FFCP PHASE1:Hg19::chr7:94056489..94056511,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:94056489..94056511,+ to FFCP PHASE1:Hg19::chr7:94056489..94056511,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1278 | |EntrezGene=1278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |HGNC=2198 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-112bp_to_ENST00000464916_5end | |||
|cluster_id=chr7:94056489..94056511,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_16_at_COL1A2_5end | |||
|id=chr7:94056489..94056511,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.31e-44!180;CL:0000057!1.21e-25!75;CL:0000680!2.06e-21!57;CL:0000056!2.06e-21!57;CL:0000355!2.06e-21!57;CL:0000187!3.12e-20!54;CL:0000183!2.27e-19!59;CL:0000393!4.20e-17!60;CL:0000211!4.20e-17!60;CL:0000192!7.05e-16!42;CL:0000514!7.05e-16!42;CL:0000048!2.03e-15!430;CL:0000723!1.92e-14!436;CL:0000034!8.20e-14!444;CL:0000359!8.79e-13!32;CL:0002334!1.27e-09!12;CL:0002620!1.86e-09!23;CL:0000499!1.56e-07!27;CL:0002371!1.58e-07!591;CL:0000327!3.79e-07!14;CL:0002494!6.96e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.47e-11;12!CL:0000359;1.33e-10;32!CL:0000499;1.74e-10;28!CL:0000327;1.22e-08;15!CL:0002620;1.24e-08;23!CL:0000192;1.35e-08;43!CL:0000057;1.50e-08;73!CL:0002320;2.87e-08;188!CL:0000153;3.97e-07;9!CL:0000447;3.97e-07;9!CL:0002539;5.06e-07;10!CL:0000187;6.41e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.79e-23,76;CL:0000048,5.96e-19,427;CL:0000723,3.76e-18,433;CL:0000034,4.00e-17,441;CL:0000680,7.20e-13,58;CL:0000056,7.20e-13,58;CL:0000355,7.20e-13,58;CL:0000187,3.86e-12,55;CL:0000192,5.29e-12,43;CL:0000514,5.29e-12,43;CL:0002334,1.35e-11,12;CL:0000359,1.11e-10,32;CL:0002320,1.28e-10,361;CL:0000499,1.33e-10,28;CL:0000393,4.79e-10,61;CL:0000211,4.79e-10,61;CL:0000134,1.37e-09,354;CL:0002620,9.49e-09,23;CL:0000327,9.92e-09,15;CL:0002539,3.37e-07,10;CL:0000153,4.56e-07,9;CL:0000447,4.56e-07,9;CL:0000219,5.84e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;1.35e-08;43!CL:0000355;4.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.28e-23!83;UBERON:0002329!1.28e-23!83;UBERON:0003077!1.28e-23!83;UBERON:0003059!1.28e-23!83;UBERON:0007282!1.28e-23!83;UBERON:0009618!1.28e-23!83;UBERON:0007285!1.28e-23!83;UBERON:0004290!1.06e-22!70;UBERON:0001134!1.94e-21!61;UBERON:0002036!1.94e-21!61;UBERON:0003082!1.94e-21!61;UBERON:0002385!4.61e-21!63;UBERON:0001015!4.61e-21!63;UBERON:0000383!4.61e-21!63;UBERON:0000486!2.05e-18!82;UBERON:0005256!2.42e-12!143;UBERON:0004872!1.36e-10!84;UBERON:0001637!7.72e-10!42;UBERON:0003509!7.72e-10!42;UBERON:0004572!7.72e-10!42;UBERON:0002100!4.59e-09!216;UBERON:0002199!5.01e-09!45;UBERON:0002416!5.01e-09!45;UBERON:0004573!5.12e-09!33;UBERON:0004571!5.12e-09!33;UBERON:0003102!3.67e-08!95;UBERON:0000490!6.00e-08!138;UBERON:0000475!6.25e-08!365;UBERON:0002097!8.64e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.77e-09;9!UBERON:0000042;2.77e-09;9!UBERON:0003688;1.70e-08;6!UBERON:0002358;1.70e-08;6!UBERON:0003684;1.70e-08;6!UBERON:0001178;1.70e-08;6!UBERON:0002384;1.79e-08;198!UBERON:0004573;2.45e-08;33!UBERON:0004571;2.45e-08;33!UBERON:0002385;2.31e-07;31!UBERON:0001015;2.31e-07;31!UBERON:0000383;2.31e-07;31!UBERON:0002097;4.42e-07;41!UBERON:0004237;5.06e-07;10!UBERON:0004695;5.06e-07;10!UBERON:0002111;5.06e-07;10!UBERON:0004178;5.06e-07;10!UBERON:0002199;6.75e-07;46!UBERON:0002416;6.75e-07;46!UBERON:0001637;7.58e-07;42!UBERON:0003509