FFCP PHASE1:Mm9::chr1:164408077..164408132,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=103967 | |EntrezGene=103967 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=10bp_to_ENSMUST00000161155_5end | |association_with_transcript=10bp_to_ENSMUST00000161155_5end | ||
|cluster_id=chr1:164408077..164408132,- | |||
|description=CAGE_peak_1_at_Dnm3_5end | |description=CAGE_peak_1_at_Dnm3_5end | ||
|id=chr1:164408077..164408132,- | |id=chr1:164408077..164408132,- | ||
|ontology_enrichment_celltype=CL:0000540!7.92e-13!33;CL:0000047!7.92e-13!33;CL:0000031!7.92e-13!33;CL:0000404!7.92e-13!33;CL:0000117!4.36e-12!23;CL:0000337!4.36e-12!23;CL:0000221!5.80e-10!44;CL:0000133!5.80e-10!44;CL:0002319!8.47e-10!43;CL:0000393!4.27e-08!39;CL:0000211!4.27e-08!39 | |ontology_enrichment_celltype=CL:0000540!7.92e-13!33;CL:0000047!7.92e-13!33;CL:0000031!7.92e-13!33;CL:0000404!7.92e-13!33;CL:0000117!4.36e-12!23;CL:0000337!4.36e-12!23;CL:0000221!5.80e-10!44;CL:0000133!5.80e-10!44;CL:0002319!8.47e-10!43;CL:0000393!4.27e-08!39;CL:0000211!4.27e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.48e-13,33;CL:0000047,5.48e-13,33;CL:0000031,5.48e-13,33;CL:0000404,5.48e-13,33;CL:0000117,3.09e-12,23;CL:0000337,3.09e-12,23;CL:0000221,4.41e-10,44;CL:0000133,4.41e-10,44;CL:0002319,6.47e-10,43;CL:0000393,2.13e-08,39;CL:0000211,2.13e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.14e-25!102;UBERON:0000924!5.14e-25!102;UBERON:0006601!5.14e-25!102;UBERON:0001017!1.76e-23!73;UBERON:0005743!1.76e-23!73;UBERON:0000073!4.85e-23!75;UBERON:0001016!4.85e-23!75;UBERON:0002346!1.64e-21!71;UBERON:0003075!1.64e-21!71;UBERON:0007284!1.64e-21!71;UBERON:0000033!3.21e-19!63;UBERON:0001049!1.13e-18!52;UBERON:0005068!1.13e-18!52;UBERON:0006241!1.13e-18!52;UBERON:0007135!1.13e-18!52;UBERON:0000955!9.35e-18!50;UBERON:0006238!9.35e-18!50;UBERON:0002616!3.94e-17!49;UBERON:0002020!3.37e-15!34;UBERON:0003056!8.24e-15!49;UBERON:0003080!4.23e-13!40;UBERON:0002780!1.90e-12!39;UBERON:0001890!1.90e-12!39;UBERON:0006240!1.90e-12!39;UBERON:0002791!2.04e-12!29;UBERON:0003528!2.04e-12!29;UBERON:0001893!2.04e-12!29;UBERON:0000468!1.29e-10!333;UBERON:0000956!4.22e-08!21;UBERON:0001869!4.22e-08!21;UBERON:0000203!4.22e-08!21;UBERON:0000922!1.05e-07!328;UBERON:0002619!5.94e-07!17;UBERON:0002021!9.06e-07!10;UBERON:0000411!9.06e-07!10;UBERON:0001950!9.06e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.08e-24,95;UBERON:0000924,2.08e-24,95;UBERON:0006601,2.08e-24,95;UBERON:0001017,8.57e-24,73;UBERON:0001016,2.40e-23,75;UBERON:0002346,2.93e-21,64;UBERON:0003075,2.93e-21,64;UBERON:0007284,2.93e-21,64;UBERON:0010371,2.54e-20,73;UBERON:0000073,2.67e-20,54;UBERON:0001049,6.46e-19,52;UBERON:0005068,6.46e-19,52;UBERON:0006241,6.46e-19,52;UBERON:0007135,6.46e-19,52;UBERON:0010314,1.21e-16,92;UBERON:0000955,6.07e-16,47;UBERON:0006238,6.07e-16,47;UBERON:0002020,2.16e-15,34;UBERON:0002616,2.50e-15,46;UBERON:0003056,5.35e-15,49;UBERON:0003080,2.90e-13,40;UBERON:0002780,1.33e-12,39;UBERON:0001890,1.33e-12,39;UBERON:0006240,1.33e-12,39;UBERON:0003528,1.43e-12,29;UBERON:0002791,1.43e-12,29;UBERON:0001893,1.43e-12,29;UBERON:0000956,3.41e-08,21;UBERON:0001869,3.41e-08,21;UBERON:0000203,3.41e-08,21;UBERON:0002619,4.98e-07,17;UBERON:0002021,7.63e-07,10;UBERON:0000411,7.63e-07,10;UBERON:0001950,7.63e-07,10 | |||
