FFCP PHASE1:Mm9::chr12:109792880..109792899,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14026 | |EntrezGene=14026 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=425 | |||
|TSSclassifier=NA | |||
|UniProt=P70429,Q6PB99 | |UniProt=P70429,Q6PB99 | ||
|association_with_transcript=-30bp_to_ENSMUST00000021689,ENSMUST00000077735,NM_001163394,NM_007965,uc007ozv.1,uc007ozw.1_5end | |association_with_transcript=-30bp_to_ENSMUST00000021689,ENSMUST00000077735,NM_001163394,NM_007965,uc007ozv.1,uc007ozw.1_5end | ||
|cluster_id=chr12:109792880..109792899,+ | |||
|description=CAGE_peak_6_at_Evl_5end | |description=CAGE_peak_6_at_Evl_5end | ||
|id=chr12:109792880..109792899,+ | |id=chr12:109792880..109792899,+ | ||
|ontology_enrichment_celltype=CL:0000540!8.01e-16!33;CL:0000047!8.01e-16!33;CL:0000031!8.01e-16!33;CL:0000404!8.01e-16!33;CL:0000221!1.23e-13!44;CL:0000133!1.23e-13!44;CL:0002319!1.90e-13!43;CL:0000393!3.83e-13!39;CL:0000211!3.83e-13!39;CL:0000117!7.00e-12!23;CL:0000337!7.00e-12!23;CL:0000055!8.68e-11!50 | |ontology_enrichment_celltype=CL:0000540!8.01e-16!33;CL:0000047!8.01e-16!33;CL:0000031!8.01e-16!33;CL:0000404!8.01e-16!33;CL:0000221!1.23e-13!44;CL:0000133!1.23e-13!44;CL:0002319!1.90e-13!43;CL:0000393!3.83e-13!39;CL:0000211!3.83e-13!39;CL:0000117!7.00e-12!23;CL:0000337!7.00e-12!23;CL:0000055!8.68e-11!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.45e-16,33;CL:0000047,2.45e-16,33;CL:0000031,2.45e-16,33;CL:0000404,2.45e-16,33;CL:0000221,5.67e-14,44;CL:0000133,5.67e-14,44;CL:0002319,8.91e-14,43;CL:0000393,2.55e-13,39;CL:0000211,2.55e-13,39;CL:0000117,2.97e-12,23;CL:0000337,2.97e-12,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.44e-20!73;UBERON:0005743!1.44e-20!73;UBERON:0000073!1.45e-19!75;UBERON:0001016!1.45e-19!75;UBERON:0004121!1.67e-18!102;UBERON:0000924!1.67e-18!102;UBERON:0006601!1.67e-18!102;UBERON:0002346!3.17e-16!71;UBERON:0003075!3.17e-16!71;UBERON:0007284!3.17e-16!71;UBERON:0001049!1.44e-13!52;UBERON:0005068!1.44e-13!52;UBERON:0006241!1.44e-13!52;UBERON:0007135!1.44e-13!52;UBERON:0000033!2.04e-13!63;UBERON:0003056!3.27e-13!49;UBERON:0000955!2.50e-12!50;UBERON:0006238!2.50e-12!50;UBERON:0002616!3.24e-12!49;UBERON:0003080!1.61e-11!40;UBERON:0002780!4.17e-11!39;UBERON:0001890!4.17e-11!39;UBERON:0006240!4.17e-11!39;UBERON:0002020!1.28e-10!34;UBERON:0000468!3.31e-10!333;UBERON:0002791!1.27e-08!29;UBERON:0003528!1.27e-08!29;UBERON:0001893!1.27e-08!29;UBERON:0000153!1.54e-08!94;UBERON:0000922!3.04e-08!328;UBERON:0007811!2.22e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.96e-21,73;UBERON:0001016,4.06e-20,75;UBERON:0004121,6.61e-19,95;UBERON:0000924,6.61e-19,95;UBERON:0006601,6.61e-19,95;UBERON:0002346,3.46e-17,64;UBERON:0003075,3.46e-17,64;UBERON:0007284,3.46e-17,64;UBERON:0010371,4.69e-16,73;UBERON:0010314,6.07e-16,92;UBERON:0000073,9.14e-15,54;UBERON:0001049,5.29e-14,52;UBERON:0005068,5.29e-14,52;UBERON:0006241,5.29e-14,52;UBERON:0007135,5.29e-14,52;UBERON:0003056,1.24e-13,49;UBERON:0000955,5.04e-12,47;UBERON:0006238,5.04e-12,47;UBERON:0002616,6.54e-12,46;UBERON:0003080,7.04e-12,40;UBERON:0002780,1.89e-11,39;UBERON:0001890,1.89e-11,39;UBERON:0006240,1.89e-11,39;UBERON:0002020,6.01e-11,34;UBERON:0000922,5.04e-09,320;UBERON:0003528,7.04e-09,29;UBERON:0002791,7.04e-09,29;UBERON:0001893,7.04e-09,29 | |||