;7.58e-07;42!UBERON:0004572;7.58e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.10e-14,73;UBERON:0001134,1.37e-13,62;UBERON:0002036,1.37e-13,62;UBERON:0003082,1.37e-13,62;UBERON:0002329,1.96e-13,71;UBERON:0003059,1.96e-13,71;UBERON:0007282,1.96e-13,71;UBERON:0004290,1.96e-13,71;UBERON:0009618,1.96e-13,71;UBERON:0003077,4.35e-13,72;UBERON:0007285,4.35e-13,72;UBERON:0002385,7.86e-13,64;UBERON:0001015,7.86e-13,64;UBERON:0000383,7.86e-13,64;UBERON:0000486,1.12e-11,83;UBERON:0007503,3.24e-11,78;UBERON:0002384,5.22e-11,371;UBERON:0001637,1.03e-10,42;UBERON:0003509,1.03e-10,42;UBERON:0004572,1.03e-10,42;UBERON:0002199,5.29e-10,46;UBERON:0002416,5.29e-10,46;UBERON:0005256,4.66e-09,122;UBERON:0004573,6.00e-09,33;UBERON:0004571,6.00e-09,33;UBERON:0002097,6.12e-09,41;UBERON:0003688,1.65e-08,6;UBERON:0002358,1.65e-08,6;UBERON:0003684,1.65e-08,6;UBERON:0001178,1.65e-08,6;UBERON:0004872,2.57e-08,83;UBERON:0003104,3.46e-08,160;UBERON:0009142,3.46e-08,160;UBERON:0003102,3.27e-07,99;UBERON:0004237,3.37e-07,10;UBERON:0004695,3.37e-07,10;UBERON:0002111,3.37e-07,10;UBERON:0004178,3.37e-07,10;UBERON:0007500,7.57e-07,59;UBERON:0001981,7.57e-07,59;UBERON:0004537,7.57e-07,59;UBERON:0006965,7.57e-07,59 | |||
|phase1_expression=5.26867299884614,8.13581990785736,3.94672331468719,8.00586386825043,8.04529969969118,4.36169262050184,2.53299878168311,0,0.783556884599516,0.245733936501509,0,0,1.05506791291381,0.618831764800233,0.331397375727916,1.34465029290355,1.80808358407193,1.46062018077475,2.43966399395253,0.492484232307152,0.816002764977012,0.626909442956176,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,0.670700859703636,0.895037932904712,6.14446559053763,2.00535164254356,7.53201898596283,27.0397221997374,8.75942766544745,0.283604451492204,0.443458794925128,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.15271869829786,1.85372853138506,7.45775213946916,2.4826786753885,1.12135520028461,2.1349799145941,2.96001058100592,0,0.67355336034844,0.980771418680752,3.48122083583342,5.76175924479999,0.468642863667593,0.312160076830321,0,0.149448680551801,0,0.323745888736263,0.421352420106746,0.408308342509787,0.737005903870608,0.413303124703062,2.37600571456411,9.64341024186372,0.910161361938026,0,0.336672227908132,0.125118519871964,0.277064115484183,1.75591048352335,2.75839016219118,2.55404700141215,1.36118619792025,3.04962380671065,4.05759038755278,3.39091041855299,4.20127534518163,1.8549455262919,6.44101350114073,4.46680455195816,4.89451363499672,3.02054715999716,2.77677151668526,4.41839513483037,4.20279747728911,3.90510551768276,1.5112814734146,1.3564847384839,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,4.69348596989448,10.2918550110862,1.38134921352481,1.85747171212792,4.33127689001751,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.6462960453256,4.41026134156626,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,1.74384027533312,0.7333828582095,2.45616259939778,0,1.690605505112,1.06375246633948,1.04007436911366,0,0,0.266422179016099,2.14466990487221,4.88359444852299,0.823240336780769,0.65147236858747,1.42156779497018,1.58390374586686,0.602878754119172,0.871533458600294,0,0,0,0,0.958499421966331,4.59447743336456,1.42636905040718,2.02693829334611,1.43833425785268,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,2.50085260529839,0.542530047399471,10.3985430765404,26.7643483195743,7.41201350659493,2.92853537481783,2.10662269809403,2.27407504