FFCP PHASE1:Mm9::chr3:80606601..80606652,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14800|HGNC=|MCL_coexpression_id=1|UniProt=G5E8H1,E9QKC0,P23819,Q4LG64,Q80VM6|association_with_transcript=60bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end|description=CAGE_peak_1_at_Gria2_5end|id=chr3:80606601..80606652,-|ontology_enrichment_celltype=CL:0000540!9.06e-15!33;CL:0000047!9.06e-15!33;CL:0000031!9.06e-15!33;CL:0000404!9.06e-15!33;CL:0000117!1.00e-13!23;CL:0000337!1.00e-13!23;CL:0000221!5.03e-12!44;CL:0000133!5.03e-12!44;CL:0002319!6.98e-12!43;CL:0000393!5.36e-10!39;CL:0000211!5.36e-10!39;CL:0000055!6.70e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-18,33;CL:0000047,5.22e-18,33;CL:0000031,5.22e-18,33;CL:0000404,5.22e-18,33;CL:0000117,4.22e-17,23;CL:0000337,4.22e-17,23;CL:0000393,2.11e-13,39;CL:0000211,2.11e-13,39;CL:0000221,4.29e-12,44;CL:0000133,4.29e-12,44;CL:0002319,6.62e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.14e-30!73;UBERON:0005743!3.14e-30!73;UBERON:0000073!6.01e-30!75;UBERON:0001016!6.01e-30!75;UBERON:0002346!5.52e-29!71;UBERON:0003075!5.52e-29!71;UBERON:0007284!5.52e-29!71;UBERON:0004121!9.33e-28!102;UBERON:0000924!9.33e-28!102;UBERON:0006601!9.33e-28!102;UBERON:0001049!6.58e-25!52;UBERON:0005068!6.58e-25!52;UBERON:0006241!6.58e-25!52;UBERON:0007135!6.58e-25!52;UBERON:0000033!6.84e-24!63;UBERON:0000955!8.38e-24!50;UBERON:0006238!8.38e-24!50;UBERON:0002616!5.44e-23!49;UBERON:0003056!1.14e-21!49;UBERON:0002020!4.08e-20!34;UBERON:0003080!1.02e-19!40;UBERON:0002780!4.65e-19!39;UBERON:0001890!4.65e-19!39;UBERON:0006240!4.65e-19!39;UBERON:0002791!5.35e-17!29;UBERON:0003528!5.35e-17!29;UBERON:0001893!5.35e-17!29;UBERON:0007811!8.87e-13!86;UBERON:0000153!1.46e-12!94;UBERON:0000956!2.36e-12!21;UBERON:0001869!2.36e-12!21;UBERON:0000203!2.36e-12!21;UBERON:0002619!5.62e-10!17;UBERON:0002021!1.54e-08!10;UBERON:0000411!1.54e-08!10;UBERON:0001950!1.54e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.32e-35,73;UBERON:0001016,3.37e-33,75;UBERON:0002346,2.82e-32,64;UBERON:0003075,2.82e-32,64;UBERON:0007284,2.82e-32,64;UBERON:0000073,3.77e-31,54;UBERON:0001049,2.20e-29,52;UBERON:0005068,2.20e-29,52;UBERON:0006241,2.20e-29,52;UBERON:0007135,2.20e-29,52;UBERON:0004121,2.44e-29,95;UBERON:0000924,2.44e-29,95;UBERON:0006601,2.44e-29,95;UBERON:0010371,2.23e-26,73;UBERON:0000955,1.61e-25,47;UBERON:0006238,1.61e-25,47;UBERON:0003056,5.53e-25,49;UBERON:0002020,1.11e-24,34;UBERON:0002616,1.60e-24,46;UBERON:0003080,2.48e-23,40;UBERON:0002780,1.68e-22,39;UBERON:0001890,1.68e-22,39;UBERON:0006240,1.68e-22,39;UBERON:0003528,1.06e-20,29;UBERON:0002791,1.06e-20,29;UBERON:0001893,1.06e-20,29;UBERON:0010314,1.12e-20,92;UBERON:0000956,8.83e-15,21;UBERON:0001869,8.83e-15,21;UBERON:0000203,8.83e-15,21;UBERON:0002619,9.32e-12,17;UBERON:0002021,1.78e-10,10;UBERON:0000411,1.78e-10,10;UBERON:0001950,1.78e-10,10;UBERON:0002420,4.30e-07,8;UBERON:0007245,4.30e-07,8;UBERON:0010009,4.30e-07,8;UBERON:0010011,4.30e-07,8;UBERON:0000454,4.30e-07,8|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.0027273044145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,12.7459370341547,13.2247744818008,12.0427966666174,0,0,0,0,0,0.898800331555214,3.07374644257244,35.1507785725739,16.4707244764663,19.9808713283813,20.2812198926701,23.412065340871,20.4559634688973,14.185129710699,18.3843757322004,25.3266526298594,36.2632040161933,32.2573719838111,12.6610836220986,14.0890971147711,16.6692278578163,13.959149950069,33.7657566019008,45.6866760852662,38.0070875261031,49.830088279686,26.2823218613674,0.