FFCP PHASE1:Mm9::chr7:17199897..17199955,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=232906 | |EntrezGene=232906 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=321 | |||
|TSSclassifier=NA | |||
|UniProt=Q91YM2,B2RTN5,Q3UVZ8,Q8CCL8 | |UniProt=Q91YM2,B2RTN5,Q3UVZ8,Q8CCL8 | ||
|association_with_transcript=386bp_to_ENSMUST00000075845,NM_172739,uc009fhw.1_5end | |association_with_transcript=386bp_to_ENSMUST00000075845,NM_172739,uc009fhw.1_5end | ||
|cluster_id=chr7:17199897..17199955,- | |||
|description=CAGE_peak_1_at_Grlf1_5end | |description=CAGE_peak_1_at_Grlf1_5end | ||
|id=chr7:17199897..17199955,- | |id=chr7:17199897..17199955,- | ||
|ontology_enrichment_celltype=CL:0000393!5.80e-17!39;CL:0000211!5.80e-17!39;CL:0000540!1.05e-15!33;CL:0000047!1.05e-15!33;CL:0000031!1.05e-15!33;CL:0000404!1.05e-15!33;CL:0000055!2.52e-15!50;CL:0000221!3.03e-14!44;CL:0000133!3.03e-14!44;CL:0002319!4.09e-14!43;CL:0000117!3.73e-11!23;CL:0000337!3.73e-11!23;CL:0002321!1.83e-08!70;CL:0000220!1.83e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.71e-17,39;CL:0000211,5.71e-17,39;CL:0000540,1.03e-15,33;CL:0000047,1.03e-15,33;CL:0000031,1.03e-15,33;CL:0000404,1.03e-15,33;CL:0000221,2.99e-14,44;CL:0000133,2.99e-14,44;CL:0002319,4.04e-14,43;CL:0000117,3.70e-11,23;CL:0000337,3.70e-11,23;CL:0002321,1.68e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.21e-21!73;UBERON:0005743!1.21e-21!73;UBERON:0000073!5.51e-21!75;UBERON:0001016!5.51e-21!75;UBERON:0004121!7.28e-18!102;UBERON:0000924!7.28e-18!102;UBERON:0006601!7.28e-18!102;UBERON:0002346!1.70e-16!71;UBERON:0003075!1.70e-16!71;UBERON:0007284!1.70e-16!71;UBERON:0000025!4.67e-15!114;UBERON:0001049!5.43e-15!52;UBERON:0005068!5.43e-15!52;UBERON:0006241!5.43e-15!52;UBERON:0007135!5.43e-15!52;UBERON:0002020!1.11e-13!34;UBERON:0003056!4.11e-13!49;UBERON:0004111!5.64e-13!122;UBERON:0000033!7.92e-13!63;UBERON:0000955!8.69e-13!50;UBERON:0006238!8.69e-13!50;UBERON:0002616!9.03e-13!49;UBERON:0002780!4.89e-12!39;UBERON:0001890!4.89e-12!39;UBERON:0006240!4.89e-12!39;UBERON:0003080!6.54e-12!40;UBERON:0002791!7.89e-11!29;UBERON:0003528!7.89e-11!29;UBERON:0001893!7.89e-11!29;UBERON:0000956!1.60e-09!21;UBERON:0001869!1.60e-09!21;UBERON:0000203!1.60e-09!21;UBERON:0000153!3.45e-08!94;UBERON:0002619!1.25e-07!17;UBERON:0000468!1.91e-07!333;UBERON:0007811!3.11e-07!86;UBERON:0000922!6.38e-07!328;UBERON:0000477!6.42e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-21,73;UBERON:0001016,5.40e-21,75;UBERON:0010314,1.40e-19,92;UBERON:0004121,1.06e-18,95;UBERON:0000924,1.06e-18,95;UBERON:0006601,1.06e-18,95;UBERON:0002346,7.47e-18,64;UBERON:0003075,7.47e-18,64;UBERON:0007284,7.47e-18,64;UBERON:0000073,1.43e-15,54;UBERON:0010371,3.31e-15,73;UBERON:0000025,4.61e-15,114;UBERON:0001049,5.36e-15,52;UBERON:0005068,5.36e-15,52;UBERON:0006241,5.36e-15,52;UBERON:0007135,5.36e-15,52;UBERON:0002020,1.10e-13,34;UBERON:0003056,4.06e-13,49;UBERON:0004111,5.81e-13,122;UBERON:0000955,4.04e-12,47;UBERON:0006238,4.04e-12,47;UBERON:0002616,4.17e-12,46;UBERON:0002780,4.84e-12,39;UBERON:0001890,4.84e-12,39;UBERON:0006240,4.84e-12,39;UBERON:0003080,6.47e-12,40;UBERON:0003528,7.81e-11,29;UBERON:0002791,7.81e-11,29;UBERON:0001893,7.81e-11,29;UBERON:0000956,1.58e-09,21;UBERON:0001869,1.58e-09,21;UBERON:0000203,1.58e-09,21;UBERON:0000922,3.98e-08,320;UBERON:0002619,1.24e-07,17 | |||
