FFCP PHASE1:Mm9::chr2:164312356..164312398,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52840 | |EntrezGene=52840 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9CRD4,Q330P7 | |UniProt=Q9CRD4,Q330P7 | ||
|association_with_transcript=0bp_to_ENSMUST00000109349,NM_001048228,uc008nuz.1_5end | |association_with_transcript=0bp_to_ENSMUST00000109349,NM_001048228,uc008nuz.1_5end | ||
|cluster_id=chr2:164312356..164312398,+ | |||
|description=CAGE_peak_3_at_Dbndd2_5end | |description=CAGE_peak_3_at_Dbndd2_5end | ||
|id=chr2:164312356..164312398,+ | |id=chr2:164312356..164312398,+ | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,4.78e-09,8;CL:0000333,7.06e-07,10;CL:0000095,7.06e-07,10;CL:0000243,7.06e-07,10;CL:0000123,7.06e-07,10;CL:0000125,7.06e-07,10;CL:0000030,7.06e-07,10;CL:0000339,7.06e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.39e-09!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.91e-12,73;UBERON:0000073,6.57e-12,54;UBERON:0001016,1.17e-11,75;UBERON:0000955,2.27e-11,47;UBERON:0006238,2.27e-11,47;UBERON:0002616,9.58e-11,46;UBERON:0001049,1.13e-10,52;UBERON:0005068,1.13e-10,52;UBERON:0006241,1.13e-10,52;UBERON:0007135,1.13e-10,52;UBERON:0002021,4.03e-09,10;UBERON:0000411,4.03e-09,10;UBERON:0001950,4.03e-09,10;UBERON:0007023,9.17e-09,51;UBERON:0002619,1.12e-08,17;UBERON:0003528,1.14e-08,29;UBERON:0002791,1.14e-08,29;UBERON:0001893,1.14e-08,29;UBERON:0002020,1.15e-07,34;UBERON:0000956,1.41e-07,21;UBERON:0001869,1.41e-07,21;UBERON:0000203,1.41e-07,21;UBERON:0003080,1.62e-07,40;UBERON:0002346,2.94e-07,64;UBERON:0003075,2.94e-07,64;UBERON:0007284,2.94e-07,64;UBERON:0004121,3.75e-07,95;UBERON:0000924,3.75e-07,95;UBERON:0006601,3.75e-07,95;UBERON:0002780,4.97e-07,39;UBERON:0001890,4.97e-07,39;UBERON:0006240,4.97e-07,39 | |||
|phase1_expression=0.160148847104794,2.09385244583617,0,0,0,1.00727563147134,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0.639969691173627,1.37645568640302,1.72269589234506,1.29228598847722,0.646413698057667,1.33016393619462,1.76421090831952,2.88249663851896,0,0,0,0.288851619751275,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0.377690453926732,0.405507724878058,0.183546752161682,0,5.66865406589161,7.46933021297204,6.41618666945135,4.19959264876088,8.62515386189829,0,0,0,2.82985379639542,2.29226751951005,1.54701627683233,0,0,0,1.69422266034566,3.55717918444456,0,0,0,5.39280198933128,15.3687322128622,0,0,0,0.285650984403804,1.76694832761291,0.122490799214954,0,0,1.10115880999389,2.55374676170375,2.76491759861238,0,0.0914876436024097,0,2.51264699101243,1.12552522006336,2.59757021220577,0.589257170947335,0.569486723196412,0.186399445825301,0.37863096666592,0.529000920747499,1.15945795480671,0,0,0,0,0,1.12355536105401,4.09032774187339,8.05336614268893,6.71345191569646,0.14084341977668,1.28326477414318,0,0,0.649473123033642,1.01343946190039,1.01104889002957,0.91347103775248,0,0.593768556259299,0.173485326766136,0.608930956624282,0,0.301445281105245,0.23517741427141,0.125666591329675,0.247194967734374,0.578397427679647,0,0.161766849947409,0.220841518460394,0.484875253135222,0,2.63502717310392,2.72280718857492,2.04365644166873,0,0,0,1.3481157546434,7.32000964509802,0.376963056338593,1.73824320192276,2.04572365864264,2.49345653471472,2.10913641988085,0.203678727700633,0.497627882440372,0.505445516867349,0.210441855886474,0,0,0,0.150704817835715,0,0,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0.348252166522167,0.61734640922383,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0.164167464079095,0,0.292399974850665,0.439100230582101,0.402619256281115,1.68231958851302,0.205809224758569,0,0.528901133327089,0.213288250535234,0,0.128867461322093,0.201683524623343,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,1.25667604400135,0.596869416123452,0.58489226135736,3.59527763461689,1.51296634912286,0.597423819763102,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0.147610147979602,0.156998727841375,0.246794327843601,0.296452627087149,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0,0.162964976