302904773332736,0.226714680320357,0,0,0,0.539703191637817,0,0,2.66844398250329,0,0,0,1.54927761754349,0,0,0,0,0,0,2.16949371466214,0,3.26572705942614,1.38788261412909,2.43572382649713,1.15307748628029,2.11011696773672,2.4693628498498,0.879666139307728,0,0,0,0.161766849947409,0,0,0,35.4264764383972,50.4766563420427,0,0,0,0,37.148078572396,93.7876235778184,57.9266563240305,119.069659331709,135.273476927745,41.3498208673525,74.955463537304,0.203678727700633,0.746441823660558,3.28539585963777,4.20883711772948,0.780722657776222,1.14951052216736,1.62055916824814,4.06903008156431,5.71506592871154,6.79002717509704,7.96464658757695,12.1590584247337,0,0.756424320671277,1.05570674498369,1.53437012699302,1.94633074457919,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,169.914278439815,58.5527244438128,0,0,0.639864751605702,0.696710015581316,0.38660238396628,0,0.444756087689741,0.190225626112559,0.474529061544512,0.164698954724011,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0.195133647857799,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,12.2018448390722,21.4497386463732,0,0,2.83957397474631,2.73307121007647,6.03185513651837,2.15071918157297,3.34198011123591,2.83076530788832,2.42886421004937,8.18316402151673,5.13874111330481,121.459457607443,0,0.534196811001766,0.325773918707152,0.164970122972535,1.32745138339963,0.485561272309963,0,0.943025398779491,0,0,0.775284879504663,0.363533729477506,2.13898427030833,0.316036757935816,0,0,6.46835250932197,1.08036656418786,0.646793418913773,1.28602221018955,3.54680467284547,2.85390108163313,4.60737257685939,1.2178597964584,0,0,0,0,0,0.0603129249281559,0,0.492422699235184,0.291480836629851,18.913380805072,0,1.23832120777933,0.185194527369712,0.188368457004691,0.136694227721025,0,0.169978429993855,0.139951452323658,0.552799895217695,0.954670618015114,0.158167996790568,1.01659733563424,0.540026704109006,1.04544148007234,0.87345025498471,0.269728692769641,0.743881101528023,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0.209718688851422,0,0,0.316011120628178,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0,0.201652370273681,0,0.192423683280659,0.467507608726276,0,0,0,0,0.19318959403219,0,0.183151624267265,0,0,83.0185208647088,116.462284836316,100.829610365334,90.222920730436,106.87287308422,103.488963942389,110.028667537784,105.825482757692,101.503899612462,104.587582973868,0.62272408550506,6.3843979744165,5.29274177837816,10.6966955510049,4.61148957781561,6.25067928730048,8.00088220085815,8.65347240403356,6.4183841918363,9.6024940470243,10.1391719956096,10.9403278003924,11.7988299412052,11.3964771280667,12.5783677012793,6.66811167796303,10.0819363572024,10.2241886845764,8.24171801606613,9.56792980873583,7.88599280486455,11.3584515941976,10.9680647375768,12.0637525804833,11.7636725519163,8.96914843651771,10.426894453748,12.3642764375786,12.4939784738193,8.41713407486608,8.89762635931306,9.65343927280522,10.6400071224119,12.7048209772492,10.2240503820005,12.7403394748352,7.71974307869848,6.66100267549725,2.29545998482612,1.32354851471709,0.231867835620421|short_description=p1@Gria2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14800 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=G5E8H1,E9QKC0,P23819,Q4LG64,Q80VM6 | |||
|association_with_transcript=60bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end | |||
|cluster_id=chr3:80606601..80606652,- | |||
|description=CAGE_peak_1_at_Gria2_5end | |||
|id=chr3:80606601..80606652,- | |||
