FFCP PHASE1:Hg19::chr6:138195573..138195584,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7128 | |EntrezGene=7128 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11896 | |HGNC=11896 | ||
|TSSclassifier=strong | |||
|UniProt=Q5PY18 | |UniProt=Q5PY18 | ||
|association_with_transcript=-412bp_to_AY820830_5end | |association_with_transcript=-412bp_to_AY820830_5end | ||
|cluster_id=chr6:138195573..138195584,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_23_at_TNFAIP3_5end | |description=CAGE_peak_23_at_TNFAIP3_5end | ||
|id=chr6:138195573..138195584,+ | |id=chr6:138195573..138195584,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.96e-62!42;CL:0000860!2.19e-57!45;CL:0000766!9.99e-48!76;CL:0000738!8.94e-41!140;CL:0002194!2.13e-40!63;CL:0000576!2.13e-40!63;CL:0000040!2.13e-40!63;CL:0000559!2.13e-40!63;CL:0002009!6.74e-39!65;CL:0000763!1.75e-38!112;CL:0000049!1.75e-38!112;CL:0000988!2.23e-36!182;CL:0000839!1.61e-35!70;CL:0000557!6.72e-35!71;CL:0000037!6.59e-34!172;CL:0000566!6.59e-34!172;CL:0002032!1.52e-32!165;CL:0000837!1.52e-32!165;CL:0002087!3.90e-31!119;CL:0002031!4.30e-26!124;CL:0000134!1.05e-15!358;CL:0002320!3.88e-15!365;CL:0000094!1.17e-13!8;CL:0000219!3.89e-13!390;CL:0000081!3.97e-13!11;CL:0000080!1.36e-12!6;CL:0000048!3.80e-12!430;CL:0000034!4.76e-12!444;CL:0000723!8.77e-12!436;CL:0002371!2.94e-08!591;CL:0000771!1.00e-07!2;CL:0000144!1.37e-07!625 | |ontology_enrichment_celltype=CL:0002057!3.96e-62!42;CL:0000860!2.19e-57!45;CL:0000766!9.99e-48!76;CL:0000738!8.94e-41!140;CL:0002194!2.13e-40!63;CL:0000576!2.13e-40!63;CL:0000040!2.13e-40!63;CL:0000559!2.13e-40!63;CL:0002009!6.74e-39!65;CL:0000763!1.75e-38!112;CL:0000049!1.75e-38!112;CL:0000988!2.23e-36!182;CL:0000839!1.61e-35!70;CL:0000557!6.72e-35!71;CL:0000037!6.59e-34!172;CL:0000566!6.59e-34!172;CL:0002032!1.52e-32!165;CL:0000837!1.52e-32!165;CL:0002087!3.90e-31!119;CL:0002031!4.30e-26!124;CL:0000134!1.05e-15!358;CL:0002320!3.88e-15!365;CL:0000094!1.17e-13!8;CL:0000219!3.89e-13!390;CL:0000081!3.97e-13!11;CL:0000080!1.36e-12!6;CL:0000048!3.80e-12!430;CL:0000034!4.76e-12!444;CL:0000723!8.77e-12!436;CL:0002371!2.94e-08!591;CL:0000771!1.00e-07!2;CL:0000144!1.37e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.69e-70;33!CL:0002057;9.69e-70;33!CL:0000473;1.96e-49;39!CL:0000234;1.96e-49;39!CL:0000576;3.15e-31;48!CL:0000766;6.58e-27;69!CL:0000081;3.51e-17;11!CL:0000771;1.01e-16;2!CL:0000094;1.44e-15;8!CL:0000763;3.40e-12;100!CL:0000775;5.83e-11;3!CL:0002087;1.42e-10;104!CL:0000738;1.31e-07;136!CL:0000988;4.54e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.53e-66,42;CL:0002057,1.53e-66,42;CL:0000473,8.63e-58,48;CL:0000234,8.63e-58,48;CL:0000766,1.46e-54,72;CL:0002194,1.57e-45,59;CL:0000576,1.57e-45,59;CL:0000040,1.57e-45,59;CL:0000559,1.57e-45,59;CL:0002009,6.00e-44,61;CL:0000839,2.10e-40,66;CL:0000557,9.31e-40,67;CL:0000763,3.04e-35,108;CL:0000049,3.04e-35,108;CL:0000738,3.20e-27,136;CL:0000988,2.88e-26,177;CL:0002032,2.15e-22,161;CL:0000837,2.15e-22,161;CL:0002087,8.22e-22,115;CL:0000037,2.69e-21,168;CL:0002031,9.27e-21,120;CL:0000081,3.12e-17,11;CL:0000771,1.01e-16,2;CL:0000094,1.27e-15,8;CL:0000775,4.90e-11,3;CL:0000134,6.48e-08,354;CL:0002320,1.12e-07,361;CL:0000219,7.71e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.18e-46;42!CL:0000049;3.30e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.30e-32!102;UBERON:0003061!1.30e-32!102;UBERON:0002193!1.59e-30!112;UBERON:0002371!5.09e-30!80;UBERON:0001474!2.48e-27!86;UBERON:0002405!6.55e-24!115;UBERON:0004765!5.17e-22!101;UBERON:0001434!5.17e-22!101;UBERON:0002384!2.31e-14!375;UBERON:0003081!1.10e-12!216;UBERON:0002204!5.93e-11!167 | |ontology_enrichment_uberon=UBERON:0002390!1.30e-32!102;UBERON:0003061!1.30e-32!102;UBERON:0002193!1.59e-30!112;UBERON:0002371!5.09e-30!80;UBERON:0001474!2.48e-27!86;UBERON:0002405!6.55e-24!115;UBERON:0004765!5.17e-22!101;UBERON:0001434!5.17e-22!101;UBERON:0002384!2.31e-14!375;UBERON:0003081!1.10e-12!216;UBERON:0002204!5.93e-11!