442026,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.664394068946325,0.478364305972461,0.327726629431476,0.172684981865896,0.144649058581512,0,0.54390568381871,0.491764273019036,0.275936746304732,1.9266070798535,1.99259867206745,0.327869890753351,0.252470927204373,0.315508219416257,0,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,1.60660658210904,1.27746076687442,0.35613120733451,0.488660878060728,1.31976098378028,0,0,0.302323556964751,0,0.590603785761546,0,0,0,0.712994756769443,1.8962205476149,0,0,0,0,0,0.214337035031592,0,0,0.164549020602121,0.304464949114599,0.938686832254841,1.48282449604674,1.54369878638473,0.65954501176592,0.322928853391811,0.482503399425247,0.358117032009409,0.984845398470368,2.91480836629851,2.78137953015765,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.406638934253697,0.216010681643603,0.209088296014469,1.52853794622324,1.61837215661785,1.57041565878138,2.35580347785627,1.03691978633434,0,0.56369293868419,0,0.165458490457098,0.388902376688095,0.258319646955462,0,0,0.13020438484395,0.734015410979976,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0,0,0.198681354781265,0.240390899039938,0,0,0.0762068066549998,0.100826185136841,0.292373642219257,0,0,0.226730383615211,0.443971906748129,1.88399098879899,1.51096154727671,5.40930863290133,13.8885031833875,1.46521299413812,2.14368379079066,0.501572104035363,2.82375921308533,2.30162618253588,2.29158205375759,3.43706364687375,4.11049511862385,0.755393897389701,1.35004500046361,3.60256962579376,1.35942722695261,3.10656187051092,0,0,0,0,0.209613162627982,0,0.222246727801615,0.412070114477788,0,0.505394423527595,0.25347929989024,0.565879024158229,0.187283014939765,0.256100609619477,0.229741875822453,0,0.115884325944855,0.578727661391115,0,0.147198920134397,0.342869252385415,0,0.238436189947321,0.290692833264657,0.188218760830661,0.169229215783353,0,0.263069711437843,0.271608227691724,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0,0,0,0.463735671240843 | |phase1_expression=0.160148847104794,2.09385244583617,0,0,0,1.00727563147134,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0.639969691173627,1.37645568640302,1.72269589234506,1.29228598847722,0.646413698057667,1.33016393619462,1.76421090831952,2.88249663851896,0,0,0,0.288851619751275,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0.377690453926732,0.405507724878058,0.183546752161682,0,5.66865406589161,7.46933021297204,6.41618666945135,4.19959264876088,8.62515386189829,0,0,0,2.82985379639542,2.29226751951005,1.54701627683233,0,0,0,1.69422266034566,3.55717918444456,0,0,0,5.39280198933128,15.3687322128622,0,0,0,0.285650984403804,1.76694832761291,0.122490799214954,0,0,1.10115880999389,2.55374676170375,2.76491759861238,0,0.0914876436024097,0,2.51264699101243,1.12552522006336,2.59757021220577,0.589257170947335,0.569486723196412,0.186399445825301,0.37863096666592,0.529000920747499,1.15945795480671,0,0,0,0,0,1.12355536105401,4.09032774187339,8.05336614268893,6.71345191569646,0.14084341977668,1.28326477414318,0,0,0.649473123033642,1.01343946190039,1.01104889002957,0.91347103775248,0,0.593768556259299,0.173485326766136,0.608930956624282,0,0.301445281105245,0.23517741427141,0.125666591329675,0.247194967734374,0.578397427679647,0,0.161766849947409,0.220841518460394,0.484875253135222,0,2.63502717310392,2.72280718857492,2.04365644166873,0,0,0,1.3481157546434,7.32000964509802,0.376963056338593,1.73824320192276,2.04572365864264,2.49345653471472,2.10913641988085,0.203678727700633,0.497627882440372,0.505445516867349,0.210441855886474,0,0,0,0.150704817835715,0,0,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0.348252166522167,0.61734640922383,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0.164167464079095,0,0.292399974850665,0.439100230582101,0.402619256281115,1.68231958851302,0.205809224758569,0,0.528901133327089,0.213288250535234,0,0.128867461322093,0.201683524623343,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,1.25667604400135,0.596869416123452,0.58489226135736,3.59527763461689,1.51296634912286,