|phase1_expression=5.76535849577258,0,0,0,0,0,0.467225281191051,0,0,0.468129052643987,0,0.0797721589953364,0,0.0874204024189974,0,0,0,0,0,0,1.27564935226605,0.0992909512008853,0,0,0,0,0.430761996159075,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,1.66234645358492,0.408338712524738,0,0,0,0,0,0,1.1330713617802,0.709638518536602,2.38610777810186,10.1710874765245,2.61630187656536,1.09843091367236,1.74986909166855,2.65974201088189,2.87505128729943,0,0,0,1.54355661621568,1.71920063963254,3.6097046459421,14.3644687210314,11.1088105647127,12.0427966666174,6.77689064138264,0.889294796111139,0,0,0,5.69240209984969,3.07374644257244,14.101787273953,13.5005938331691,13.6711224878398,6.85562362569129,5.07997644188711,11.3916443269907,9.29701068876893,13.7882817991503,4.40463523997555,5.61824287574826,5.22262213071228,11.2103344570665,11.2529801630964,8.85552729946492,5.02529398202486,6.75315132038016,4.5839474333043,9.42811473515737,7.68807076315156,8.76077395378913,0.302904773332736,1.5870027622425,0.289864488701678,0,0,0,0,0,0.421333260395256,0.511290967734173,0.779358013808606,0.70667914902068,4.78867627240714,1.28326477414318,2.54805239706646,0,0.216491041011214,1.01343946190039,1.51657333504435,0.5709193985953,0.258937883647172,1.7813056687779,4.3371331691534,4.26251669636998,3.22861696158482,2.41156224884196,4.8211369925639,1.0053327306374,0.741584903203122,0.289198713839823,0,2.58826959915855,0.662524555381181,0.969750506270444,0,3.51336956413857,3.14170060220183,0.510914110417183,0.239630249011841,0,0,7.33974133083631,4.57500602818627,13.9476330845279,4.17178368461463,5.37002460393694,4.36354893575076,3.24482526135515,8.35082783572594,0.746441823660558,1.0108910337347,1.05220927943237,7.026503919986,4.59804208866946,8.64298223065676,5.72678307775717,8.84474488967262,5.76511741281824,6.8402258928602,1.55222022443409,11.6406716183735,9.07709184805532,10.381116325673,5.91828477554452,4.17070873838397,3.1342694986995,1.85203922767149,9.75267907410617,0,0,0,7.24940203874257,5.39409937956521,6.48223421259654,4.97163944728941,3.54175617145327,3.39387648352232,2.79040733700489,4.82892122519315,3.85325629811659,2.30383789878873,1.47750717671186,1.29710095273369,1.16959989940266,1.53685080703735,0.939444931322602,1.68231958851302,12.7601719350313,0,0.264450566663544,9.17139477301506,6.73486348395272,4.51036114627327,3.63030344322017,2.44615848229357,2.66315876557583,0.474529061544512,0.658795818896044,1.75934646160189,0.596869416123452,1.36474860983384,0.898819408654221,0.216138049874694,0.199141273254367,11.3800740571849,7.31190480702264,7.88954149711563,3.66572390121566,3.29719228184964,7.71494018793504,3.60448261608267,0.738050739898011,0.31399745568275,0.863780147452604,0.296452627087149,1.00107063429656,0.982794975566015,0.449724224769707,0.608580364165509,0,0.763877555344259,0.287696137450811,0.324270453550071,0,0,1.11642284300551,0.312037673114561,0,0,0,0.184753190166605,8.33762211790133,8.8001087278694,8.14776411720903,4.69380496577004,4.35516269348721,2.85652369063216,4.29294025287157,3.15270288212382,3.76489972402917,4.46473352240964,0.327726629431476,0.518054945597687,0.433947175744535,0,0,0,2.48343071674259,3.05046120976805,3.16471553798949,3.93443868904021,0.252470927204373,6.94118082715765,7.41833614163613,6.89354872744957,5.4962823529087,6.46116154838943,11.3230612