FFCP PHASE1:Hg19::chr17:45928521..45928539,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80320 | |EntrezGene=80320 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14530 | |HGNC=14530 | ||
|TSSclassifier=strong | |||
|UniProt=Q3SY56 | |UniProt=Q3SY56 | ||
|association_with_transcript=19bp_to_ENST00000536300,uc002img.1_5end | |association_with_transcript=19bp_to_ENST00000536300,uc002img.1_5end | ||
|cluster_id=chr17:45928521..45928539,- | |||
|coexpression_cluster_id=C159 | |coexpression_cluster_id=C159 | ||
|description=CAGE_peak_1_at_SP6_5end | |description=CAGE_peak_1_at_SP6_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.43e-29!254;CL:0002076!2.43e-14!43;CL:0000223!3.54e-12!59;CL:0002251!5.22e-09!21 | |ontology_enrichment_celltype=CL:0000066!2.43e-29!254;CL:0002076!2.43e-14!43;CL:0000223!3.54e-12!59;CL:0002251!5.22e-09!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.15e-11;42!CL:0002251;1.21e-09;20!CL:0002159;1.78e-07;14!CL:0000312;2.83e-07;5!CL:0002368;5.71e-07;13 | |ontology_enrichment_celltype_v019=CL:0002076;1.15e-11;42!CL:0002251;1.21e-09;20!CL:0002159;1.78e-07;14!CL:0000312;2.83e-07;5!CL:0002368;5.71e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.12e-21,253;CL:0002076,1.20e-14,42;CL:0000223,6.25e-12,58;CL:0002251,1.53e-09,20;CL:0002159,1.97e-07,14;CL:0000312,2.87e-07,5;CL:0002368,5.73e-07,13 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!2.64e-24!106;DOID:0050687!2.02e-20!143;DOID:162!3.50e-14!235;DOID:14566!1.79e-13!239;DOID:1749!1.10e-07!14 | |ontology_enrichment_disease=DOID:305!2.64e-24!106;DOID:0050687!2.02e-20!143;DOID:162!3.50e-14!235;DOID:14566!1.79e-13!239;DOID:1749!1.10e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.29e-07;14 | |ontology_enrichment_disease_v019=DOID:1749;5.29e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,5.89e-12,106;DOID:0050687,5.00e-11,143;DOID:1749,4.92e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.04e-16!169;UBERON:0000925!1.04e-16!169;UBERON:0006595!1.04e-16!169;UBERON:0001007!2.14e-12!155;UBERON:0001555!2.14e-12!155;UBERON:0007026!2.14e-12!155;UBERON:0004921!3.63e-11!129;UBERON:0004185!3.63e-11!129;UBERON:0000077!9.24e-11!130;UBERON:0001004!1.03e-10!72;UBERON:0000464!2.89e-09!104;UBERON:0005156!3.03e-09!59;UBERON:0000990!3.03e-09!59;UBERON:0000065!3.08e-09!53;UBERON:0003133!3.86e-08!48;UBERON:0005911!4.39e-08!82;UBERON:0005157!7.44e-08!51;UBERON:0000466!9.83e-08!126;UBERON:0005153!1.45e-07!37;UBERON:0001008!4.11e-07!45;UBERON:0001041!6.06e-07!98 | |ontology_enrichment_uberon=UBERON:0004119!1.04e-16!169;UBERON:0000925!1.04e-16!169;UBERON:0006595!1.04e-16!169;UBERON:0001007!2.14e-12!155;UBERON:0001555!2.14e-12!155;UBERON:0007026!2.14e-12!155;UBERON:0004921!3.63e-11!129;UBERON:0004185!3.63e-11!129;UBERON:0000077!9.24e-11!130;UBERON:0001004!1.03e-10!72;UBERON:0000464!2.89e-09!104;UBERON:0005156!3.03e-09!59;UBERON:0000990!3.03e-09!59;UBERON:0000065!3.08e-09!53;UBERON:0003133!3.86e-08!48;UBERON:0005911!4.39e-08!82;UBERON:0005157!7.44e-08!51;UBERON:0000466!9.83e-08!126;UBERON:0005153!1.45e-07!37;UBERON:0001008!4.11e-07!45;UBERON:0001041!6.06e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0003101;3.10e-08;22!UBERON:0000079;3.10e-08;22!UBERON:0005911;1.50e-07;36!UBERON:0005631;1.88e-07;10!UBERON:0000158;1.88e-07;10!UBERON:0004921;2.22e-07;33!UBERON:0003350;9.78e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0003101;3.10e-08;22!UBERON:0000079;3.10e-08;22!UBERON:0005911;1.50e-07;36!UBERON:0005631;1.88e-07;10!UBERON:0000158;1.88e-07;10!UBERON:0004921;2.22e-07;33!UBERON:0003350;9.78e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.46e-13,160