0.597423819763102,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0.147610147979602,0.156998727841375,0.246794327843601,0.296452627087149,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0,0.162964976442026,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.664394068946325,0.478364305972461,0.327726629431476,0.172684981865896,0.144649058581512,0,0.54390568381871,0.491764273019036,0.275936746304732,1.9266070798535,1.99259867206745,0.327869890753351,0.252470927204373,0.315508219416257,0,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,1.60660658210904,1.27746076687442,0.35613120733451,0.488660878060728,1.31976098378028,0,0,0.302323556964751,0,0.590603785761546,0,0,0,0.712994756769443,1.8962205476149,0,0,0,0,0,0.214337035031592,0,0,0.164549020602121,0.304464949114599,0.938686832254841,1.48282449604674,1.54369878638473,0.65954501176592,0.322928853391811,0.482503399425247,0.358117032009409,0.984845398470368,2.91480836629851,2.78137953015765,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.406638934253697,0.216010681643603,0.209088296014469,1.52853794622324,1.61837215661785,1.57041565878138,2.35580347785627,1.03691978633434,0,0.56369293868419,0,0.165458490457098,0.388902376688095,0.258319646955462,0,0,0.13020438484395,0.734015410979976,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0,0,0.198681354781265,0.240390899039938,0,0,0.0762068066549998,0.100826185136841,0.292373642219257,0,0,0.226730383615211,0.443971906748129,1.88399098879899,1.51096154727671,5.40930863290133,13.8885031833875,1.46521299413812,2.14368379079066,0.501572104035363,2.82375921308533,2.30162618253588,2.29158205375759,3.43706364687375,4.11049511862385,0.755393897389701,1.35004500046361,3.60256962579376,1.35942722695261,3.10656187051092,0,0,0,0,0.209613162627982,0,0.222246727801615,0.412070114477788,0,0.505394423527595,0.25347929989024,0.565879024158229,0.187283014939765,0.256100609619477,0.229741875822453,0,0.115884325944855,0.578727661391115,0,0.147198920134397,0.342869252385415,0,0.238436189947321,0.290692833264657,0.188218760830661,0.169229215783353,0,0.263069711437843,0.271608227691724,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0,0,0,0.463735671240843 | ||
|short_description=p3@Dbndd2 | |short_description=p3@Dbndd2 | ||
}} | }} |
Latest revision as of 03:13, 26 September 2015
Short description: | p3@Dbndd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dbndd2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000109349, NM_001048228, uc008nuz.1_5end |
EntrezGene: | Dbndd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 4.78e-09 | 8 |
migratory neural crest cell | 7.06e-07 | 10 |
neuron associated cell | 7.06e-07 | 10 |
glial cell (sensu Vertebrata) | 7.06e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 7.06e-07 | 10 |
glial cell | 7.06e-07 | 10 |
glioblast | 7.06e-07 | 10 |
glioblast (sensu Vertebrata) | 7.06e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.91e-12 | 73 |
regional part of nervous system | 6.57e-12 | 54 |
nervous system | 1.17e-11 | 75 |
brain | 2.27e-11 | 47 |
future brain | 2.27e-11 | 47 |
regional part of brain | 9.58e-11 | 46 |
neural tube | 1.13e-10 | 52 |
neural rod | 1.13e-10 | 52 |
future spinal cord | 1.13e-10 | 52 |
neural keel | 1.13e-10 | 52 |
occipital lobe | 4.03e-09 | 10 |
visual cortex | 4.03e-09 | 10 |
neocortex | 4.03e-09 | 10 |
adult organism | 9.17e-09 | 51 |
regional part of cerebral cortex | 1.12e-08 | 17 |
brain grey matter | 1.14e-08 | 29 |
regional part of telencephalon | 1.14e-08 | 29 |
telencephalon | 1.14e-08 | 29 |
gray matter | 1.15e-07 | 34 |
cerebral cortex | 1.41e-07 | 21 |
cerebral hemisphere | 1.41e-07 | 21 |
pallium | 1.41e-07 | 21 |
anterior neural tube | 1.62e-07 | 40 |
neurectoderm | 2.94e-07 | 64 |
neural plate | 2.94e-07 | 64 |
presumptive neural plate | 2.94e-07 | 64 |
ectoderm-derived structure | 3.75e-07 | 95 |
ectoderm | 3.75e-07 | 95 |
presumptive ectoderm | 3.75e-07 | 95 |
regional part of forebrain | 4.97e-07 | 39 |
forebrain | 4.97e-07 | 39 |
future forebrain | 4.97e-07 | 39 |