FFCP PHASE1:Hg19::chr7:94054463..94054512,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:94054463..94054512,+ to FFCP PHASE1:Hg19::chr7:94054463..94054512,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1278 | |EntrezGene=1278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |HGNC=2198 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-69bp_to_ENST00000478215_5end | |||
|cluster_id=chr7:94054463..94054512,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_12_at_COL1A2_5end | |||
|id=chr7:94054463..94054512,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.68e-44!180;CL:0000057!9.74e-28!75;CL:0000680!3.92e-18!57;CL:0000056!3.92e-18!57;CL:0000355!3.92e-18!57;CL:0000183!2.57e-17!59;CL:0000187!2.85e-17!54;CL:0000048!1.45e-16!430;CL:0000723!1.75e-15!436;CL:0000034!1.11e-14!444;CL:0000393!2.35e-14!60;CL:0000211!2.35e-14!60;CL:0000192!3.44e-14!42;CL:0000514!3.44e-14!42;CL:0000359!2.62e-11!32;CL:0002620!5.40e-10!23;CL:0002371!1.61e-08!591;CL:0002334!3.60e-08!12;CL:0002494!1.70e-07!16;CL:0002320!2.23e-07!365;CL:0000499!6.24e-07!27;CL:0000327!9.61e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.04e-11;55!CL:0000723;3.54e-11;61!CL:0000048;1.73e-10;58!CL:0000057;5.46e-10;73!CL:0002334;2.89e-09;12!CL:0000499;4.90e-09;28!CL:0002320;5.54e-09;188!CL:0002620;8.96e-09;23!CL:0000187;9.82e-09;55!CL:0000359;1.14e-08;32!CL:0000034;1.31e-08;69!CL:0000192;4.60e-08;43!CL:0002570;6.77e-08;8!CL:0000327;9.75e-08;15!CL:0002494;1.40e-07;16!CL:0000393;3.76e-07;61!CL:0000211;3.76e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.88e-25,76;CL:0000048,2.93e-22,427;CL:0000723,2.67e-21,433;CL:0000034,4.56e-20,441;CL:0000680,8.72e-15,58;CL:0000056,8.72e-15,58;CL:0000355,8.72e-15,58;CL:0000187,2.20e-14,55;CL:0002320,2.76e-12,361;CL:0000393,7.52e-12,61;CL:0000211,7.52e-12,61;CL:0000192,1.07e-11,43;CL:0000514,1.07e-11,43;CL:0000134,3.17e-11,354;CL:0000499,2.84e-09,28;CL:0002334,4.50e-09,12;CL:0000359,5.17e-09,32;CL:0002620,8.07e-09,23;CL:0000219,2.37e-08,386;CL:0002570,5.22e-08,8;CL:0000327,7.14e-08,15;CL:0002494,1.64e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;4.60e-08;43!CL:0000355;2.10e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.14e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.73e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.66e-22!83;UBERON:0002329!7.66e-22!83;UBERON:0003077!7.66e-22!83;UBERON:0003059!7.66e-22!83;UBERON:0007282!7.66e-22!83;UBERON:0009618!7.66e-22!83;UBERON:0007285!7.66e-22!83;UBERON:0004290!6.44e-20!70;UBERON:0002385!1.90e-19!63;UBERON:0001015!1.90e-19!63;UBERON:0000383!1.90e-19!63;UBERON:0001134!4.21e-19!61;UBERON:0002036!4.21e-19!61;UBERON:0003082!4.21e-19!61;UBERON:0000486!9.43e-16!82;UBERON:0005256!1.56e-12!143;UBERON:0004872!2.13e-09!84;UBERON:0003102!4.54e-08!95;UBERON:0002384!5.30e-08!375;UBERON:0002100!5.42e-08!216;UBERON:0002049!8.16e-08!79;UBERON:0007798!8.16e-08!79;UBERON:0001637!8.18e-08!42;UBERON:0003509!8.18e-08!42;UBERON:0004572!8.18e-08!42;UBERON:0000475!8.22e-08!365;UBERON:0002199!9.00e-08!45;UBERON:0002416!9.00e-08!45;UBERON:0000948!9.56e-08!24;UBERON:0005498!9.56e-08!24;UBERON:0004140!9.56e-08!24;UBERON:0009881!9.56e-08!24;UBERON:0004141!9.56e-08!24;UBERON:0003084!9.56e-08!24;UBERON:0007005!9.56e-08!24;UBERON:0004139!9.56e-08!24;UBERON:0004291!9.56e-08!24;UBERON:0004535!1.26e-07!110;UBERON:0001013!1.43e-07!14;UBERON:0001009!2.61e-07!113;UBERON:0004573!5.22e-07!33;UBERON:0004571!5.22e-07!33;UBERON:0007100!9.44e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