FFCP PHASE1:Hg19::chr17:33469299..33469328,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:33469299..33469328,-
|short_description=p1@NLE1
|description=CAGE_peak_1_at_NLE1_5end
|association_with_transcript=0bp_to_ENST00000360831,ENST00000442241,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54475 | |EntrezGene=54475 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19889 | |HGNC=19889 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NVX2,F5GZ79 | |UniProt=Q9NVX2,F5GZ79 | ||
|association_with_transcript=0bp_to_ENST00000360831,ENST00000442241,ENST00000473567,ENST00000479807,ENST00000537697,NM_001014445,NM_018096,uc002hiy.1,uc002hiz.1_5end | |||
|cluster_id=chr17:33469299..33469328,- | |||
|coexpression_cluster_id=C2400 | |||
|description=CAGE_peak_1_at_NLE1_5end | |||
|id=chr17:33469299..33469328,- | |||
|ontology_enrichment_celltype=CL:0000066!1.11e-22!254;CL:0000012!1.61e-18!682;CL:0000548!4.49e-18!679;CL:0000004!4.49e-18!679;CL:0000255!4.49e-18!679;CL:0002321!5.58e-17!248;CL:0000220!2.12e-16!246;CL:0000003!1.75e-12!722;CL:0000144!4.87e-08!625;CL:0000222!1.61e-07!119;CL:0000076!2.09e-07!62;CL:0000055!6.08e-07!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.25e-23,253;CL:0002321,3.79e-17,250;CL:0000222,1.26e-07,121;CL:0000076,1.85e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.53e-19!235;DOID:14566!4.62e-19!239;DOID:0050687!6.24e-12!143;DOID:305!8.97e-10!106;DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:0050686!1.29e-08!137;DOID:1240!7.28e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.51e-19,235;DOID:14566,4.60e-19,239;DOID:0050687,6.22e-12,143;DOID:305,8.95e-10,106;DOID:2531,3.61e-09,51;DOID:0060083,3.61e-09,51;DOID:0050686,1.29e-08,137;DOID:1240,7.27e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.34e-10!238;UBERON:0009142!3.34e-10!238;UBERON:0000072!5.55e-08!46;UBERON:0008947!2.41e-07!38;UBERON:0003258!2.41e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;3.13e-08;37!UBERON:0006554;4.89e-07;30!UBERON:0001008;4.89e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.90e-08,199;UBERON:0000072,1.18e-07,47;UBERON:0008947,2.51e-07,38;UBERON:0003258,2.51e-07,38;UBERON:0000490,4.32e-07,148;UBERON:0005177,5.80e-07,101;UBERON:0007503,8.21e-07,78 | |||
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| ||
|short_description=p1@NLE1 | |||
}} | }} |
Latest revision as of 14:26, 19 September 2015
Short description: | p1@NLE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLE1_5end |
Coexpression cluster: | C2400_Alveolar_embryonic_Mesenchymal_Renal_Smooth_acute_granulocyte |
Association with transcript: | 0bp_to_ENST00000360831, ENST00000442241, ENST00000473567, ENST00000479807, ENST00000537697, NM_001014445, NM_018096, uc002hiy.1, uc002hiz.1_5end |
EntrezGene: | NLE1 |
HGNC: | 19889 |
UniProt: | Q9NVX2F5GZ79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.25e-23 | 253 |
embryonic cell | 3.79e-17 | 250 |
mesodermal cell | 1.26e-07 | 121 |
squamous epithelial cell | 1.85e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.90e-08 | 199 |
segment of respiratory tract | 1.18e-07 | 47 |
respiratory primordium | 2.51e-07 | 38 |
endoderm of foregut | 2.51e-07 | 38 |
unilaminar epithelium | 4.32e-07 | 148 |
trunk region element | 5.80e-07 | 101 |
epithelial vesicle | 8.21e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.51e-19 | 235 |
disease of cellular proliferation | 4.60e-19 | 239 |
cell type cancer | 6.22e-12 | 143 |
carcinoma | 8.95e-10 | 106 |
hematologic cancer | 3.61e-09 | 51 |
immune system cancer | 3.61e-09 | 51 |
organ system cancer | 1.29e-08 | 137 |
leukemia | 7.27e-07 | 39 |