FFCP PHASE1:Hg19::chr7:102553470..102553487,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10234 | |EntrezGene=10234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16895 | |HGNC=16895 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000249377_5end | |association_with_transcript=18bp_to_ENST00000249377_5end | ||
|cluster_id=chr7:102553470..102553487,+ | |||
|coexpression_cluster_id=C4637 | |||
|description=CAGE_peak_2_at_LRRC17_5end | |description=CAGE_peak_2_at_LRRC17_5end | ||
|id=chr7:102553470..102553487,+ | |id=chr7:102553470..102553487,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.95e-39!180;CL:0000680!4.17e-32!57;CL:0000056!4.17e-32!57;CL:0000355!4.17e-32!57;CL:0000183!1.19e-30!59;CL:0000187!3.29e-30!54;CL:0000393!3.35e-27!60;CL:0000211!3.35e-27!60;CL:0000192!4.84e-24!42;CL:0000514!4.84e-24!42;CL:0000359!3.06e-19!32;CL:0000222!9.11e-17!119;CL:0002494!7.54e-11!16;CL:0000057!5.93e-09!75;CL:0000220!9.08e-09!246;CL:0002321!2.12e-08!248;CL:0002539!4.40e-08!10;CL:0002371!1.62e-07!591;CL:0000243!7.06e-07!15;CL:0000125!7.06e-07!15;CL:0000030!7.06e-07!15;CL:0000339!7.06e-07!15;CL:0000048!8.67e-07!430 | |ontology_enrichment_celltype=CL:0000055!8.95e-39!180;CL:0000680!4.17e-32!57;CL:0000056!4.17e-32!57;CL:0000355!4.17e-32!57;CL:0000183!1.19e-30!59;CL:0000187!3.29e-30!54;CL:0000393!3.35e-27!60;CL:0000211!3.35e-27!60;CL:0000192!4.84e-24!42;CL:0000514!4.84e-24!42;CL:0000359!3.06e-19!32;CL:0000222!9.11e-17!119;CL:0002494!7.54e-11!16;CL:0000057!5.93e-09!75;CL:0000220!9.08e-09!246;CL:0002321!2.12e-08!248;CL:0002539!4.40e-08!10;CL:0002371!1.62e-07!591;CL:0000243!7.06e-07!15;CL:0000125!7.06e-07!15;CL:0000030!7.06e-07!15;CL:0000339!7.06e-07!15;CL:0000048!8.67e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.66e-22;32!CL:0000192;1.45e-21;43!CL:0000187;1.62e-20;55!CL:0000393;2.65e-17;61!CL:0000211;2.65e-17;61!CL:0002494;6.07e-13;16!CL:0002539;1.41e-09;10!CL:0000048;5.56e-09;58!CL:0000723;7.49e-09;61!CL:0000134;8.84e-09;55!CL:0000243;2.58e-07;15!CL:0000125;2.58e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,7.49e-40,58;CL:0000056,7.49e-40,58;CL:0000355,7.49e-40,58;CL:0000187,1.64e-37,55;CL:0000393,1.40e-33,61;CL:0000211,1.40e-33,61;CL:0000192,6.56e-30,43;CL:0000514,6.56e-30,43;CL:0000359,2.93e-23,32;CL:0000222,2.33e-16,121;CL:0002494,5.90e-13,16;CL:0000048,7.64e-12,427;CL:0000723,5.00e-11,433;CL:0000034,5.36e-10,441;CL:0002539,1.45e-09,10;CL:0002321,2.81e-08,250;CL:0000243,2.65e-07,15;CL:0000125,2.65e-07,15;CL:0000030,2.65e-07,15;CL:0000339,2.65e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;1.45e-21;43!CL:0000355;1.48e-20;58!CL:0000339;2.58e-07;15 | |||
|ontology_enrichment_disease=DOID:2394!6.27e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.32e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.33e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0001134!2.81e-30!61;UBERON:0002036!2.81e-30!61;UBERON:0003082!2.81e-30!61;UBERON:0002385!3.80e-30!63;UBERON:0001015!3.80e-30!63;UBERON:0000383!3.80e-30!63;UBERON:0000914!9.71e-29!83;UBERON:0002329!9.71e-29!83;UBERON:0003077!9.71e-29!83;UBERON:0003059!9.71e-29!83;UBERON:0007282!9.71e-29!83;UBERON:0009618!9.71e-29!83;UBERON:0007285!9.71e-29!83;UBERON:0004290!1.54e-28!70;UBERON:0004872!1.11e-23!84;UBERON:0000486!4.21e-23!82;UBERON:0005256!1.49e-21!143;UBERON:0002049!4.11e-20!79;UBERON:0007798!4.11e-20!79;UBERON:0004535!1.58e-18!110;UBERON:0003914!5.85e-18!118;UBERON:0001009!5.90e-18!113;UBERON:0001637!7.08e-18!