|ontology_enrichment_celltype=CL:0000540!9.06e-15!33;CL:0000047!9.06e-15!33;CL:0000031!9.06e-15!33;CL:0000404!9.06e-15!33;CL:0000117!1.00e-13!23;CL:0000337!1.00e-13!23;CL:0000221!5.03e-12!44;CL:0000133!5.03e-12!44;CL:0002319!6.98e-12!43;CL:0000393!5.36e-10!39;CL:0000211!5.36e-10!39;CL:0000055!6.70e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-18,33;CL:0000047,5.22e-18,33;CL:0000031,5.22e-18,33;CL:0000404,5.22e-18,33;CL:0000117,4.22e-17,23;CL:0000337,4.22e-17,23;CL:0000393,2.11e-13,39;CL:0000211,2.11e-13,39;CL:0000221,4.29e-12,44;CL:0000133,4.29e-12,44;CL:0002319,6.62e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.14e-30!73;UBERON:0005743!3.14e-30!73;UBERON:0000073!6.01e-30!75;UBERON:0001016!6.01e-30!75;UBERON:0002346!5.52e-29!71;UBERON:0003075!5.52e-29!71;UBERON:0007284!5.52e-29!71;UBERON:0004121!9.33e-28!102;UBERON:0000924!9.33e-28!102;UBERON:0006601!9.33e-28!102;UBERON:0001049!6.58e-25!52;UBERON:0005068!6.58e-25!52;UBERON:0006241!6.58e-25!52;UBERON:0007135!6.58e-25!52;UBERON:0000033!6.84e-24!63;UBERON:0000955!8.38e-24!50;UBERON:0006238!8.38e-24!50;UBERON:0002616!5.44e-23!49;UBERON:0003056!1.14e-21!49;UBERON:0002020!4.08e-20!34;UBERON:0003080!1.02e-19!40;UBERON:0002780!4.65e-19!39;UBERON:0001890!4.65e-19!39;UBERON:0006240!4.65e-19!39;UBERON:0002791!5.35e-17!29;UBERON:0003528!5.35e-17!29;UBERON:0001893!5.35e-17!29;UBERON:0007811!8.87e-13!86;UBERON:0000153!1.46e-12!94;UBERON:0000956!2.36e-12!21;UBERON:0001869!2.36e-12!21;UBERON:0000203!2.36e-12!21;UBERON:0002619!5.62e-10!17;UBERON:0002021!1.54e-08!10;UBERON:0000411!1.54e-08!10;UBERON:0001950!1.54e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.32e-35,73;UBERON:0001016,3.37e-33,75;UBERON:0002346,2.82e-32,64;UBERON:0003075,2.82e-32,64;UBERON:0007284,2.82e-32,64;UBERON:0000073,3.77e-31,54;UBERON:0001049,2.20e-29,52;UBERON:0005068,2.20e-29,52;UBERON:0006241,2.20e-29,52;UBERON:0007135,2.20e-29,52;UBERON:0004121,2.44e-29,95;UBERON:0000924,2.44e-29,95;UBERON:0006601,2.44e-29,95;UBERON:0010371,2.23e-26,73;UBERON:0000955,1.61e-25,47;UBERON:0006238,1.61e-25,47;UBERON:0003056,5.53e-25,49;UBERON:0002020,1.11e-24,34;UBERON:0002616,1.60e-24,46;UBERON:0003080,2.48e-23,40;UBERON:0002780,1.68e-22,39;UBERON:0001890,1.68e-22,39;UBERON:0006240,1.68e-22,39;UBERON:0003528,1.06e-20,29;UBERON:0002791,1.06e-20,29;UBERON:0001893,1.06e-20,29;UBERON:0010314,1.12e-20,92;UBERON:0000956,8.83e-15,21;UBERON:0001869,8.83e-15,21;UBERON:0000203,8.83e-15,21;UBERON:0002619,9.32e-12,17;UBERON:0002021,1.78e-10,10;UBERON:0000411,1.78e-10,10;UBERON:0001950,1.78e-10,10;UBERON:0002420,4.30e-07,8;UBERON:0007245,4.30e-07,8;UBERON:0010009,4.30e-07,8;UBERON:0010011,4.30e-07,8;UBERON:0000454,4.30e-07,8 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.0027273044145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,12.7459370341547,13.2247744818008,12.0427966666174,0,0,0,0,0,0.898800331555214,3.07374644257244,35.1507785725739,16.4707244764663,19.9808713283813,20.2812198926701,23.412065340871,20.4559634688973,14.185129710699,18.3843757322004,25.3266526298594,36.2632040161933,32.2573719838111,12.6610836220986,14.0890971147711,16.6692278578163,13.959149950069,33.7657566019008,45.6866760852662,38.0070875261031,49.830088279686,26.2823218613674,0.302904773332736,0.226714680320357,0,0,0,0.539703191637817,0,0,2.66844398250329,0,0,0,1.54927761754349,0,0,0,0,0,0,2.16949371466214,0,3.26572705942614,1.38788261412909,2.43572382649713,1.15307748628029,2.11011696773672,2.4693628498498,0.879666139307728,0,0,0,0.161766849947409,0,0,0,35.4264764383972,50.4766563420427,0,0,0,0,37.148078572396,93.7876235778184,57.9266563240305,119.069659331709,135.273476927745,41.3498