FFCP PHASE1:Hg19::chr1:94374914..94374922,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:94374914..94374922,-
|short_description=p7@GCLM
|description=CAGE_peak_7_at_GCLM_5end
|association_with_transcript=43bp_to_ENST00000370238_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2730 | |EntrezGene=2730 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4312 | |HGNC=4312 | ||
|TSSclassifier=strong | |||
|UniProt=P48507 | |UniProt=P48507 | ||
|association_with_transcript=43bp_to_ENST00000370238_5end | |||
|cluster_id=chr1:94374914..94374922,- | |||
|coexpression_cluster_id=C1426 | |||
|description=CAGE_peak_7_at_GCLM_5end | |||
|id=chr1:94374914..94374922,- | |||
|ontology_enrichment_celltype=CL:0000548!1.91e-18!679;CL:0000004!1.91e-18!679;CL:0000255!1.91e-18!679;CL:0000012!4.20e-18!682;CL:0000144!3.59e-15!625;CL:0002371!1.37e-12!591;CL:0000003!8.02e-11!722;CL:0000055!1.02e-08!180;CL:0000063!1.09e-07!578;CL:0000048!2.51e-07!430;CL:0002057!3.26e-07!42;CL:0000222!4.99e-07!119;CL:0000860!5.13e-07!45;CL:0000034!5.33e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.65e-18;33!CL:0002057;4.65e-18;33!CL:0000473;2.77e-11;39!CL:0000234;2.77e-11;39!CL:0000499;3.77e-10;28!CL:0000327;3.93e-08;15!CL:0000153;8.90e-08;9!CL:0000447;8.90e-08;9!CL:0000576;1.42e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.36e-14,42;CL:0002057,2.36e-14,42;CL:0000473,1.32e-11,48;CL:0000234,1.32e-11,48;CL:0000499,2.82e-10,28;CL:0000048,6.34e-09,427;CL:0000839,8.49e-09,66;CL:0002194,9.43e-09,59;CL:0000576,9.43e-09,59;CL:0000040,9.43e-09,59;CL:0000559,9.43e-09,59;CL:0000723,1.88e-08,433;CL:0000327,2.40e-08,15;CL:0000034,3.01e-08,441;CL:0002009,3.06e-08,61;CL:0000153,5.80e-08,9;CL:0000447,5.80e-08,9;CL:0000557,6.53e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.42e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.34e-09!167;UBERON:0002049!5.72e-07!79;UBERON:0007798!5.72e-07!79;UBERON:0000926!6.76e-07!448;UBERON:0004120!6.76e-07!448;UBERON:0006603!6.76e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.43e-09,167;UBERON:0002371,1.97e-07,76;UBERON:0001434,2.77e-07,100;UBERON:0001474,4.83e-07,82;UBERON:0004765,5.73e-07,90;UBERON:0002405,8.42e-07,93 | |||
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| ||
|short_description=p7@GCLM | |||
}} | }} |
Latest revision as of 22:24, 19 September 2015
Short description: | p7@GCLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GCLM_5end |
Coexpression cluster: | C1426_CD14_bile_mucinous_lung_large_glioblastoma_nonsmall |
Association with transcript: | 43bp_to_ENST00000370238_5end |
EntrezGene: | GCLM |
HGNC: | 4312 |
UniProt: | P48507 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.36e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-14 | 42 |
defensive cell | 1.32e-11 | 48 |
phagocyte | 1.32e-11 | 48 |
stromal cell | 2.82e-10 | 28 |
multi fate stem cell | 6.34e-09 | 427 |
myeloid lineage restricted progenitor cell | 8.49e-09 | 66 |
monopoietic cell | 9.43e-09 | 59 |
monocyte | 9.43e-09 | 59 |
monoblast | 9.43e-09 | 59 |
promonocyte | 9.43e-09 | 59 |
somatic stem cell | 1.88e-08 | 433 |
extracellular matrix secreting cell | 2.40e-08 | 15 |
stem cell | 3.01e-08 | 441 |
macrophage dendritic cell progenitor | 3.06e-08 | 61 |
GAG secreting cell | 5.80e-08 | 9 |
carbohydrate secreting cell | 5.80e-08 | 9 |
granulocyte monocyte progenitor cell | 6.53e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 4.43e-09 | 167 |
bone marrow | 1.97e-07 | 76 |
skeletal system | 2.77e-07 | 100 |
bone element | 4.83e-07 | 82 |
skeletal element | 5.73e-07 | 90 |
immune system | 8.42e-07 | 93 |