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.80e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.94e-35,98;UBERON:0003061,1.94e-35,98;UBERON:0002371,1.08e-34,76;UBERON:0001474,6.31e-32,82;UBERON:0002193,7.89e-32,108;UBERON:0004765,8.39e-29,90;UBERON:0002405,9.09e-28,93;UBERON:0001434,1.36e-25,100;UBERON:0003081,3.87e-15,203;UBERON:0002204,6.42e-14,167;UBERON:0000926,2.67e-08,315;UBERON:0004120,2.67e-08,315;UBERON:0006603,2.67e-08,315;UBERON:0002384,2.36e-07,371;UBERON:0002331,3.72e-07,10;UBERON:0000358,3.72e-07,10;UBERON:0000307,3.72e-07,10;UBERON:0000091,3.72e-07,10;UBERON:0000087,3.72e-07,10;UBERON:0007010,3.72e-07,10;UBERON:0007806,3.72e-07,10;UBERON:0008780,3.72e-07,10;UBERON:0005728,3.72e-07,10 | |||
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| ||
|short_description=p23@TNFAIP3 | |short_description=p23@TNFAIP3 | ||
}} | }} |
Latest revision as of 03:43, 25 September 2015
Short description: | p23@TNFAIP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_TNFAIP3_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -412bp_to_AY820830_5end |
EntrezGene: | TNFAIP3 |
HGNC: | 11896 |
UniProt: | Q5PY18 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.53e-66 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-66 | 42 |
defensive cell | 8.63e-58 | 48 |
phagocyte | 8.63e-58 | 48 |
myeloid leukocyte | 1.46e-54 | 72 |
monopoietic cell | 1.57e-45 | 59 |
monocyte | 1.57e-45 | 59 |
monoblast | 1.57e-45 | 59 |
promonocyte | 1.57e-45 | 59 |
macrophage dendritic cell progenitor | 6.00e-44 | 61 |
myeloid lineage restricted progenitor cell | 2.10e-40 | 66 |
granulocyte monocyte progenitor cell | 9.31e-40 | 67 |
myeloid cell | 3.04e-35 | 108 |
common myeloid progenitor | 3.04e-35 | 108 |
leukocyte | 3.20e-27 | 136 |
hematopoietic cell | 2.88e-26 | 177 |
hematopoietic oligopotent progenitor cell | 2.15e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-22 | 161 |
nongranular leukocyte | 8.22e-22 | 115 |
hematopoietic stem cell | 2.69e-21 | 168 |
hematopoietic lineage restricted progenitor cell | 9.27e-21 | 120 |
blood cell | 3.12e-17 | 11 |
eosinophil | 1.01e-16 | 2 |
granulocyte | 1.27e-15 | 8 |
neutrophil | 4.90e-11 | 3 |
mesenchymal cell | 6.48e-08 | 354 |
connective tissue cell | 1.12e-07 | 361 |
motile cell | 7.71e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.94e-35 | 98 |
blood island | 1.94e-35 | 98 |
bone marrow | 1.08e-34 | 76 |
bone element | 6.31e-32 | 82 |
hemolymphoid system | 7.89e-32 | 108 |
skeletal element | 8.39e-29 | 90 |
immune system | 9.09e-28 | 93 |
skeletal system | 1.36e-25 | 100 |
lateral plate mesoderm | 3.87e-15 | 203 |
musculoskeletal system | 6.42e-14 | 167 |
mesoderm | 2.67e-08 | 315 |
mesoderm-derived structure | 2.67e-08 | 315 |
presumptive mesoderm | 2.67e-08 | 315 |
connective tissue | 2.36e-07 | 371 |
umbilical cord | 3.72e-07 | 10 |
blastocyst | 3.72e-07 | 10 |
blastula | 3.72e-07 | 10 |
bilaminar disc | 3.72e-07 | 10 |
inner cell mass | 3.72e-07 | 10 |
cleaving embryo | 3.72e-07 | 10 |
connecting stalk | 3.72e-07 | 10 |
inner cell mass derived epiblast | 3.72e-07 | 10 |
extraembryonic mesoderm | 3.72e-07 | 10 |