.97e-09;198!UBERON:0001013;1.04e-08;14!UBERON:0004457;2.79e-08;9!UBERON:0000042;2.79e-08;9!UBERON:0003688;6.15e-08;6!UBERON:0002358;6.15e-08;6!UBERON:0003684;6.15e-08;6!UBERON:0001178;6.15e-08;6!UBERON:0004573;9.96e-07;33!UBERON:0004571;9.96e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.80e-15,62;UBERON:0002036,1.80e-15,62;UBERON:0003082,1.80e-15,62;UBERON:0002385,1.94e-15,64;UBERON:0001015,1.94e-15,64;UBERON:0000383,1.94e-15,64;UBERON:0007524,5.76e-15,73;UBERON:0002329,1.33e-14,71;UBERON:0003059,1.33e-14,71;UBERON:0007282,1.33e-14,71;UBERON:0004290,1.33e-14,71;UBERON:0009618,1.33e-14,71;UBERON:0003077,3.29e-14,72;UBERON:0007285,3.29e-14,72;UBERON:0002384,7.21e-13,371;UBERON:0000486,2.70e-12,83;UBERON:0007503,4.25e-12,78;UBERON:0005256,2.96e-10,122;UBERON:0003104,8.80e-09,160;UBERON:0009142,8.80e-09,160;UBERON:0001013,1.00e-08,14;UBERON:0002199,1.12e-08,46;UBERON:0002416,1.12e-08,46;UBERON:0001637,4.13e-08,42;UBERON:0003509,4.13e-08,42;UBERON:0004572,4.13e-08,42;UBERON:0004872,6.35e-08,83;UBERON:0003688,6.62e-08,6;UBERON:0002358,6.62e-08,6;UBERON:0003684,6.62e-08,6;UBERON:0001178,6.62e-08,6;UBERON:0002097,1.88e-07,41;UBERON:0000926,2.75e-07,315;UBERON:0004120,2.75e-07,315;UBERON:0006603,2.75e-07,315;UBERON:0004573,3.36e-07,33;UBERON:0004571,3.36e-07,33;UBERON:0003102,7.24e-07,99 | |||
|phase1_expression=7.63049192936338,6.63711624062048,6.76581139660662,15.0109947529696,17.4314826826642,10.4680622892044,2.53299878168311,0.631719873426831,1.04474251279935,0,0,0.873765488520689,1.31883489114227,0.990130823680373,2.65117900582333,3.36162573225888,4.82155622419182,1.46062018077475,1.46379839637152,0.861847406537515,1.42800483870977,0.626909442956176,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,1.53435074212236,7.59022220007589,8.52274448081012,7.82171202388448,22.2680065174308,14.1124112387764,0.0945348171640679,0.443458794925128,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9273268406876,2.40597972162702,2.51577443545116,12.9076479336966,3.90135220418193,2.80338800071154,2.1349799145941,2.71334303258876,0.622422070799533,1.48181739276657,0.817309515567294,8.02194366518136,4.60940739583999,0.937285727335186,1.24864030732128,0,0.597794722207204,0.23486899728753,0.647491777472526,0.561803226808994,1.02077085627447,0.982674538494144,0.619954687054593,7.12801714369232,11.3742787468136,5.46096817162816,0.718618141816238,1.17835279767846,1.00094815897571,0.554128230968366,0.438977620880838,6.12975591598039,5.70904623845068,1.58805056424029,5.38168907066586,7.68806599746843,5.72216133130817,5.10154863343484,3.40073346486848,7.47157566132325,5.21127197728451,11.3080142601648,3.89748020644795,6.81571190459109,5.06274442532646,6.46584227275248,9.9402685904652,2.82105875037393,1.52604533079439,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,4.69348596989448,4.5026865673502,0,1.85747171212792,4.33127689001751,0,0,0,0,0,0,0,0,0,0,1.40241773803446,4.9388881359768,7.3504355692771,0,0,0,0,0,0.514703430895577,0,0,0,0,0.977424915930974,1.03993478527958,0,0.231860809950154,1.6437217193015,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0.308482478109971,0,0,0.784917590417525,1.74384027533312,0.4400297149257,0.904902010304444,14.3062578340753,2.535908257668,1.86156681609409,1.04007436911366,0.771622122786426,1.41849132023278,0.532844358032199,3.28849385413739,1.62786481617433,2.46972101034231,1.95441710576241,1.06617584622764,2.37585561880029,0.904318131178758,0,0.099972