|phase1_expression=12.3314612270691,1.04692622291808,1.36499771816861,0.60492842261366,1.50268718983904,0.503637815735669,0,0,0,0,0,0,0,0,0,0.404950534779652,0,0,0.137114433605739,0,39.034870179341,0,0,0,0,1.72269589234506,0,0,0,1.00812051903972,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,2.34717403304412,8.28495594245697,1.09843091367236,2.13872888981712,5.17949760013841,2.87505128729943,0,0,0,1.02903774414379,1.43266719969378,0,62.5157864056157,58.7179986991957,53.2418378945191,1.0165335962074,1.77858959222228,0,0,0.7104801149461,4.19440154725767,7.68436610643109,17.5235444801327,17.1457541681247,18.2982716375702,68.8418872413167,56.7632150245647,20.5784542681123,20.0317034428114,20.2228133054205,136.543692439242,172.888655767344,175.879480578399,55.2603545589512,65.1392022449157,62.5096044668112,122.561336561606,115.929097666526,126.364150911422,94.2811473515737,93.9653093274079,90.5901306710961,1.81742863999642,11.638020256445,37.3925190425164,0,0,1.61910957491345,0.649776417447669,0.896053774194671,5.61777680527007,0,0,0,15.0702459161048,0,0,0,0,0,0,5.25245846707676,11.3932668804756,27.9071221441871,5.20455980298408,6.08930956624282,9.4552353874984,11.9070886036572,14.6985883919631,12.3153259503082,11.8653584512499,5.49477556295664,0.884610551949874,3.23533699894818,5.07935492458905,6.78825354389311,1.86391761218122,160.736657559339,139.910400151388,1.53274233125155,0.11981512450592,0,0.127070227073065,186.489346059004,123.982663363848,51.2669756620487,100.122808430751,90.523271894937,165.39928346941,128.657321612732,4.07357455401265,5.10068579501381,2.52722758433675,45.0345571597054,1.69156575851515,5.9774547152703,7.92273371143537,14.1662528765572,29.3917676333736,37.537320043461,41.3224605308404,122.884101101032,0.431135985865684,3.02569728268511,3.34307135911503,1.53437012699302,6.95118123063995,5.2237824978325,6.99659263787008,2.58744546864041,0,0,0,0.828503090142008,0.234526059981096,0.900310307305074,0.473489471170421,1.37734962223183,3.5481435964097,2.32533944750408,3.75582761959467,7.23945122676451,5.59503489705834,6.7308660272429,17.9162069096341,11.9883989688773,11.8557062257167,23.7545361205858,62.0355348264175,37.7659927431974,1.98251269790279,1.85115396664481,1.91959425481711,5.34144345279009,5.41243337552792,6.45387278794696,9.33987784148455,8.3699275489526,4.74529061544512,10.0466362381647,7.03738584640755,5.96869416123452,7.60359939764569,7.19055526923377,3.6743468478698,6.37252074413975,1.13800740571849,5.36968009265725,11.270773567308,12.8300336542548,11.8311017172252,15.640287835541,29.4049897627796,36.4597065509617,32.4987366631646,31.8364682918245,1.48226313543574,0.500535317148282,3.14494392181125,4.49724224769707,4.46292267054706,3.37648023653384,4.83789118384698,1.15078454980324,0.324270453550071,0.549122826376163,2.87536413054709,1.11642284300551,2.18426371180192,2.27320990152401,1.07638448113147,0.964887042726734,12.1937105509959,0.947457058852424,3.91115943460862,1.86719594352707,2.34690248288502,3.1826188913945,3.57065461329021,5.46374214001837,9.61574379047765,8.41565820665345,11.0023790373666,11.7981586595331,12.9513736399422,12.729117155173,0,0,5.90117127622843,3.58717770196152,185.114830255924,171.480697484393,0,12.3710754330143,14.8288863125641,10.5418460960092,17.0184484208911,4.06246956519338,8.68914828921337,8.49229592366497,35.6233417473907,26.8875389278407,28.4607200121497,114.390388646163,18.3102709918667,2.13678724400706,6.8412