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|phase1_expression=10.890121603126,2.44282785347553,4.09499315450582,0,0,3.18970616632591,2.10251376535973,4.39019299701359,10.4183654392233,9.83071010552373,1.54096171402954,2.55270908785077,2.39681021903688,1.74840804837995,1.66554880907831,0.809901069559304,0,2.05050407482854,1.37114433605739,0.42438965179803,8.33424243480484,2.78014663362479,1.82839852397255,3.03985603307473,2.75291137280604,5.16808767703518,3.4460959692726,3.66301095566011,0.190023419456374,0.504060259519861,2.21730510655305,0,0,0,0.577703239502549,1.66234645358492,1.42918549383658,0,0,0.523523743973798,0,0,0,14.3522372492158,15.9161782014638,12.4811791469943,17.2126095756569,8.06693078607652,10.9843091367236,25.0814569805826,13.8586557409109,8.62515386189829,1.34226084846189,2.90144856804538,2.68875039313971,12.3484529297255,15.4728057566929,15.4701627683233,20.4339625468194,28.0365219014177,25.9870875437533,17.6199156675949,14.2287167377782,0.899899717281399,1.97773272513395,0.7104801149461,5.09320187881288,9.22123932771731,24.4707485048007,27.0011876663381,27.9732198597338,21.4238238302853,23.6329338818226,35.1548593746918,39.3924885884951,30.3342199581307,15.4162233399144,12.5133591323484,14.2854075928306,22.0250100509424,25.6165402086747,25.0038417867245,9.21303896704557,10.6924895906019,11.7654650788144,24.7488011797881,28.3319644790215,22.5543329448614,5.14938114665652,10.2777321745228,7.24661221754194,9.46466264679525,2.719885334831,10.2543606411185,14.2950811838487,13.4408066129201,3.93244376368905,13.1231348385104,9.35229616570328,9.18682893726885,12.8167511996779,28.2318250311499,30.5766287647975,14.2213340630666,2.16491041011214,1.52015919285059,3.0331466700887,5.36664234679582,3.6251303710604,7.42210695324124,13.7053408145247,8.52503339273995,10.6083128737787,6.17962826265753,9.05433044944927,7.28866229712118,12.1125534189843,5.35017620603673,0,6.30890714794896,5.52103796150984,6.30337829075789,1.86391761218122,10.8328894894272,12.3573557019938,0.766371165625774,1.67741174308288,1.19980546198682,0.762421362438388,10.4853447583376,7.77751024791665,27.6439574648302,13.210648334613,14.3200656104985,12.8828587626927,17.6842976743856,7.73979165262404,4.60305791257344,1.51633655060205,3.36706969418358,17.3060189140396,15.8632452059096,17.6460887209242,14.6183673300644,13.2671173345089,15.6298738747517,13.6804517857204,8.53721123438752,23.9280472155455,25.15110866232,20.762232651346,16.6588756644957,8.34141747676794,8.70630416305416,10.2891068203972,17.5150154800274,0.702213187313235,0.772043721344145,0.852490498186778,11.5990432619881,13.6025114789036,10.2635375032778,12.7842157216014,11.6090896730968,14.9639099500757,17.672579801031,14.7550370769791,13.778310399326,19.9117418395311,14.1184019108022,15.159867385075,10.8187990694746,10.5384055339704,7.51555945058082,16.4026159880019,25.4174392576833,0,0.528901133327089,17.4896365438892,15.5598570146494,10.4382643670896,7.05892336181699,5.33707305227689,3.61428689613862,2.37264530772256,3.45867804920423,3.77002813200404,3.78017296878187,5.06906626509712,4.49409704327111,1.08069024937347,2.19055400579804,11.3800740571849,14.3953125888258,15.7790829942313,10.7935203758017,12.8008641530633,10.3801013437671,13.0899631847213,12.5468625782662,9.57692239832386,10.6121560972748,8.59712618552732,6.34011401721157,3.53806191203765,4.49724224769707,4.66578279193557,5.30589751455317,5.60176873919124,8.34318798607351,2.43202840162553,3.0201755450689,10.0637744569148,4.09355042435354,8.11297950097858,7.32478746046624,5.74071723270119,7.71909634181387,8.86815312799702,16.6752442358027,19.8817271259272,19.6904299499218,19.9486711045227,15.0755631697634,17.139142143793,14.6350235893