315533,7.2865926301481,7.59865230569411,7.90575555893047,4.17717711348349,2.6968616189571,6.7664929393557,10.750539317336,3.95928295134085,0,5.58395463156457,3.62788268357701,1.69744571780308,2.95301892880773,2.76691633149535,2.58428293168221,2.54473610634254,1.06949213515416,0.316036757935816,0,0,2.04263763452273,4.86164953884538,10.3486947026204,7.71613326113732,10.2857335512519,7.49149033928696,4.60737257685939,8.22055362609418,1.17335854031855,1.48282449604674,1.32317038832977,1.15420377059036,3.71368181400583,3.5584625707612,2.74556391207214,1.47726809770555,0.874442509889552,3.33765543618917,0.170870880797853,7.22354037871279,2.59272338317596,0.565105371014073,0,0.228778173206523,0.169978429993855,0.279902904647316,0,0,10.1227517945963,9.35269548783504,3.56417624711944,2.50905955217362,3.27543845619266,2.56242258131159,2.23164330458407,0.523511883968059,0.777689839750757,0,1.12738587736838,8.97099276263873,7.77654905148359,7.19469396872976,4.77891346867605,7.09615727061268,6.92407708009948,8.07267186032491,7.23529476537405,2.41584120826006,2.59227005632079,0.632022241256357,4.66267995167378,3.90301637226344,2.7283372825337,2.14832034800978,2.98022032171897,1.68273629327956,2.06765338044408,1.11063094942962,2.43861781295999,1.41156659191577,0.877120926657772,1.05833025804362,1.40252282617883,0.906921534460845,1.77588762699252,0.986852422704233,1.51096154727671,1.15913756419314,0.93841237725591,2.19781949120718,1.50057865355346,0.501572104035363,5.64751842617067,2.76195141904306,9.16632821503035,6.01486138202907,3.42541259885321,4.5323633843382,5.40018000185445,5.40385443869065,5.89085131679466,2.07104124700728,7.05753963572401,9.17757208822371,5.80494259564056,7.77941494618541,5.65955539095552,4.96377472815038,4.4449345560323,3.7086310303001,2.24643446714271,4.80124702351215,3.29523089857312,6.41329560712659,3.27745276144588,4.03358460150676,3.84817642002609,3.81034953026459,3.82418275618023,2.70072908649187,4.12085900803307,4.85756436443511,3.77156177623957,3.01708870470874,3.33810665926249,5.0871245821315,3.67026583619789,4.14611578669215,4.024415403201,3.6829759601298,4.07412341537585,3.92799590160417,4.03359061622192,4.33419722452479,4.91077251803627,4.18329471202108,4.05103883060397,6.49507502638659,4.67863216890817,2.79332370262788,4.01705497344571,3.30887128679273,2.31867835620421 | |phase1_expression=5.76535849577258,0,0,0,0,0,0.467225281191051,0,0,0.468129052643987,0,0.0797721589953364,0,0.0874204024189974,0,0,0,0,0,0,1.27564935226605,0.0992909512008853,0,0,0,0,0.430761996159075,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,1.66234645358492,0.408338712524738,0,0,0,0,0,0,1.1330713617802,0.709638518536602,2.38610777810186,10.1710874765245,2.61630187656536,1.09843091367236,1.74986909166855,2.65974201088189,2.87505128729943,0,0,0,1.54355661621568,1.71920063963254,3.6097046459421,14.3644687210314,11.1088105647127,12.0427966666174,6.77689064138264,0.889294796111139,0,0,0,5.69240209984969,3.07374644257244,14.101787273953,13.5005938331691,13.6711224878398,6.85562362569129,5.07997644188711,11.3916443269907,9.29701068876893,13.7882817991503,4.40463523997555,5.61824287574826,5.22262213071228,11.2103344570665,11.2529801630964,8.85552729946492,5.02529398202486,6.75315132038016,4.5839474333043,9.42811473515737,7.68807076315156,8.76077395378913,0.302