522928502,16.4970122972535,3.98235415019888,2.18502572539483,0.906970670894253,1.32023555829129,2.06711325016541,4.61152721915891,5.94385074286909,7.27067458955011,6.41695281092498,5.05658812697306,4.21674434299995,3.09406629744561,58.2151725838977,3.78128297465751,1.29358683782755,3.42939256050548,5.32020700926821,9.0968096977056,10.6956863391379,13.0919928119278,2.3467170806371,2.54198485036584,5.07215315526412,15.4993077764991,8.55761461488299,3.73940134554566,2.74556391207214,5.0883678920969,6.12109756922687,189.875509258762,0.854354403989263,1.44470807574256,3.51869602002452,1.13021074202815,0.683471138605126,1.60144721244566,0.339956859987711,0.69975726161829,0.138199973804424,0.954670618015114,1.89801596148681,5.89626454667861,4.53622431451565,4.80903080833278,4.58561383866973,3.2367443132357,4.62859352061881,3.14107130380836,3.24037433229482,1.24267862617385,42.2769704013143,5.23307911153926,4.30192075188454,6.61134040369762,7.36210993823067,10.644235905919,10.0927225235348,5.85919731797776,21.1815875739936,53.6316748233733,53.2855511577051,0.948033361884535,1.01362607645082,0.924398614483445,0.909445760844565,0.716106782669926,0.596044064343795,0.721172697119813,0.738447635872886,1.41353029927407,0.838274873204998,0.201652370273681,0.487289403698762,0.577271049841977,0.233753804363138,8.38902419376282,0,0.179427713218951,0,10.8186172658027,7.50729901804728,19.4140721723301,7.71726164684637,8.52672576860118,72.2882358549845,74.5726883141627,65.3100885320912,50.5248356090442,68.5082519770642,90.6472676867641,88.4279475303666,92.3158466609652,99.2381875675408,104.069822662116,2.49089634202024,5.1873233542134,10.9269507682646,13.6139761558245,16.5594398476106,15.0751676929012,20.6689456855502,20.3974706666505,18.9342333659171,18.9522908822848,17.4900716924265,21.3147765766266,16.6681883296391,19.3996211786754,19.6429303828197,14.7651044297753,19.4685667587357,18.7121943849794,18.1317796353455,21.1966444993532,24.0008476669791,15.9728225543404,19.313331385733,16.8601843293501,20.6099543109574,19.884432854544,20.3050049888778,18.1518100892112,19.2841841661124,20.7622640513363,16.9648075917569,16.9427709685969,18.8246279858057,18.7473577835019,15.2396222675102,22.982573170291,15.9073493742878,17.6194264319605,9.56441660344217,10.3677966986172,9.97031693167812 | |phase1_expression=12.3314612270691,1.04692622291808,1.36499771816861,0.60492842261366,1.50268718983904,0.503637815735669,0,0,0,0,0,0,0,0,0,0.404950534779652,0,0,0.137114433605739,0,39.034870179341,0,0,0,0,1.72269589234506,0,0,0,1.00812051903972,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,2.34717403304412,8.28495594245697,1.09843091367236,2.13872888981712,5.17949760013841,2.87505128729943,0,0,0,1.02903774414379,1.43266719969378,0,62.5157864056157,58.7179986991957,53.2418378945191,1.0165335962074,1.77858959222228,0,0,0.7104801149461,4.19440154725767,7.68436610643109,17.5235444801327,17.1457541681247,18.2982716375702,68.8418872413167,56.7632150245647,20.5784542681123,20.0317034428114,20.2228133054205,136.543692439242,172.888655767344,175.879480578399,55.2603545589512,65.1392022449157,62.5096044668112,122.561336561606,115.929097666526,126.364150911422,94.2811473515737,93.9653093274079,90.5901306710961,1.81742863999642,11.638020256445,37.3925190425164,0,0,1.61910957491345,0.649776417447669,0.896053774194671,5.61777680527007,0,0,0,15.0702459161