FFCP PHASE1:Mm9::chr4:86503216..86503253,-: Difference between revisions
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{{FFCP|EntrezGene=20104,639593,667739|HGNC=|MCL_coexpression_id=910|UniProt=|association_with_transcript=0bp_to_ENSMUST00000130001,ENSMUST00000136174_5end|description=CAGE_peak_2_at_Gm13654_5end,CAGE_peak_2_at_LOC639593_5end,CAGE_peak_2_at_Rps6_5end|id=chr4:86503216..86503253,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.44e-12!52;UBERON:0005068!8.44e-12!52;UBERON:0006241!8.44e-12!52;UBERON:0007135!8.44e-12!52;UBERON:0002346!2.19e-11!71;UBERON:0003075!2.19e-11!71;UBERON:0007284!2.19e-11!71;UBERON:0003080!2.32e-11!40;UBERON:0002780!6.78e-11!39;UBERON:0001890!6.78e-11!39;UBERON:0006240!6.78e-11!39;UBERON:0002616!9.68e-11!49;UBERON:0000955!1.92e-10!50;UBERON:0006238!1.92e-10!50;UBERON:0001017!5.39e-10!73;UBERON:0005743!5.39e-10!73;UBERON:0000073!5.95e-10!75;UBERON:0001016!5.95e-10!75;UBERON:0003056!8.47e-09!49;UBERON:0002020!1.89e-08!34;UBERON:0000033!3.57e-08!63;UBERON:0004121!3.77e-08!102;UBERON:0000924!3.77e-08!102;UBERON:0006601!3.77e-08!102;UBERON:0002021!6.93e-08!10;UBERON:0000411!6.93e-08!10;UBERON:0001950!6.93e-08!10;UBERON:0002791!1.25e-07!29;UBERON:0003528!1.25e-07!29;UBERON:0001893!1.25e-07!29;UBERON:0000475!8.07e-07!200;UBERON:0000153!9.49e-07!94;UBERON:0007811!9.62e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.25e-11,52;UBERON:0005068,1.25e-11,52;UBERON:0006241,1.25e-11,52;UBERON:0007135,1.25e-11,52;UBERON:0000073,1.69e-11,54;UBERON:0003080,3.28e-11,40;UBERON:0002780,9.58e-11,39;UBERON:0001890,9.58e-11,39;UBERON:0006240,9.58e-11,39;UBERON:0002616,2.44e-10,46;UBERON:0000955,4.91e-10,47;UBERON:0006238,4.91e-10,47;UBERON:0001017,4.95e-10,73;UBERON:0001016,5.47e-10,75;UBERON:0002346,7.74e-10,64;UBERON:0003075,7.74e-10,64;UBERON:0007284,7.74e-10,64;UBERON:0010371,5.41e-09,73;UBERON:0003056,1.20e-08,49;UBERON:0002020,2.64e-08,34;UBERON:0002021,6.40e-08,10;UBERON:0000411,6.40e-08,10;UBERON:0001950,6.40e-08,10;UBERON:0003528,1.78e-07,29;UBERON:0002791,1.78e-07,29;UBERON:0001893,1.78e-07,29;UBERON:0004121,7.81e-07,95;UBERON:0000924,7.81e-07,95;UBERON:0006601,7.81e-07,95|phase1_expression=4.80446541314382,0,0.909998478779072,0.30246421130683,1.00179145989269,1.00727563147134,1.16806320297763,2.58246646883153,14.0788722151667,10.2988391581677,6.8487187290202,5.98291192465023,2.05440875917447,0.961624426608971,1.33243904726265,1.82227740650843,0.699561878128147,1.10411757875383,1.91960207048034,2.12194825899015,1.44573593256819,2.6808556824239,0.783599367416806,0.639969691173627,0,0.57423196411502,0.86152399231815,1.07735616342945,0.760093677825496,0.756090389279792,2.66076612786366,3.17515336729816,6.1506478758457,0,2.02196133825892,2.1610503896604,1.83752420636132,0.837063261473815,0,0,1.17646297606203,0.683045484958446,1.45653105909346,2.89562681343828,2.93993100536592,2.56965453026354,0.782391344348039,1.09012578190223,1.97717564461025,0.972149495371417,0.419959264876088,1.43752564364972,4.19456515144341,5.07753499407941,2.01656279485478,1.54355661621568,2.0057340795713,2.06268836910977,3.84401275633236,1.5869729378161,0.633831403506179,1.0165335962074,0.889294796111139,0.899899717281399,2.96659908770092,0.7104801149461,0.599200221036809,0.384218305321555,0.829516898467821,1.75507719831198,1.68259