904773332736,1.5870027622425,0.289864488701678,0,0,0,0,0,0.421333260395256,0.511290967734173,0.779358013808606,0.70667914902068,4.78867627240714,1.28326477414318,2.54805239706646,0,0.216491041011214,1.01343946190039,1.51657333504435,0.5709193985953,0.258937883647172,1.7813056687779,4.3371331691534,4.26251669636998,3.22861696158482,2.41156224884196,4.8211369925639,1.0053327306374,0.741584903203122,0.289198713839823,0,2.58826959915855,0.662524555381181,0.969750506270444,0,3.51336956413857,3.14170060220183,0.510914110417183,0.239630249011841,0,0,7.33974133083631,4.57500602818627,13.9476330845279,4.17178368461463,5.37002460393694,4.36354893575076,3.24482526135515,8.35082783572594,0.746441823660558,1.0108910337347,1.05220927943237,7.026503919986,4.59804208866946,8.64298223065676,5.72678307775717,8.84474488967262,5.76511741281824,6.8402258928602,1.55222022443409,11.6406716183735,9.07709184805532,10.381116325673,5.91828477554452,4.17070873838397,3.1342694986995,1.85203922767149,9.75267907410617,0,0,0,7.24940203874257,5.39409937956521,6.48223421259654,4.97163944728941,3.54175617145327,3.39387648352232,2.79040733700489,4.82892122519315,3.85325629811659,2.30383789878873,1.47750717671186,1.29710095273369,1.16959989940266,1.53685080703735,0.939444931322602,1.68231958851302,12.7601719350313,0,0.264450566663544,9.17139477301506,6.73486348395272,4.51036114627327,3.63030344322017,2.44615848229357,2.66315876557583,0.474529061544512,0.658795818896044,1.75934646160189,0.596869416123452,1.36474860983384,0.898819408654221,0.216138049874694,0.199141273254367,11.3800740571849,7.31190480702264,7.88954149711563,3.66572390121566,3.29719228184964,7.71494018793504,3.60448261608267,0.738050739898011,0.31399745568275,0.863780147452604,0.296452627087149,1.00107063429656,0.982794975566015,0.449724224769707,0.608580364165509,0,0.763877555344259,0.287696137450811,0.324270453550071,0,0,1.11642284300551,0.312037673114561,0,0,0,0.184753190166605,8.33762211790133,8.8001087278694,8.14776411720903,4.69380496577004,4.35516269348721,2.85652369063216,4.29294025287157,3.15270288212382,3.76489972402917,4.46473352240964,0.327726629431476,0.518054945597687,0.433947175744535,0,0,0,2.48343071674259,3.05046120976805,3.16471553798949,3.93443868904021,0.252470927204373,6.94118082715765,7.41833614163613,6.89354872744957,5.4962823529087,6.46116154838943,11.3230612315533,7.2865926301481,7.59865230569411,7.90575555893047,4.17717711348349,2.6968616189571,6.7664929393557,10.750539317336,3.95928295134085,0,5.58395463156457,3.62788268357701,1.69744571780308,2.95301892880773,2.76691633149535,2.58428293168221,2.54473610634254,1.06949213515416,0.316036757935816,0,0,2.04263763452273,4.86164953884538,10.3486947026204,7.71613326113732,10.2857335512519,7.49149033928696,4.60737257685939,8.22055362609418,1.17335854031855,1.48282449604674,1.32317038832977,1.15420377059036,3.71368181400583,3.5584625707612,2.74556391207214,1.47726809770555,0.874442509889552,3.33765543618917,0.170870880797853,7.22354037871279,2.59272338317596,0.565105371014073,0,0.228778173206523,0.169978429993855,0.279902904647316,0,0,10.1227517945963,9.35269548783504,3.56417624711944,2.50905955217362,3.27543845619266,2.56242258131159,2.23164330458407,0.523511883968059,0.777689839750757,0,1.12738587736838,8.97099276263873,7.77654905148359,7.19469396872976,4.