048,0,0,0,0,0,0,5.25245846707676,11.3932668804756,27.9071221441871,5.20455980298408,6.08930956624282,9.4552353874984,11.9070886036572,14.6985883919631,12.3153259503082,11.8653584512499,5.49477556295664,0.884610551949874,3.23533699894818,5.07935492458905,6.78825354389311,1.86391761218122,160.736657559339,139.910400151388,1.53274233125155,0.11981512450592,0,0.127070227073065,186.489346059004,123.982663363848,51.2669756620487,100.122808430751,90.523271894937,165.39928346941,128.657321612732,4.07357455401265,5.10068579501381,2.52722758433675,45.0345571597054,1.69156575851515,5.9774547152703,7.92273371143537,14.1662528765572,29.3917676333736,37.537320043461,41.3224605308404,122.884101101032,0.431135985865684,3.02569728268511,3.34307135911503,1.53437012699302,6.95118123063995,5.2237824978325,6.99659263787008,2.58744546864041,0,0,0,0.828503090142008,0.234526059981096,0.900310307305074,0.473489471170421,1.37734962223183,3.5481435964097,2.32533944750408,3.75582761959467,7.23945122676451,5.59503489705834,6.7308660272429,17.9162069096341,11.9883989688773,11.8557062257167,23.7545361205858,62.0355348264175,37.7659927431974,1.98251269790279,1.85115396664481,1.91959425481711,5.34144345279009,5.41243337552792,6.45387278794696,9.33987784148455,8.3699275489526,4.74529061544512,10.0466362381647,7.03738584640755,5.96869416123452,7.60359939764569,7.19055526923377,3.6743468478698,6.37252074413975,1.13800740571849,5.36968009265725,11.270773567308,12.8300336542548,11.8311017172252,15.640287835541,29.4049897627796,36.4597065509617,32.4987366631646,31.8364682918245,1.48226313543574,0.500535317148282,3.14494392181125,4.49724224769707,4.46292267054706,3.37648023653384,4.83789118384698,1.15078454980324,0.324270453550071,0.549122826376163,2.87536413054709,1.11642284300551,2.18426371180192,2.27320990152401,1.07638448113147,0.964887042726734,12.1937105509959,0.947457058852424,3.91115943460862,1.86719594352707,2.34690248288502,3.1826188913945,3.57065461329021,5.46374214001837,9.61574379047765,8.41565820665345,11.0023790373666,11.7981586595331,12.9513736399422,12.729117155173,0,0,5.90117127622843,3.58717770196152,185.114830255924,171.480697484393,0,12.3710754330143,14.8288863125641,10.5418460960092,17.0184484208911,4.06246956519338,8.68914828921337,8.49229592366497,35.6233417473907,26.8875389278407,28.4607200121497,114.390388646163,18.3102709918667,2.13678724400706,6.8412522928502,16.4970122972535,3.98235415019888,2.18502572539483,0.906970670894253,1.32023555829129,2.06711325016541,4.61152721915891,5.94385074286909,7.27067458955011,6.41695281092498,5.05658812697306,4.21674434299995,3.09406629744561,58.2151725838977,3.78128297465751,1.29358683782755,3.42939256050548,5.32020700926821,9.0968096977056,10.6956863391379,13.0919928119278,2.3467170806371,2.54198485036584,5.07215315526412,15.4993077764991,8.55761461488299,3.73940134554566,2.74556391207214,5.0883678920969,6.12109756922687,189.875509258762,0.854354403989263,1.44470807574256,3.51869602002452,1.13021074202815,0.683471138605126,1.60144721244566,0.339956859987711,0.69975726161829,0.138199973804424,0.954670618015114,1.89801596148681,5.89626454667861,4.53622431451565,4.80903080833278,4.58561383866973,3.2367443132357,4.62859352061881,3.14107130380836,3.24037433229482,1.24267862617385,42.2769704013143,5.23307911153926,4.30192075188454,6.61134040369762,7.36210993823067,10.644235905919,10.0927