FFCP PHASE1:Hg19::chr6:135502408..135502459,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=4602 | |EntrezGene=4602 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=7545 | |HGNC=7545 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q708E1,F8W8G5,Q708E3,Q708E6,P10242,E9PNL6,E9PRS2,E9PNA4,E9PLZ5,E9PI07,Q14025,Q708E9 | |UniProt=Q708E1,F8W8G5,Q708E3,Q708E6,P10242,E9PNL6,E9PRS2,E9PNA4,E9PLZ5,E9PI07,Q14025,Q708E9 | ||
|association_with_transcript=0bp_to_ENST00000237302,ENST00000316528,ENST00000339290,ENST00000341911,ENST00000367812,ENST00000442647,ENST00000463282,ENST00000525477,ENST00000533837,NM_001130172,NM_001130173,NM_001161656,NM_001161657,NM_001161658,NM_001161659,NM_001161660,NM_005375,uc003qfb.1,uc003qfc.2,uc003qfd.2,uc003qfe.2,uc003qff.2,uc003qfg.2,uc003qfh.2,uc003qfi.2,uc003qfj.2,uc003qfk.2,uc003qfl.2,uc003qfm.2,uc003qfn.2,uc003qfo.2,uc003qfp.2,uc003qfq.2,uc003qfr.2,uc003qfs.2,uc003qft.2,uc003qfu.2,uc003qfv.2,uc003qfw.2,uc003qfx.2,uc003qfy.2,uc003qfz.2,uc003qga.2,uc003qgb.2,uc010kgi.2,uc010kgj.2,uc010kgk.2_5end | |association_with_transcript=0bp_to_ENST00000237302,ENST00000316528,ENST00000339290,ENST00000341911,ENST00000367812,ENST00000442647,ENST00000463282,ENST00000525477,ENST00000533837,NM_001130172,NM_001130173,NM_001161656,NM_001161657,NM_001161658,NM_001161659,NM_001161660,NM_005375,uc003qfb.1,uc003qfc.2,uc003qfd.2,uc003qfe.2,uc003qff.2,uc003qfg.2,uc003qfh.2,uc003qfi.2,uc003qfj.2,uc003qfk.2,uc003qfl.2,uc003qfm.2,uc003qfn.2,uc003qfo.2,uc003qfp.2,uc003qfq.2,uc003qfr.2,uc003qfs.2,uc003qft.2,uc003qfu.2,uc003qfv.2,uc003qfw.2,uc003qfx.2,uc003qfy.2,uc003qfz.2,uc003qga.2,uc003qgb.2,uc010kgi.2,uc010kgj.2,uc010kgk.2_5end | ||
|cluster_id=chr6:135502408..135502459,+ | |||
|coexpression_cluster_id=C4563 | |coexpression_cluster_id=C4563 | ||
|description=CAGE_peak_2_at_MYB_5end | |description=CAGE_peak_2_at_MYB_5end | ||
Latest revision as of 22:59, 24 September 2015
| Short description: | p2@MYB |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_MYB_5end |
| Coexpression cluster: | C4563_non_Mast_chronic_acute_granulocyte_myelodysplastic_CD34 |
| Association with transcript: | 0bp_to_ENST00000237302, ENST00000316528, ENST00000339290, ENST00000341911, ENST00000367812, ENST00000442647, ENST00000463282, ENST00000525477, ENST00000533837, NM_001130172, NM_001130173, NM_001161656, NM_001161657, NM_001161658, NM_001161659, NM_001161660, NM_005375, uc003qfb.1, uc003qfc.2, uc003qfd.2, uc003qfe.2, uc003qff.2, uc003qfg.2, uc003qfh.2, uc003qfi.2, uc003qfj.2, uc003qfk.2, uc003qfl.2, uc003qfm.2, uc003qfn.2, uc003qfo.2, uc003qfp.2, uc003qfq.2, uc003qfr.2, uc003qfs.2, uc003qft.2, uc003qfu.2, uc003qfv.2, uc003qfw.2, uc003qfx.2, uc003qfy.2, uc003qfz.2, uc003qga.2, uc003qgb.2, uc010kgi.2, uc010kgj.2, uc010kgk.2_5end |
| EntrezGene: | MYB |
| HGNC: | 7545 |
| UniProt: | Q708E1F8W8G5Q708E3Q708E6P10242E9PNL6E9PRS2E9PNA4E9PLZ5E9PI07Q14025Q708E9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic cell | 4.37e-21 | 177 |
| hematopoietic stem cell | 1.30e-20 | 168 |
| hematopoietic oligopotent progenitor cell | 1.04e-18 | 161 |
| hematopoietic multipotent progenitor cell | 1.04e-18 | 161 |
| lymphocyte | 8.39e-11 | 53 |
| common lymphoid progenitor | 8.39e-11 | 53 |
| lymphoid lineage restricted progenitor cell | 3.85e-10 | 52 |
| myeloid cell | 6.37e-09 | 108 |
| common myeloid progenitor | 6.37e-09 | 108 |
| T cell | 2.43e-07 | 25 |
| pro-T cell | 2.43e-07 | 25 |
| mast cell | 5.52e-07 | 5 |
| basophil mast progenitor cell | 5.52e-07 | 5 |
| neuronal stem cell | 8.46e-07 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| hematologic cancer | 4.84e-52 | 51 |
| immune system cancer | 4.84e-52 | 51 |
| leukemia | 3.56e-45 | 39 |
| myeloid leukemia | 1.01e-36 | 31 |
| organ system cancer | 1.42e-24 | 137 |
| cancer | 1.59e-14 | 235 |
| disease of cellular proliferation | 1.07e-13 | 239 |
| lymphoma | 6.88e-11 | 10 |
| chronic leukemia | 4.01e-10 | 8 |