77891346867605,7.09615727061268,6.92407708009948,8.07267186032491,7.23529476537405,2.41584120826006,2.59227005632079,0.632022241256357,4.66267995167378,3.90301637226344,2.7283372825337,2.14832034800978,2.98022032171897,1.68273629327956,2.06765338044408,1.11063094942962,2.43861781295999,1.41156659191577,0.877120926657772,1.05833025804362,1.40252282617883,0.906921534460845,1.77588762699252,0.986852422704233,1.51096154727671,1.15913756419314,0.93841237725591,2.19781949120718,1.50057865355346,0.501572104035363,5.64751842617067,2.76195141904306,9.16632821503035,6.01486138202907,3.42541259885321,4.5323633843382,5.40018000185445,5.40385443869065,5.89085131679466,2.07104124700728,7.05753963572401,9.17757208822371,5.80494259564056,7.77941494618541,5.65955539095552,4.96377472815038,4.4449345560323,3.7086310303001,2.24643446714271,4.80124702351215,3.29523089857312,6.41329560712659,3.27745276144588,4.03358460150676,3.84817642002609,3.81034953026459,3.82418275618023,2.70072908649187,4.12085900803307,4.85756436443511,3.77156177623957,3.01708870470874,3.33810665926249,5.0871245821315,3.67026583619789,4.14611578669215,4.024415403201,3.6829759601298,4.07412341537585,3.92799590160417,4.03359061622192,4.33419722452479,4.91077251803627,4.18329471202108,4.05103883060397,6.49507502638659,4.67863216890817,2.79332370262788,4.01705497344571,3.30887128679273,2.31867835620421 | ||
|short_description=p6@Evl | |short_description=p6@Evl | ||
}} | }} |
Latest revision as of 06:56, 26 September 2015
Short description: | p6@Evl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Evl_5end |
Coexpression cluster: | MCL_coexpression_mm9:425 |
Association with transcript: | -30bp_to_ENSMUST00000021689, ENSMUST00000077735, NM_001163394, NM_007965, uc007ozv.1, uc007ozw.1_5end |
EntrezGene: | Evl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.45e-16 | 33 |
neuronal stem cell | 2.45e-16 | 33 |
neuroblast | 2.45e-16 | 33 |
electrically signaling cell | 2.45e-16 | 33 |
ectodermal cell | 5.67e-14 | 44 |
neurectodermal cell | 5.67e-14 | 44 |
neural cell | 8.91e-14 | 43 |
electrically responsive cell | 2.55e-13 | 39 |
electrically active cell | 2.55e-13 | 39 |
CNS neuron (sensu Vertebrata) | 2.97e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.97e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.96e-21 | 73 |
nervous system | 4.06e-20 | 75 |
ectoderm-derived structure | 6.61e-19 | 95 |
ectoderm | 6.61e-19 | 95 |
presumptive ectoderm | 6.61e-19 | 95 |
neurectoderm | 3.46e-17 | 64 |
neural plate | 3.46e-17 | 64 |
presumptive neural plate | 3.46e-17 | 64 |
ecto-epithelium | 4.69e-16 | 73 |
structure with developmental contribution from neural crest | 6.07e-16 | 92 |
regional part of nervous system | 9.14e-15 | 54 |
neural tube | 5.29e-14 | 52 |
neural rod | 5.29e-14 | 52 |
future spinal cord | 5.29e-14 | 52 |
neural keel | 5.29e-14 | 52 |
pre-chordal neural plate | 1.24e-13 | 49 |
brain | 5.04e-12 | 47 |
future brain | 5.04e-12 | 47 |
regional part of brain | 6.54e-12 | 46 |
anterior neural tube | 7.04e-12 | 40 |
regional part of forebrain | 1.89e-11 | 39 |
forebrain | 1.89e-11 | 39 |
future forebrain | 1.89e-11 | 39 |
gray matter | 6.01e-11 | 34 |
embryo | 5.04e-09 | 320 |
brain grey matter | 7.04e-09 | 29 |
regional part of telencephalon | 7.04e-09 | 29 |
telencephalon | 7.04e-09 | 29 |