FFCP PHASE1:Mm9::chr7:53493918..53493927,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72088 | |EntrezGene=72088 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=E9QMN1 | |UniProt=E9QMN1 | ||
|association_with_transcript=-45bp_to_ENSMUST00000009667_5end | |association_with_transcript=-45bp_to_ENSMUST00000009667_5end | ||
|cluster_id=chr7:53493918..53493927,- | |||
|description=CAGE_peak_3_at_Ush1c_5end | |description=CAGE_peak_3_at_Ush1c_5end | ||
|id=chr7:53493918..53493927,- | |id=chr7:53493918..53493927,- | ||
|ontology_enrichment_celltype=CL:0002563!1.61e-08!9;CL:0002251!1.61e-08!9;CL:0000075!2.83e-07!7 | |ontology_enrichment_celltype=CL:0002563!1.61e-08!9;CL:0002251!1.61e-08!9;CL:0000075!2.83e-07!7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.40e-12,9;CL:0002251,2.40e-12,9;CL:0000075,2.02e-10,7;CL:0000239,2.34e-09,6;CL:0000677,2.34e-09,6;CL:0000584,2.34e-09,6;CL:0000066,2.03e-08,25 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.71e-24!43;UBERON:0005409!1.22e-19!59;UBERON:0000344!1.07e-13!15;UBERON:0001242!4.63e-12!13;UBERON:0000060!4.63e-12!13;UBERON:0001262!4.63e-12!13;UBERON:0004786!4.63e-12!13;UBERON:0000485!9.19e-10!11;UBERON:0003350!1.61e-08!9;UBERON:0004808!1.61e-08!9;UBERON:0001277!1.61e-08!9;UBERON:0004923!4.67e-08!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.97e-35,31;UBERON:0005409,1.84e-24,47;UBERON:0000344,2.26e-20,15;UBERON:0001242,7.86e-18,13;UBERON:0001262,7.86e-18,13;UBERON:0004786,7.86e-18,13;UBERON:0000485,2.86e-14,11;UBERON:0004923,2.07e-12,24;UBERON:0003350,2.40e-12,9;UBERON:0004808,2.40e-12,9;UBERON:0001277,2.40e-12,9;UBERON:0002108,7.17e-07,4 | |||
|phase1_expression=2.24208385946712,23.7303277194766,16.3799726180233,13.9133537201142,15.0268718983904,12.4230661214798,13.5495331545405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,14.7193028969934,12.6175104586944,18.3754228516806,13.7843838770904,15.9448712187558,19.5724122040065,17.3900789534352,11.0865255327652,0,0,0,6.64358725427932,5.15327400611326,4.49172583777212,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,6.90132756905734,0,0,0,0,0,0,4.11061966988616,0,0,0,0.304465478312141,0,0,0,0.125666591329675,1.48316980640624,0,0,0,0,0,5.59175283654366,0,0,17.3710797541842,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0,0,0,0,0,0,0.272145996605311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414251545071004,0.469052119962192,0.540186184383045,0.710234206755631,0.787056926989615,0.462801338662135,1.62773761325285,1.07309360559848,1.40118410840603,1.48103864922132,0.985004784474571,0.810688095458557,1.02339991197733,0.658650345873152,0.939444931322602,0,0,18.8338706300765,16.6603856998033,0.213288250535234,0.928946687441754,4.12375876230699,5.84882221407693,12.008414367623,16.7398550979052,8.54152310780121,12.8465184684728,14.8287773192159,14.3248659869629,14.2323783596958,10.7858329038507,11.8875927431082,12.1476176685164,0.189667900953082,0.571242563048644,2.25415471346161,2.8511185898344,3.49114476901726,3.99774173374816,4.61626721007078,5.46157547524528,5.80895293013087,4.81248939295022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,1.21390318077491,0.604647113929502,0.565815239267694,1.18120757152309,0.307435147943927,4.13485269069154,1.09060118843252,0.712994756769443,0,0,0,4.08527526904546,0,0,0,0.709360934569094,1.42695054081656,0.822745103010605,0.608929898229199,0.469343416127421,0,0,0,0,0,0,0,14.8655226681224,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.627264888043406,1.31017538247707,0.134864346384821,0.330613822901344,0,9.20266310371729,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0.44449345560323,0.412070114477788,1.28367683836726,1.01078884705519,1.01391719956096,0.565879024158229,0.936415074698824,0.640251524048693,0.689225627467359,0,0.695305955669133,0.964546102318525,0.824171801606613,1.47198920134397,0.342869252385415,1.06485483695602,0.715308569841963,1.0174249164263,0.658765662907314,1.09998990259179,1.46342378298218,0.526139422875686,0.950628796921032,1.68342681497322,0.711810108745045,1.0835493061312,0.409231043169689,0.77468420592983,0.771626443924566,0,0.233931608445408,1.50409737833809,0,0,0 | |phase1_expression=2.24208385946712,23.7303277194766,16.3799726180233,13.9133537201142,15.0268718983904,12.4230661214798,13.5495331545405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,14.7193028969934,12.6175104586944,18.3754228516806,13.7843838770904,15.9448712187558,19.5724122040065,17.3900789534352,11.0865255327652,0,0,0,6.64358725427932,5.15327400611326,4.49172583777212,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,6.90132756905734,0,0,0,0,0,0,4.11061966988616,0,0,0,0.304465478312141,0,0,0,0.125666591329675,1.48316980640624,0,0,0,0,0,5.59175283654366,0,0,17.3710797541842,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0,0,0,0,0,0,0.272145996605311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414251545071004,0.469052119962192,0.540186184383045,0.710234206755631,0.787056926989615,0.462801338662135,1.62773761325285,1.07309360559848,1.40118410840603,1.48103864922132,0.985004784474571,0.810688095458557,1.02339991197733,0.658650345873152,0.939444931322602,0,0,18.8338706300765,16.6603856998033,0.213288250535234,0.928946687441754,4.12375876230699,5.84882221407693,12.008414367623,16.7398550979052,8.54152310780121,12.8465184684728,14.8287773192159,14.3248659869629,14.2323783596958,10.7858329038507,11.8875927431082,12.1476176685164,0.189667900953082,0.571242563048644,2.25415471346161,2.8511185898344,3.49114476901726,3.99774173374816,4.61626721007078,5.46157547524528,5.80895293013087,4.81248939295022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,1.21390318077491,0.604647113929502,0.565815239267694,1.18120757152309,0.307435147943927,4.13485269069154,1.09060118843252,0.712994756769443,0,0,0,4.08527526904546,0,0,0,0.709360934569094,1.42695054081656,0.822745103010605,0.608929898229199,0.469343416127421,0,0,0,0,0,0,0,14.8655226681224,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.627264888043406,1.31017538247707,0.134864346384821,0.330613822901344,0,9.20266310371729,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0.44449345560323,0.412070114477788,1.28367683836726,1.01078884705519,1.01391719956096,0.565879024158229,0.936415074698824,0.640251524048693,0.689225627467359,0,0.695305955669133,0.964546102318525,0.824171801606613,1.47198920134397,0.342869252385415,1.06485483695602,0.715308569841963,1.0174249164263,0.658765662907314,1.09998990259179,1.46342378298218,0.526139422875686,0.950628796921032,1.68342681497322,0.711810108745045,1.0835493061312,0.409231043169689,0.77468420592983,0.771626443924566,0,0.233931608445408,1.50409737833809,0,0,0 | ||
|short_description=p3@Ush1c | |short_description=p3@Ush1c | ||
}} | }} |
Latest revision as of 22:18, 26 September 2015
Short description: | p3@Ush1c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ush1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -45bp_to_ENSMUST00000009667_5end |
EntrezGene: | Ush1c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.40e-12 | 9 |
epithelial cell of alimentary canal | 2.40e-12 | 9 |
columnar/cuboidal epithelial cell | 2.02e-10 | 7 |
brush border epithelial cell | 2.34e-09 | 6 |
gut absorptive cell | 2.34e-09 | 6 |
enterocyte | 2.34e-09 | 6 |
epithelial cell | 2.03e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.97e-35 | 31 |
gastrointestinal system | 1.84e-24 | 47 |
mucosa | 2.26e-20 | 15 |
intestinal mucosa | 7.86e-18 | 13 |
wall of intestine | 7.86e-18 | 13 |
gastrointestinal system mucosa | 7.86e-18 | 13 |
simple columnar epithelium | 2.86e-14 | 11 |
organ component layer | 2.07e-12 | 24 |
epithelium of mucosa | 2.40e-12 | 9 |
gastrointestinal system epithelium | 2.40e-12 | 9 |
intestinal epithelium | 2.40e-12 | 9 |
small intestine | 7.17e-07 | 4 |