225235348,5.85919731797776,21.1815875739936,53.6316748233733,53.2855511577051,0.948033361884535,1.01362607645082,0.924398614483445,0.909445760844565,0.716106782669926,0.596044064343795,0.721172697119813,0.738447635872886,1.41353029927407,0.838274873204998,0.201652370273681,0.487289403698762,0.577271049841977,0.233753804363138,8.38902419376282,0,0.179427713218951,0,10.8186172658027,7.50729901804728,19.4140721723301,7.71726164684637,8.52672576860118,72.2882358549845,74.5726883141627,65.3100885320912,50.5248356090442,68.5082519770642,90.6472676867641,88.4279475303666,92.3158466609652,99.2381875675408,104.069822662116,2.49089634202024,5.1873233542134,10.9269507682646,13.6139761558245,16.5594398476106,15.0751676929012,20.6689456855502,20.3974706666505,18.9342333659171,18.9522908822848,17.4900716924265,21.3147765766266,16.6681883296391,19.3996211786754,19.6429303828197,14.7651044297753,19.4685667587357,18.7121943849794,18.1317796353455,21.1966444993532,24.0008476669791,15.9728225543404,19.313331385733,16.8601843293501,20.6099543109574,19.884432854544,20.3050049888778,18.1518100892112,19.2841841661124,20.7622640513363,16.9648075917569,16.9427709685969,18.8246279858057,18.7473577835019,15.2396222675102,22.982573170291,15.9073493742878,17.6194264319605,9.56441660344217,10.3677966986172,9.97031693167812 | ||
|short_description=p1@Dnm3 | |short_description=p1@Dnm3 | ||
}} | }} |
Latest revision as of 16:15, 26 September 2015
Short description: | p1@Dnm3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnm3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 10bp_to_ENSMUST00000161155_5end |
EntrezGene: | Dnm3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.48e-13 | 33 |
neuronal stem cell | 5.48e-13 | 33 |
neuroblast | 5.48e-13 | 33 |
electrically signaling cell | 5.48e-13 | 33 |
CNS neuron (sensu Vertebrata) | 3.09e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.09e-12 | 23 |
ectodermal cell | 4.41e-10 | 44 |
neurectodermal cell | 4.41e-10 | 44 |
neural cell | 6.47e-10 | 43 |
electrically responsive cell | 2.13e-08 | 39 |
electrically active cell | 2.13e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.08e-24 | 95 |
ectoderm | 2.08e-24 | 95 |
presumptive ectoderm | 2.08e-24 | 95 |
central nervous system | 8.57e-24 | 73 |
nervous system | 2.40e-23 | 75 |
neurectoderm | 2.93e-21 | 64 |
neural plate | 2.93e-21 | 64 |
presumptive neural plate | 2.93e-21 | 64 |
ecto-epithelium | 2.54e-20 | 73 |
regional part of nervous system | 2.67e-20 | 54 |
neural tube | 6.46e-19 | 52 |
neural rod | 6.46e-19 | 52 |
future spinal cord | 6.46e-19 | 52 |
neural keel | 6.46e-19 | 52 |
structure with developmental contribution from neural crest | 1.21e-16 | 92 |
brain | 6.07e-16 | 47 |
future brain | 6.07e-16 | 47 |
gray matter | 2.16e-15 | 34 |
regional part of brain | 2.50e-15 | 46 |
pre-chordal neural plate | 5.35e-15 | 49 |
anterior neural tube | 2.90e-13 | 40 |
regional part of forebrain | 1.33e-12 | 39 |
forebrain | 1.33e-12 | 39 |
future forebrain | 1.33e-12 | 39 |
brain grey matter | 1.43e-12 | 29 |
regional part of telencephalon | 1.43e-12 | 29 |
telencephalon | 1.43e-12 | 29 |
cerebral cortex | 3.41e-08 | 21 |
cerebral hemisphere | 3.41e-08 | 21 |
pallium | 3.41e-08 | 21 |
regional part of cerebral cortex | 4.98e-07 | 17 |
occipital lobe | 7.63e-07 | 10 |
visual cortex | 7.63e-07 | 10 |
neocortex | 7.63e-07 | 10 |