969081106,1.99955689082663,3.3130281142742,1.22490799214954,1.53352753629178,1.83843757322004,1.10115880999389,3.70293280447044,3.68655679814984,2.90149833006426,2.28719109006024,3.12548022334056,4.4669279840221,5.06486349028512,3.97275444219706,2.35702868378934,3.84403538157578,2.79599168737951,3.93776205332557,1.058001841495,3.18850937571846,3.44169550792555,1.3599426674155,0.539703191637817,0.649776417447669,0.448026887097336,1.12355536105401,1.02258193546835,1.55871602761721,0.35333957451034,3.66192891419369,0,0,0,3.030874574157,4.81383744402687,2.52762222507392,0.45673551887624,2.33044095282455,3.11728492036132,3.99016251562112,2.13125834818499,3.22861696158482,3.01445281105245,1.64624189989987,3.01599819191221,1.73036477414062,0.578397427679647,1.76922110389975,1.61766849947409,2.42925670306433,1.45462575940567,0,1.46390398505774,2.30391377494801,1.27728527604296,2.03685711660064,2.39961092397363,2.1601938602421,4.04434726393021,5.49000723382352,3.64397621127307,9.73416193076748,13.2972037811772,5.40248915854856,6.81413304884582,1.73126918545538,1.7416975885413,2.0217820674694,1.05220927943237,1.56144531555244,1.83921683546778,2.88099407688559,1.50704817835715,1.63287597963187,2.0498195245576,1.78033276663485,0.776110112217047,3.66465587985832,1.70195472151037,4.57472922826267,2.41115305670332,1.94633074457919,0.348252166522167,1.23469281844766,3.18454826909589,0.702213187313235,1.80143534980301,3.12579849335152,1.65700618028402,3.04883877975425,1.08037236876609,2.13070262026689,1.37734962223183,0.617068451549513,0.930135779001631,1.07309360559848,1.40118410840603,0.822799249567402,0.656669856316381,0.56748166682099,1.02339991197733,1.53685080703735,0.13420641876037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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20104,639593,667739 | |||
|HGNC= | |||
|MCL_coexpression_id=910 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000130001,ENSMUST00000136174_5end | |||
|cluster_id=chr4:86503216..86503253,- | |||
|description=CAGE_peak_2_at_Gm13654_5end,CAGE_peak_2_at_LOC639593_5end,CAGE_peak_2_at_Rps6_5end | |||
|id=chr4:86503216..86503253,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.44e-12!52;UBERON:0005068!8.44e-12!52;UBERON:0006241!8.44e-12!52;UBERON:0007135!8.44e-12!52;UBERON:0002346!2.19e-11!71;UBERON:0003075!2.19e-11!71;UBERON:0007284!2.19e-11!71;UBERON:0003080!2.32e-11!40;UBERON:0002780!6.78e-11!39;UBERON:0001890!6.78e-11!39;UBERON:0006240!6.78e-11!39;UBERON:0002616!9.68e-11!49;UBERON:0000955!1.92e-10!50;UBERON:0006238!1.92e-10!50;UBERON:0001017!5.39e-10!73;UBERON:0005743!5.39e-10!73;UBERON:0000073!5.95e-10!75;UBERON:0001016!5.95e-10!75;UBERON:0003056!8.47e-09!49;UBERON:0002020!1.89e-08!34;UBERON:0000033!3.57e-08!63;UBERON:0004121!3.77e-08!102;UBERON:0000924!3.77e-08!102;UBERON:0006601!3.77e-08!102;UBERON:0002021!6.93e-08!10;UBERON:0000411!6.93e-08!10;UBERON:0001950!6.93e-08!10;UBERON:0002791!1.25e-07!29;UBERON:0003528!1.25e-07!29;UBERON:0001893!1.25e-07!29;UBERON:0000475!8.07e-07!200;UBERON:0000153!9.49e-07!94;UBERON:0007811!9.62e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.25e-11,52;UBERON:0005068,1.25e-11,52;UBERON:0006241,1.25e-11,52;UBERON:0007135,1.25e-11,52;UBERON:0000073,1.69e-11,54;UBERON:0003080,3.28e-11,40;UBERON:0002780,9.58e-11,39;UBERON:0001