;UBERON:0000925,4.46e-13,160;UBERON:0006595,4.46e-13,160;UBERON:0005631,3.12e-10,14;UBERON:0000158,3.12e-10,14;UBERON:0005156,3.77e-10,59;UBERON:0000990,3.77e-10,59;UBERON:0001007,3.40e-09,145;UBERON:0001555,3.40e-09,145;UBERON:0007026,3.40e-09,145;UBERON:0001046,4.42e-09,19;UBERON:0004921,8.12e-09,118;UBERON:0005153,1.02e-08,37;UBERON:0003101,2.94e-08,22;UBERON:0000079,2.94e-08,22;UBERON:0005157,3.08e-08,47;UBERON:0001008,5.96e-08,48;UBERON:0004122,7.63e-08,15;UBERON:0003064,7.85e-08,28;UBERON:0003133,2.04e-07,48;UBERON:0000161,2.21e-07,36;UBERON:0006554,2.35e-07,47;UBERON:0003124,3.27e-07,7;UBERON:0000162,5.17e-07,14;UBERON:0001353,5.17e-07,14;UBERON:0000163,5.17e-07,14;UBERON:0006866,5.17e-07,14;UBERON:0000164,5.17e-07,14;UBERON:0000931,5.17e-07,14;UBERON:0005904,7.98e-07,4;UBERON:0003350,8.25e-07,8;UBERON:0003100,8.28e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,3.27662058195258,1.58260186937072,0,0,0,0,0,0,0,0,0.626909442956176,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,6.43594857135249,3.0120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0.403213486449465,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0.976248230192678,0,0,0,0,0,0,0,0.183201743930407,0,0,1.3082821564276,0,0,0,0,0,0.560677600142307,0,0.74000264525148,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,1.31693286264251,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0.103052529238439,0.257640540045629,0,0.168776332241266,0.0974370051611986,0,0,0,0.355009592516614,0.201504196455281,0.339121184620975,2.89891279744945,5.45492241181669,3.44165514466805,1.70763188581434,0.397589304964456,2.44007280025989,4.66474747569167,1.26160425437814,0.72995471815166,1.56449532329816,0,1.38134921352481,0,0,0.354920400119532,0.505754070234305,0.241011029883482,0.330881918197182,0,0.237270619111097,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,19.8011386054413,0,3.07300799144152,4.49607013030478,1.50793458617446,0.277765335475589,0,0,0,0,0,1.29929802984966,2.31492756288305,0.380508304469197,2.37061319387782,2.57545848628462,0,0,0.148631162288728,0,1.34385702559088,1.41775097242386,4.03013352162817,4.94077695473735,1.53353071666084,0.492663237895943,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,11.5188477149579,0,3.32629322662648,0,0,0.280660094433074,0,0,0,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0,14.7448528501779,5.81468763879526,3.03867263488458,0,0,0,0.451199612907412,0.15403067420883,0,0,0.316654886678627,0,0.170093705276516,0,1.54227252690289,0,1.00337954770971,0.509752546090077,0,0,0,0,0,0,0,8.3463219434655,2.83865340936865,2.55779449753823,1.14853107599234,0,1.6068392984416,0.096670718292122,0,0,0,0,0,0,0,0.991709492165869,1.53752053892085,2.4246415373971,2.73126008309985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,4.69211592875051,1.08890984861323,9.22609247612436,2.15252686335615,5.05414427002877,3.54744122829341,0.689170200620878,0,0,0,0,0,0,0,0,4.16613877397145,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,0.935702702041099,0.293016358543788,0,0,1.98895302764489,2.62618933211459,1.18785872333055,3.68592842519078,0,0,0.222617410045812,0,20.9014154046714,0,0,1.0077309914171,0.20453736500431,0.123084805461069,0,0.898683511473268,0.716084698702437,0,3.55116260292961,0,0,0,0,0,0,15.1305799993419,2.17499872630438,0.227586896570999,0,2.36387681767936,0.344743373241465,0,0.173624994933292,0,0,0,0.221158519862449,0,0,0,4.0432885840795,0.307801034015188,0,202.896235861493,38.5060294517922,115.926745840783,2.23300811812344,1.37396390102793,2.13213910407454,1.02193298195737,0,0,1.35357396370308,2.15668787749514