FFCP PHASE1:Hg19::chr19:7812475..7812509,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:7812475..7812509,-
|short_description=p1@CD209
|description=CAGE_peak_1_at_CD209_5end
|association_with_transcript=-11bp_to_ENST00000204801,ENST0000030135...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=30835 | |EntrezGene=30835 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1641 | |HGNC=1641 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NNX6,G5E9C4,F5H0Y7,B2R907,B4E2A8 | |UniProt=Q9NNX6,G5E9C4,F5H0Y7,B2R907,B4E2A8 | ||
|association_with_transcript=-11bp_to_ENST00000204801,ENST00000301357,ENST00000315591,ENST00000315599,ENST00000354397,ENST00000394161,ENST00000394173,ENST00000540789,NM_001144893,NM_001144894,NM_001144895,NM_001144896,NM_001144897,NM_001144899,NM_021155,NR_026692,uc002mhq.2,uc002mhr. | |||
|cluster_id=chr19:7812475..7812509,- | |||
|coexpression_cluster_id=C1560 | |||
|description=CAGE_peak_1_at_CD209_5end | |||
|id=chr19:7812475..7812509,- | |||
|ontology_enrichment_celltype=CL:0002194!5.69e-32!63;CL:0000576!5.69e-32!63;CL:0000040!5.69e-32!63;CL:0000559!5.69e-32!63;CL:0002009!1.51e-30!65;CL:0000839!2.36e-27!70;CL:0000766!8.65e-27!76;CL:0000557!9.04e-27!71;CL:0002057!2.10e-18!42;CL:0000860!1.36e-16!45;CL:0000763!1.11e-14!112;CL:0000049!1.11e-14!112;CL:0002087!1.62e-13!119;CL:0000738!1.66e-11!140;CL:0002031!2.12e-10!124;CL:0000037!1.43e-07!172;CL:0000566!1.43e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000235;1.37e-27;6!CL:0002619;4.04e-15;3!CL:0000840;9.23e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.51e-27,6;CL:0002194,3.37e-18,59;CL:0000576,3.37e-18,59;CL:0000040,3.37e-18,59;CL:0000559,3.37e-18,59;CL:0002009,1.76e-17,61;CL:0000839,7.10e-16,66;CL:0000557,1.39e-15,67;CL:0002619,4.06e-15,3;CL:0000766,3.06e-14,72;CL:0000763,2.09e-09,108;CL:0000049,2.09e-09,108;CL:0000840,9.25e-08,5;CL:0001029,9.25e-08,5;CL:0002087,1.54e-07,115;CL:0002031,4.47e-07,120 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.89e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.12e-36!115;UBERON:0002390!1.48e-23!102;UBERON:0003061!1.48e-23!102;UBERON:0002371!3.41e-22!80;UBERON:0002193!3.50e-22!112;UBERON:0001474!1.07e-19!86;UBERON:0002405!1.22e-18!115;UBERON:0004765!1.21e-15!101;UBERON:0001434!1.21e-15!101;UBERON:0003081!1.70e-11!216;UBERON:0000062!9.68e-11!511;UBERON:0000468!2.15e-09!659;UBERON:0002204!4.55e-09!167;UBERON:0000467!1.10e-08!625;UBERON:0000480!1.29e-08!626;UBERON:0000922!1.79e-08!612;UBERON:0002050!1.05e-07!605;UBERON:0005423!1.05e-07!605;UBERON:0000923!2.34e-07!604;UBERON:0005291!2.34e-07!604;UBERON:0006598!2.34e-07!604;UBERON:0002532!2.34e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.70e-13,76;UBERON:0007023,5.37e-13,114;UBERON:0001474,4.76e-12,82;UBERON:0002405,1.31e-11,93;UBERON:0004765,1.20e-10,90;UBERON:0003081,8.57e-10,203;UBERON:0002390,1.78e-09,98;UBERON:0003061,1.78e-09,98;UBERON:0002193,1.90e-09,108;UBERON:0001434,3.26e-09,100;UBERON:0000926,2.69e-07,315;UBERON:0004120,2.69e-07,315;UBERON:0006603,2.69e-07,315 | |||
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| ||
|short_description=p1@CD209 | |||
}} | }} |
Latest revision as of 21:58, 24 September 2015
Short description: | p1@CD209 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD209_5end |
Coexpression cluster: | C1560_CD14_Dendritic_Macrophage_dura_Monocytederived_lymph_left |
Association with transcript: | -11bp_to_ENST00000204801, ENST00000301357, ENST00000315591, ENST00000315599, ENST00000354397, ENST00000394161, ENST00000394173, ENST00000540789, NM_001144893, NM_001144894, NM_001144895, NM_001144896, NM_001144897, NM_001144899, NM_021155, NR_026692, uc002mhq.2, uc002mhr. |
EntrezGene: | CD209 |
HGNC: | 1641 |
UniProt: | Q9NNX6G5E9C4F5H0Y7B2R907B4E2A8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.51e-27 | 6 |
monopoietic cell | 3.37e-18 | 59 |
monocyte | 3.37e-18 | 59 |
monoblast | 3.37e-18 | 59 |
promonocyte | 3.37e-18 | 59 |
macrophage dendritic cell progenitor | 1.76e-17 | 61 |
myeloid lineage restricted progenitor cell | 7.10e-16 | 66 |
granulocyte monocyte progenitor cell | 1.39e-15 | 67 |
adult endothelial progenitor cell | 4.06e-15 | 3 |
myeloid leukocyte | 3.06e-14 | 72 |
myeloid cell | 2.09e-09 | 108 |
common myeloid progenitor | 2.09e-09 | 108 |
immature conventional dendritic cell | 9.25e-08 | 5 |
common dendritic progenitor | 9.25e-08 | 5 |
nongranular leukocyte | 1.54e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 4.47e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.70e-13 | 76 |
adult organism | 5.37e-13 | 114 |
bone element | 4.76e-12 | 82 |
immune system | 1.31e-11 | 93 |
skeletal element | 1.20e-10 | 90 |
lateral plate mesoderm | 8.57e-10 | 203 |
hematopoietic system | 1.78e-09 | 98 |
blood island | 1.78e-09 | 98 |
hemolymphoid system | 1.90e-09 | 108 |
skeletal system | 3.26e-09 | 100 |
mesoderm | 2.69e-07 | 315 |
mesoderm-derived structure | 2.69e-07 | 315 |
presumptive mesoderm | 2.69e-07 | 315 |