349,15.9211495547253,14.8381342064679,17.8589340896386,8.68475567993411,12.0879487306127,6.50920763616802,0,0.54390568381871,2.45882136509518,3.86311444826625,9.63303539926752,15.1203075703942,9.50822683184717,3.28212205365685,18.9304931649754,21.0836921920185,20.2497993868831,24.6137861891129,18.4922899488387,23.2122755246843,21.0501564870945,20.4579100537918,26.0889933444706,11.5675673911851,15.329529202493,7.83488656135923,6.35259141478947,13.1976098378028,3.98235415019888,11.1679092631291,6.04647113929502,4.52652191414155,3.83892460745005,3.07435147943927,6.97756391554197,3.99887102425256,8.55593708123331,5.68866164284469,1.05418608574999,2.06271086496374,5.44703369206061,16.3855595568492,12.2890749593617,22.2910516432856,18.9754049997233,12.8425548673491,12.3411765451591,8.52501857520878,3.05073220482823,3.60114520468494,2.64634077665954,6.26567761177624,6.94297034792394,9.95163261314572,6.56547892017251,7.38634048852776,2.62332752966866,12.6089205367147,2.05045056957423,12.3832120777933,7.9633646768976,1.31857919903284,2.05041341581538,2.0590035588587,0.679913719975421,1.39951452323658,1.79659965945751,2.86401185404534,15.8167996790568,11.1825706919767,8.96444328820951,8.99079672862215,5.67742665740062,6.06889558731693,5.95104881222419,3.66458318777641,2.20345454596048,0.621339313086926,2.81846469342095,17.19440279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| ||
|short_description=p1@Grlf1 | |short_description=p1@Grlf1 | ||
}} | }} |
Latest revision as of 07:07, 26 September 2015
Short description: | p1@Grlf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Grlf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:321 |
Association with transcript: | 386bp_to_ENSMUST00000075845, NM_172739, uc009fhw.1_5end |
EntrezGene: | Grlf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.71e-17 | 39 |
electrically active cell | 5.71e-17 | 39 |
neuron | 1.03e-15 | 33 |
neuronal stem cell | 1.03e-15 | 33 |
neuroblast | 1.03e-15 | 33 |
electrically signaling cell | 1.03e-15 | 33 |
ectodermal cell | 2.99e-14 | 44 |
neurectodermal cell | 2.99e-14 | 44 |
neural cell | 4.04e-14 | 43 |
CNS neuron (sensu Vertebrata) | 3.70e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.70e-11 | 23 |
embryonic cell | 1.68e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.19e-21 | 73 |
nervous system | 5.40e-21 | 75 |
structure with developmental contribution from neural crest | 1.40e-19 | 92 |
ectoderm-derived structure | 1.06e-18 | 95 |
ectoderm | 1.06e-18 | 95 |
presumptive ectoderm | 1.06e-18 | 95 |
neurectoderm | 7.47e-18 | 64 |
neural plate | 7.47e-18 | 64 |
presumptive neural plate | 7.47e-18 | 64 |
regional part of nervous system | 1.43e-15 | 54 |
ecto-epithelium | 3.31e-15 | 73 |
tube | 4.61e-15 | 114 |
neural tube | 5.36e-15 | 52 |
neural rod | 5.36e-15 | 52 |
future spinal cord | 5.36e-15 | 52 |
neural keel | 5.36e-15 | 52 |
gray matter | 1.10e-13 | 34 |
pre-chordal neural plate | 4.06e-13 | 49 |
anatomical conduit | 5.81e-13 | 122 |
brain | 4.04e-12 | 47 |
future brain | 4.04e-12 | 47 |
regional part of brain | 4.17e-12 | 46 |
regional part of forebrain | 4.84e-12 | 39 |
forebrain | 4.84e-12 | 39 |
future forebrain | 4.84e-12 | 39 |
anterior neural tube | 6.47e-12 | 40 |
brain grey matter | 7.81e-11 | 29 |
regional part of telencephalon | 7.81e-11 | 29 |
telencephalon | 7.81e-11 | 29 |
cerebral cortex | 1.58e-09 | 21 |
cerebral hemisphere | 1.58e-09 | 21 |
pallium | 1.58e-09 | 21 |
embryo | 3.98e-08 | 320 |
regional part of cerebral cortex | 1.24e-07 | 17 |