890,9.58e-11,39;UBERON:0006240,9.58e-11,39;UBERON:0002616,2.44e-10,46;UBERON:0000955,4.91e-10,47;UBERON:0006238,4.91e-10,47;UBERON:0001017,4.95e-10,73;UBERON:0001016,5.47e-10,75;UBERON:0002346,7.74e-10,64;UBERON:0003075,7.74e-10,64;UBERON:0007284,7.74e-10,64;UBERON:0010371,5.41e-09,73;UBERON:0003056,1.20e-08,49;UBERON:0002020,2.64e-08,34;UBERON:0002021,6.40e-08,10;UBERON:0000411,6.40e-08,10;UBERON:0001950,6.40e-08,10;UBERON:0003528,1.78e-07,29;UBERON:0002791,1.78e-07,29;UBERON:0001893,1.78e-07,29;UBERON:0004121,7.81e-07,95;UBERON:0000924,7.81e-07,95;UBERON:0006601,7.81e-07,95 | |||
|phase1_expression=4.80446541314382,0,0.909998478779072,0.30246421130683,1.00179145989269,1.00727563147134,1.16806320297763,2.58246646883153,14.0788722151667,10.2988391581677,6.8487187290202,5.98291192465023,2.05440875917447,0.961624426608971,1.33243904726265,1.82227740650843,0.699561878128147,1.10411757875383,1.91960207048034,2.12194825899015,1.44573593256819,2.6808556824239,0.783599367416806,0.639969691173627,0,0.57423196411502,0.86152399231815,1.07735616342945,0.760093677825496,0.756090389279792,2.66076612786366,3.17515336729816,6.1506478758457,0,2.02196133825892,2.1610503896604,1.83752420636132,0.837063261473815,0,0,1.17646297606203,0.683045484958446,1.45653105909346,2.89562681343828,2.93993100536592,2.56965453026354,0.782391344348039,1.09012578190223,1.97717564461025,0.972149495371417,0.419959264876088,1.43752564364972,4.19456515144341,5.07753499407941,2.01656279485478,1.54355661621568,2.0057340795713,2.06268836910977,3.84401275633236,1.5869729378161,0.633831403506179,1.0165335962074,0.889294796111139,0.899899717281399,2.96659908770092,0.7104801149461,0.599200221036809,0.384218305321555,0.829516898467821,1.75507719831198,1.68259969081106,1.99955689082663,3.3130281142742,1.22490799214954,1.53352753629178,1.83843757322004,1.10115880999389,3.70293280447044,3.68655679814984,2.90149833006426,2.28719109006024,3.12548022334056,4.4669279840221,5.06486349028512,3.97275444219706,2.35702868378934,3.84403538157578,2.79599168737951,3.93776205332557,1.058001841495,3.18850937571846,3.44169550792555,1.3599426674155,0.539703191637817,0.649776417447669,0.448026887097336,1.12355536105401,1.02258193546835,1.55871602761721,0.35333957451034,3.66192891419369,0,0,0,3.030874574157,4.81383744402687,2.52762222507392,0.45673551887624,2.33044095282455,3.11728492036132,3.99016251562112,2.13125834818499,3.22861696158482,3.01445281105245,1.64624189989987,3.01599819191221,1.73036477414062,0.578397427679647,1.76922110389975,1.61766849947409,2.42925670306433,1.45462575940567,0,1.46390398505774,2.30391377494801,1.27728527604296,2.03685711660064,2.39961092397363,2.1601938602421,4.04434726393021,5.49000723382352,3.64397621127307,9.73416193076748,13.2972037811772,5.40248915854856,6.81413304884582,1.73126918545538,1.7416975885413,2.0217820674694,1.05220927943237,1.56144531555244,1.83921683546778,2.88099407688559,1.50704817835715,1.63287597963187,2.0498195245576,1.78033276663485,0.776110112217047,3.66465587985832,1.70195472151037,4.57472922826267,2.41115305670332,1.94633074457919,0.348252166522167,1.23469281844766,3.18454826909589,0.702213187313235,1.80143534980301,3.12579849335152,1.65700618028402,3.04883877975425,1.08037236876609,2.13070262026689,1.37734962223183,0.617068451549513,0.930135779001