208673525,74.955463537304,0.203678727700633,0.746441823660558,3.28539585963777,4.20883711772948,0.780722657776222,1.14951052216736,1.62055916824814,4.06903008156431,5.71506592871154,6.79002717509704,7.96464658757695,12.1590584247337,0,0.756424320671277,1.05570674498369,1.53437012699302,1.94633074457919,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,169.914278439815,58.5527244438128,0,0,0.639864751605702,0.696710015581316,0.38660238396628,0,0.444756087689741,0.190225626112559,0.474529061544512,0.164698954724011,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0.195133647857799,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,12.2018448390722,21.4497386463732,0,0,2.83957397474631,2.73307121007647,6.03185513651837,2.15071918157297,3.34198011123591,2.83076530788832,2.42886421004937,8.18316402151673,5.13874111330481,121.459457607443,0,0.534196811001766,0.325773918707152,0.164970122972535,1.32745138339963,0.485561272309963,0,0.943025398779491,0,0,0.775284879504663,0.363533729477506,2.13898427030833,0.316036757935816,0,0,6.46835250932197,1.08036656418786,0.646793418913773,1.28602221018955,3.54680467284547,2.85390108163313,4.60737257685939,1.2178597964584,0,0,0,0,0,0.0603129249281559,0,0.492422699235184,0.291480836629851,18.913380805072,0,1.23832120777933,0.185194527369712,0.188368457004691,0.136694227721025,0,0.169978429993855,0.139951452323658,0.552799895217695,0.954670618015114,0.158167996790568,1.01659733563424,0.540026704109006,1.04544148007234,0.87345025498471,0.269728692769641,0.743881101528023,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0.209718688851422,0,0,0.316011120628178,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0,0.201652370273681,0,0.192423683280659,0.467507608726276,0,0,0,0,0.19318959403219,0,0.183151624267265,0,0,83.0185208647088,116.462284836316,100.829610365334,90.222920730436,106.87287308422,103.488963942389,110.028667537784,105.825482757692,101.503899612462,104.587582973868,0.62272408550506,6.3843979744165,5.29274177837816,10.6966955510049,4.61148957781561,6.25067928730048,8.00088220085815,8.65347240403356,6.4183841918363,9.6024940470243,10.1391719956096,10.9403278003924,11.7988299412052,11.3964771280667,12.5783677012793,6.66811167796303,10.0819363572024,10.2241886845764,8.24171801606613,9.56792980873583,7.88599280486455,11.3584515941976,10.9680647375768,12.0637525804833,11.7636725519163,8.96914843651771,10.426894453748,12.3642764375786,12.4939784738193,8.41713407486608,8.89762635931306,9.65343927280522,10.6400071224119,12.7048209772492,10.2240503820005,12.7403394748352,7.71974307869848,6.66100267549725,2.29545998482612,1.32354851471709,0.231867835620421 | |||
|short_description=p1@Gria2 | |||
}} |
Latest revision as of 17:45, 25 September 2015
Short description: | p1@Gria2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gria2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 60bp_to_ENSMUST00000075316, ENSMUST00000107745, ENSMUST00000107746, NM_001039195, NM_001083806, NM_013540, uc008poa.1, uc008pob.1, uc008poc.1, uc008pod.1, uc008poe.1_5end |
EntrezGene: | Gria2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.22e-18 | 33 |
neuronal stem cell | 5.22e-18 | 33 |
neuroblast | 5.22e-18 | 33 |
electrically signaling cell | 5.22e-18 | 33 |
CNS neuron (sensu Vertebrata) | 4.22e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.22e-17 | 23 |
electrically responsive cell | 2.11e-13 | 39 |
electrically active cell | 2.11e-13 | 39 |
ectodermal cell | 4.29e-12 | 44 |
neurectodermal cell | 4.29e-12 | 44 |
neural cell | 6.62e-12 | 43 |