,7.04850665298539,0.948768663620925,0.158936578980379,1.05499032264014,2.61172493054636,15.2661317148656,0,1.99052386215701,0.530745387020035,6.11030144933625,0,0,0,0.067401132980677,0,0,0,3.13063390291344,0.242780379534093,31.9613366308006,0,0,0.126373159256976,1.50323419414493,0.207376382794494,0,0,0,0,0.569219092059585,0,0.173559738335131,3.72371110174635,3.04707223031409,3.4945333648406,0,0,0.0730893170861856,0.410577285266046,1.06687918137261,0,0,0.274083849293502,0.397429223405979,0,8.60426084033133,1.28254112402454,0,2.39771531498556,2.3054466744657,0,0,0.14405479798815,0.869767748958028,7.07082103850386,0.135904206073614,0.209205692624666,0.611989305817931,0,0,0,0,0,0,0.279282401272254,0.229160424011684,2.15361907373044,8.58619702145662,0,0.223171457441873,1.34366944973453,1.44119953416961,12.8145544480199,0.0787831823072236,0.0824158583811665,0,0,0,0,0,1.76828463311521,0.550157746388935,0.83088067605837,0,0,0,0.670869375198532,0.157611414598396,0.629455057619977,0.105600336519406,0,3.83830394638891,0,0,0,0,0,0,1.19730191562487,0,2.21504428321048,0.226624183040251,0,0,0.129282956361551,0.13223260174269,0.513260513652988,12.6866704017001,0.747511887973863,0.943225830597996,0.414239055347196,0,0,0,5.74507131993164,0,0,0.306345576763462,0,0.942324577501406,0,0,0,0,0,0,0,0.249960815924213,0,0,0,2.34167452903441,3.4781046866598,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0.159296767163702,0,4.9684146200403,0,0.797525143673985,0.521745061811734,0.751288044986092,1.14241563650639,0,0.181848659202559,1.18151612746737,1.3921012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| ||
|short_description=p1@SP6 | |short_description=p1@SP6 | ||
}} | }} |
Latest revision as of 04:36, 25 September 2015
Short description: | p1@SP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SP6_5end |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | 19bp_to_ENST00000536300, uc002img.1_5end |
EntrezGene: | SP6 |
HGNC: | 14530 |
UniProt: | Q3SY56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.12e-21 | 253 |
endo-epithelial cell | 1.20e-14 | 42 |
endodermal cell | 6.25e-12 | 58 |
epithelial cell of alimentary canal | 1.53e-09 | 20 |
general ecto-epithelial cell | 1.97e-07 | 14 |
keratinocyte | 2.87e-07 | 5 |
respiratory epithelial cell | 5.73e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.46e-13 | 160 |
endoderm | 4.46e-13 | 160 |
presumptive endoderm | 4.46e-13 | 160 |
extraembryonic membrane | 3.12e-10 | 14 |
membranous layer | 3.12e-10 | 14 |
reproductive structure | 3.77e-10 | 59 |
reproductive system | 3.77e-10 | 59 |
digestive system | 3.40e-09 | 145 |
digestive tract | 3.40e-09 | 145 |
primitive gut | 3.40e-09 | 145 |
hindgut | 4.42e-09 | 19 |
subdivision of digestive tract | 8.12e-09 | 118 |
epithelial bud | 1.02e-08 | 37 |
male organism | 2.94e-08 | 22 |
male reproductive system | 2.94e-08 | 22 |
epithelial fold | 3.08e-08 | 47 |
renal system | 5.96e-08 | 48 |
genitourinary system | 7.63e-08 | 15 |
intermediate mesoderm | 7.85e-08 | 28 |
reproductive organ | 2.04e-07 | 48 |
orifice | 2.21e-07 | 36 |
urinary system structure | 2.35e-07 | 47 |
chorion | 3.27e-07 | 7 |
cloaca | 5.17e-07 | 14 |
anal region | 5.17e-07 | 14 |
embryonic cloaca | 5.17e-07 | 14 |
terminal part of digestive tract | 5.17e-07 | 14 |
primitive urogenital sinus | 5.17e-07 | 14 |
proctodeum | 5.17e-07 | 14 |
duct of male reproductive system | 7.98e-07 | 4 |
epithelium of mucosa | 8.25e-07 | 8 |
female organism | 8.28e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.89e-12 | 106 |
cell type cancer | 5.00e-11 | 143 |
squamous cell carcinoma | 4.92e-07 | 14 |