42;UBERON:0003509!7.08e-18!42;UBERON:0004572!7.08e-18!42;UBERON:0004573!2.81e-17!33;UBERON:0004571!2.81e-17!33;UBERON:0000490!4.20e-17!138;UBERON:0001981!1.98e-16!60;UBERON:0007500!1.98e-16!60;UBERON:0004537!1.98e-16!60;UBERON:0006965!1.98e-16!60;UBERON:0000055!5.43e-15!69;UBERON:0000119!1.36e-13!312;UBERON:0000483!1.29e-12!309;UBERON:0002100!9.09e-12!216;UBERON:0000481!1.01e-11!347;UBERON:0000475!2.76e-11!365;UBERON:0000468!5.91e-11!659;UBERON:0000948!8.52e-11!24;UBERON:0005498!8.52e-11!24;UBERON:0004140!8.52e-11!24;UBERON:0009881!8.52e-11!24;UBERON:0004141!8.52e-11!24;UBERON:0003084!8.52e-11!24;UBERON:0007005!8.52e-11!24;UBERON:0004139!8.52e-11!24;UBERON:0004291!8.52e-11!24;UBERON:0000947!6.53e-10!21;UBERON:0010191!6.53e-10!21;UBERON:0007100!1.50e-09!27;UBERON:0000922!1.55e-09!612;UBERON:0001135!1.58e-09!15;UBERON:0000477!2.01e-09!286;UBERON:0002050!2.14e-09!605;UBERON:0005423!2.14e-09!605;UBERON:0000467!3.01e-09!625;UBERON:0000923!4.06e-09!604;UBERON:0005291!4.06e-09!604;UBERON:0006598!4.06e-09!604;UBERON:0002532!4.06e-09!604;UBERON:0000480!4.30e-09!626;UBERON:0000926!1.78e-08!448;UBERON:0004120!1.78e-08!448;UBERON:0006603!1.78e-08!448;UBERON:0003104!1.92e-08!238;UBERON:0009142!1.92e-08!238;UBERON:0004111!2.32e-08!241;UBERON:0004237!4.40e-08!10;UBERON:0004695!4.40e-08!10;UBERON:0002111!4.40e-08!10;UBERON:0004178!4.40e-08!10;UBERON:0000025!5.32e-08!194;UBERON:0000479!9.20e-08!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;9.38e-16;31!UBERON:0001015;9.38e-16;31!UBERON:0000383;9.38e-16;31!UBERON:0004573;6.86e-15;33!UBERON:0004571;6.86e-15;33!UBERON:0000948;4.12e-12;22!UBERON:0001637;7.50e-12;42!UBERON:0003509;7.50e-12;42!UBERON:0004572;7.50e-12;42!UBERON:0001135;1.49e-10;15!UBERON:0007100;9.53e-10;25!UBERON:0004237;1.41e-09;10!UBERON:0004695;1.41e-09;10!UBERON:0002111;1.41e-09;10!UBERON:0004178;1.41e-09;10!UBERON:0002049;1.63e-08;75!UBERON:0007798;1.63e-08;75!UBERON:0000947;3.07e-08;21!UBERON:0010191;3.07e-08;21!UBERON:0007500;4.59e-08;56!UBERON:0001981;4.59e-08;56!UBERON:0004537;4.59e-08;56!UBERON:0006876;2.00e-07;11!UBERON:0001134;2.02e-07;16!UBERON:0002036;2.02e-07;16 | |||
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| ||
|short_description=p2@LRRC17 | |short_description=p2@LRRC17 | ||
}} | }} |
Latest revision as of 19:15, 24 September 2015
Short description: | p2@LRRC17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC17_5end |
Coexpression cluster: | C4637_Smooth_leiomyoma_mesenchymal_Iris_glioblastoma_Lens_Ciliary |
Association with transcript: | 18bp_to_ENST00000249377_5end |
EntrezGene: | LRRC17 |
HGNC: | 16895 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 7.49e-40 | 58 |
myoblast | 7.49e-40 | 58 |
multi-potent skeletal muscle stem cell | 7.49e-40 | 58 |
muscle cell | 1.64e-37 | 55 |
electrically responsive cell | 1.40e-33 | 61 |
electrically active cell | 1.40e-33 | 61 |
smooth muscle cell | 6.56e-30 | 43 |
smooth muscle myoblast | 6.56e-30 | 43 |
vascular associated smooth muscle cell | 2.93e-23 | 32 |
mesodermal cell | 2.33e-16 | 121 |
cardiocyte | 5.90e-13 | 16 |
multi fate stem cell | 7.64e-12 | 427 |
somatic stem cell | 5.00e-11 | 433 |
stem cell | 5.36e-10 | 441 |
aortic smooth muscle cell | 1.45e-09 | 10 |
embryonic cell | 2.81e-08 | 250 |
glial cell (sensu Vertebrata) | 2.65e-07 | 15 |
glial cell | 2.65e-07 | 15 |
glioblast | 2.65e-07 | 15 |
glioblast (sensu Vertebrata) | 2.65e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.33e-09 | 14 |