FFCP PHASE1:Hg19::chr12:67663376..67663430,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:67663376..67663430,+
|short_description=p2@CAND1
|description=CAGE_peak_2_at_CAND1_5end
|association_with_transcript=-67bp_to_ENST00000539109_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55832 | |EntrezGene=55832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30688 | |HGNC=30688 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-67bp_to_ENST00000539109_5end | |||
|cluster_id=chr12:67663376..67663430,+ | |||
|description=CAGE_peak_2_at_CAND1_5end | |||
|id=chr12:67663376..67663430,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.19e-12!53;CL:0000051!1.19e-12!53;CL:0000838!1.31e-12!52;CL:0000791!5.09e-08!18;CL:0000789!5.09e-08!18;CL:0002420!5.09e-08!18;CL:0002419!5.09e-08!18;CL:0000790!5.09e-08!18;CL:0000084!6.55e-08!25;CL:0000827!6.55e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.08e-08;18!CL:0000789;4.08e-08;18!CL:0002419;4.08e-08;18!CL:0000084;4.13e-08;25!CL:0000542;9.58e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.19e-12,53;CL:0000051,1.19e-12,53;CL:0000838,1.31e-12,52;CL:0000791,5.09e-08,18;CL:0000789,5.09e-08,18;CL:0002420,5.09e-08,18;CL:0002419,5.09e-08,18;CL:0000790,5.09e-08,18;CL:0000084,6.55e-08,25;CL:0000827,6.55e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;4.08e-08;18!CL:0000051;9.58e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.34e-20!57;UBERON:0005068!9.34e-20!57;UBERON:0006241!9.34e-20!57;UBERON:0007135!9.34e-20!57;UBERON:0001017!4.12e-19!82;UBERON:0000955!7.43e-19!69;UBERON:0006238!7.43e-19!69;UBERON:0002616!1.01e-18!59;UBERON:0002780!4.50e-18!41;UBERON:0001890!4.50e-18!41;UBERON:0006240!4.50e-18!41;UBERON:0003080!1.64e-17!42;UBERON:0002020!2.31e-17!34;UBERON:0003528!2.31e-17!34;UBERON:0005743!2.39e-17!86;UBERON:0001869!1.01e-16!32;UBERON:0001893!3.63e-16!34;UBERON:0002791!1.32e-15!33;UBERON:0000073!1.45e-15!94;UBERON:0001016!1.45e-15!94;UBERON:0000956!4.59e-13!25;UBERON:0000203!4.59e-13!25;UBERON:0002619!2.07e-12!22;UBERON:0003075!2.89e-11!86;UBERON:0007284!2.89e-11!86;UBERON:0001950!3.54e-11!20;UBERON:0000153!1.39e-10!129;UBERON:0007811!1.39e-10!129;UBERON:0002346!1.56e-10!90;UBERON:0000033!9.66e-10!123;UBERON:0003056!3.78e-09!61;UBERON:0004121!5.12e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.65e-15;34!UBERON:0002020;3.65e-15;34!UBERON:0001869;3.88e-15;32!UBERON:0002791;9.02e-15;32!UBERON:0001893;5.43e-14;34!UBERON:0002780;3.24e-13;41!UBERON:0001890;3.24e-13;41!UBERON:0000956;3.78e-13;25!UBERON:0000203;3.78e-13;25!UBERON:0002619;2.02e-12;22!UBERON:0000073;3.09e-11;53!UBERON:0002616;3.09e-11;53!UBERON:0001950;3.45e-11;20!UBERON:0000955;4.73e-10;68!UBERON:0001017;1.97e-09;75!UBERON:0001016;1.49e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.08e-20,56;UBERON:0005068,3.08e-20,56;UBERON:0006241,3.08e-20,56;UBERON:0007135,3.08e-20,56;UBERON:0001017,1.87e-19,81;UBERON:0000955,3.03e-19,68;UBERON:0006238,3.03e-19,68;UBERON:0000073,7.77e-19,53;UBERON:0002616,7.77e-19,53;UBERON:0002780,4.50e-18,41;UBERON:0001890,4.50e-18,41;UBERON:0003080,4.50e-18,41;UBERON:0006240,4.50e-18,41;UBERON:0001016,2.29e-17,89;UBERON:0003528,2.31e-17,34;UBERON:0002020,2.31e-17,34;UBERON:0001869,1.01e-16,32;UBERON:0002791,3.06e-16,32;UBERON:0001893,3.63e-16,34;UBERON:0000956,4.59e-13,25;UBERON:0000203,4.59e-13,25;UBERON:0002619,2.07e-12,22;UBERON:0003075,2.04e-11,82;UBERON:0007284,2.04e-11,82;UBERON:0001950,3.54e-11,20;UBERON:0002346,1.19e-10,86;UBERON:0003056,9.93e-10,61;UBERON:0010371,6.72e-08,104;UBERON:0010314,2.97e-07,132 | |||
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| ||
|short_description=p2@CAND1 | |||
}} | }} |
Latest revision as of 01:21, 20 September 2015
Short description: | p2@CAND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAND1_5end |
Coexpression cluster: | NA |
Association with transcript: | -67bp_to_ENST00000539109_5end |
EntrezGene: | CAND1 |
HGNC: | 30688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.19e-12 | 53 |
common lymphoid progenitor | 1.19e-12 | 53 |
lymphoid lineage restricted progenitor cell | 1.31e-12 | 52 |
mature alpha-beta T cell | 5.09e-08 | 18 |
alpha-beta T cell | 5.09e-08 | 18 |
immature T cell | 5.09e-08 | 18 |
mature T cell | 5.09e-08 | 18 |
immature alpha-beta T cell | 5.09e-08 | 18 |
T cell | 6.55e-08 | 25 |
pro-T cell | 6.55e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
neural tube | 3.08e-20 | 56 |
neural rod | 3.08e-20 | 56 |
future spinal cord | 3.08e-20 | 56 |
neural keel | 3.08e-20 | 56 |
central nervous system | 1.87e-19 | 81 |
brain | 3.03e-19 | 68 |
future brain | 3.03e-19 | 68 |
regional part of nervous system | 7.77e-19 | 53 |
regional part of brain | 7.77e-19 | 53 |
regional part of forebrain | 4.50e-18 | 41 |
forebrain | 4.50e-18 | 41 |
anterior neural tube | 4.50e-18 | 41 |
future forebrain | 4.50e-18 | 41 |
nervous system | 2.29e-17 | 89 |
brain grey matter | 2.31e-17 | 34 |
gray matter | 2.31e-17 | 34 |
cerebral hemisphere | 1.01e-16 | 32 |
regional part of telencephalon | 3.06e-16 | 32 |
telencephalon | 3.63e-16 | 34 |
cerebral cortex | 4.59e-13 | 25 |
pallium | 4.59e-13 | 25 |
regional part of cerebral cortex | 2.07e-12 | 22 |
neural plate | 2.04e-11 | 82 |
presumptive neural plate | 2.04e-11 | 82 |
neocortex | 3.54e-11 | 20 |
neurectoderm | 1.19e-10 | 86 |
pre-chordal neural plate | 9.93e-10 | 61 |
ecto-epithelium | 6.72e-08 | 104 |
structure with developmental contribution from neural crest | 2.97e-07 | 132 |