991182057,0,0,0,3.83399768786532,1.14861935834114,0,1.30303176000821,1.84928690295345,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.981531933753119,2.50085260529839,0.813795071099207,16.0137563378721,18.0213278685133,11.3545738824433,5.15422225967938,4.21324539618807,11.3703752027992,6.2083842775503,1.99267679560631,4.79359838208428,1.65078867489357,3.52442083432933,6.17658162859541,0,0,0,0,0,1.5119514666484,9.17998888929474,11.0492620767405,21.3301671769136,11.4043842837574,4.09365799253363,13.6725832972066,4.45254199334973,1.07946785661859,2.30830242907065,0.9033987161519,1.03850885836724,1.85936605535935,0,0,0,2.87036120411517,2.54927635209404,3.8026080338233,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,1.6068392984416,0.870036464629098,0.462145851343933,1.5350367472613,1.24052915236078,1.39646318328756,2.32026710262766,1.02271952899321,4.09547363974992,0,0,0,0,1.85938219718914,13.8517432605482,0,0.924100740528266,0,0.869932992075073,1.29726953372744,0.572499546967965,0.372158369359667,1.89827654831236,0.953150969619124,1.79128453917934,0.855877976067841,1.59101623962968,4.70969184119538,1.61885211824983,2.74537029736055,1.29593642580255,1.01091240786658,1.58510321173008,2.10629228119491,0,2.43713489631284,2.11300293513511,2.32049849393576,3.95935209470396,2.26016233240486,3.85955740482287,2.65375590096488,2.19225442626881,2.31510213706675,2.62357900818653,2.43492452355245,0.6196469961995,3.09865162785466,0.717056761020258,1.08073945114433,2.85336841185,0.354761064070598,3.79993743535795,6.58589785919804,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,1.18785872333055,1.53580351049616,0,0,0,0,0,0.597743964753209,0,0,0,0,11.5084647434869,0,0,0,0.394573622547734,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,1.27600463892768,1.09917112082235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,12.0386647094818,0,0,0,0,0,2.41981432097328,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0.859930162358083,0,0,0,0,0,4.29363407483012,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.407712618220842,0.313808538937,0.509991088181609,0.288950589901519,0,0,0,0.859530882839914,0,2.23425921017803,0.687481272035051,0,0.399358000997982,0,0,0.470284307407084,7.92659743793288,0,0,0,0,0,0,0,0,0,0.13753943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| ||
|short_description=p12@COL1A2 | |||
}} | }} |
Latest revision as of 02:52, 20 September 2015
Short description: | p12@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -69bp_to_ENST00000478215_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.88e-25 | 76 |
multi fate stem cell | 2.93e-22 | 427 |
somatic stem cell | 2.67e-21 | 433 |
stem cell | 4.56e-20 | 441 |
muscle precursor cell | 8.72e-15 | 58 |
myoblast | 8.72e-15 | 58 |
multi-potent skeletal muscle stem cell | 8.72e-15 | 58 |
muscle cell | 2.20e-14 | 55 |
connective tissue cell | 2.76e-12 | 361 |
electrically responsive cell | 7.52e-12 | 61 |
electrically active cell | 7.52e-12 | 61 |
smooth muscle cell | 1.07e-11 | 43 |
smooth muscle myoblast | 1.07e-11 | 43 |
mesenchymal cell | 3.17e-11 | 354 |
stromal cell | 2.84e-09 | 28 |
preadipocyte | 4.50e-09 | 12 |
vascular associated smooth muscle cell | 5.17e-09 | 32 |
skin fibroblast | 8.07e-09 | 23 |
motile cell | 2.37e-08 | 386 |
mesenchymal stem cell of adipose | 5.22e-08 | 8 |
extracellular matrix secreting cell | 7.14e-08 | 15 |
cardiocyte | 1.64e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.73e-07 | 14 |