | 26 |
upper urinary tract | 2.05e-07 | 26 |
kidney rudiment | 2.05e-07 | 26 |
kidney field | 2.05e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.69e-08 | 106 |
lung adenocarcinoma | 7.78e-08 | 2 |