055985,2.0694614258501,1.32845119707087,1.84369168541703,1.30325421702124,1.37060810223918,5.83343820478455,0,0,0,0,1.66435439510497,2.41912234663744,6.20269519546942,3.99001130548962,11.7877239661891,5.12556597022804,3.58195074346692,8.5252578206112,7.42090332224955,2.46735510084249,1.77561725313127,0.410635780069046,4.15403543346897,1.74315567689939,0,0,0,2.18147451512753,1.63882051206045,2.88473712910733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,6.42735719376638,0.290012154876366,0.308097234229289,0.614014698904518,0.827019434907183,1.50388342815583,1.30515024522806,0.426133137080504,2.49289699810865,0,0,0,0,2.32422774648643,8.18512101759664,1.3940745403212,1.23213432070436,0,1.73986598415015,0.9266210955196,0.715624433709956,0.372158369359667,0.949138274156178,1.14378116354295,1.27948895655667,0.42793898803392,1.27281299170375,1.56989728039846,1.79872457583315,2.47083326762449,0.942499218765491,0.202182481573316,1.58510321173008,1.68503382495592,0,2.43713489631284,1.05650146756755,1.09199929126389,3.11091950298168,1.13008116620243,3.30819206127675,3.3171948762061,0.876901770507525,0.578775534266688,2.62357900818653,1.01455188481352,1.239293992399,2.25356482025793,0,0.785992328104969,1.426684205925,0.354761064070598,4.64436797654861,5.26871828735843,0,1.04980416073495,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0.307160702099232,0,0.140669416410513,0,0,0,0.796991953004279,0,0,0,0,4.0435146396035,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,1.07730361905316,0,0,0,0,1.27600463892768,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,0.611030144933625,0,0,0,0,6.42062117839031,0,0,0,0,0.789168805698781,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0.171986032471617,0,0,0,0,0,7.45736444575757,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0.136905378891993,0,0.859530882839914,0,1.11712960508902,0,0,0.399358000997982,0,0,0.470284307407084,6.12509802022086,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.0788057072991982,0.209818352539992,0,0,0,0.714695326373367,0,0.5085370753095,3.25799761052228,1.72844298240254,4.24563568142232,0,0,3.40776043570843,0,0,0,0,0,0,0,0.427149650270779,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.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| ||
|short_description=p16@COL1A2 | |||
}} | }} |
Latest revision as of 02:55, 20 September 2015
Short description: | p16@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -112bp_to_ENST00000464916_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.79e-23 | 76 |
multi fate stem cell | 5.96e-19 | 427 |
somatic stem cell | 3.76e-18 | 433 |
stem cell | 4.00e-17 | 441 |
muscle precursor cell | 7.20e-13 | 58 |
myoblast | 7.20e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.20e-13 | 58 |
muscle cell | 3.86e-12 | 55 |
smooth muscle cell | 5.29e-12 | 43 |
smooth muscle myoblast | 5.29e-12 | 43 |
preadipocyte | 1.35e-11 | 12 |
vascular associated smooth muscle cell | 1.11e-10 | 32 |
connective tissue cell | 1.28e-10 | 361 |
stromal cell | 1.33e-10 | 28 |
electrically responsive cell | 4.79e-10 | 61 |
electrically active cell | 4.79e-10 | 61 |
mesenchymal cell | 1.37e-09 | 354 |
skin fibroblast | 9.49e-09 | 23 |
extracellular matrix secreting cell | 9.92e-09 | 15 |
aortic smooth muscle cell | 3.37e-07 | 10 |
GAG secreting cell | 4.56e-07 | 9 |
carbohydrate secreting cell | 4.56e-07 | 9 |
motile cell | 5.84e-07 | 386 |