631,1.07309360559848,1.40118410840603,0.822799249567402,0.656669856316381,0.56748166682099,1.02339991197733,1.53685080703735,0.134206418760372,10.0939175310781,3.80747065803352,0.660837565967596,1.85115396664481,3.19932375802851,2.78684006232526,1.15980715189884,1.00841762311671,1.77902435075896,1.33157938278791,0.949058123089023,1.64698954724011,1.25667604400135,1.59165177632921,0.974820435595601,0.898819408654221,0.864552199498777,1.59313018603494,4.93136542478012,2.85621281524322,2.25415471346161,2.03651327845314,1.93952487167626,2.52488951605147,1.58091342810643,0.442830443938806,0.941992367048249,2.09775178667061,0.889357881261447,2.50267658574141,3.73462090715086,2.69834534861824,1.21716072833102,1.20588579876208,1.78238096246994,2.30156909960649,1.29708181420028,1.92192989231657,1.43768206527355,1.11642284300551,1.24815069245824,0.505157755894224,1.61457672169721,2.8946611281802,0.739012760666419,3.41084541186873,2.11854469374634,1.35796068620151,3.05097322775053,1.00503754465089,1.19021820443007,4.09780660501378,0.788175720530955,1.7717175171902,2.71073106717728,1.3109065177259,0.863424909329478,1.01254341007058,1.50791283939272,0.54390568381871,0.983528546038072,0.827810238914197,4.81651769963376,4.80567915028033,7.54100748732707,1.26235463602186,2.83957397474631,2.73307121007647,2.15423397732799,2.38968797952552,2.00518806674155,1.98153571552183,2.42886421004937,2.63030272120181,2.76701444562566,1.60660658210904,0.709700426041343,2.13678724400706,2.44330439030364,1.31976098378028,2.65490276679926,2.91336763385978,2.41858845571801,3.01768127609437,2.06711325016541,3.3817866273832,1.80899805217755,3.63533729477506,3.92147116223193,3.16036757935816,1.05418608574999,2.06271086496374,3.74483566329167,2.52085531643834,4.13947788104814,2.57204442037911,3.3694644392032,2.31879462882692,2.96188237083818,4.87143918583359,1.40803024838226,2.33015277950202,2.8668691747145,1.81374878235628,1.77610869365496,2.53314284698255,2.14870219205646,1.14898629821543,0.874442509889552,3.52308073819968,1.02522528478712,4.33412422722767,2.59272338317596,1.50694765603753,1.77702496037333,1.60144721244566,2.37969801991397,2.93898049879682,2.48759952847963,2.86401185404534,3.32152793260192,2.43983360552218,2.48412283890143,1.04544148007234,0.655087691238533,2.292693888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| |||
|short_description=p2@Gm13654,p2@LOC639593,p2@Rps6 | |||
}} |
Latest revision as of 06:28, 27 September 2015
Short description: | p2@Gm13654, p2@LOC639593, p2@Rps6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gm13654_5end, CAGE_peak_2_at_LOC639593_5end, CAGE_peak_2_at_Rps6_5end |
Coexpression cluster: | MCL_coexpression_mm9:910 |
Association with transcript: | 0bp_to_ENSMUST00000130001, ENSMUST00000136174_5end |
EntrezGene: | 20104,639593,667739 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.25e-11 | 52 |
neural rod | 1.25e-11 | 52 |
future spinal cord | 1.25e-11 | 52 |
neural keel | 1.25e-11 | 52 |
regional part of nervous system | 1.69e-11 | 54 |
anterior neural tube | 3.28e-11 | 40 |
regional part of forebrain | 9.58e-11 | 39 |
forebrain | 9.58e-11 | 39 |
future forebrain | 9.58e-11 | 39 |
regional part of brain | 2.44e-10 | 46 |
brain | 4.91e-10 | 47 |
future brain | 4.91e-10 | 47 |
central nervous system | 4.95e-10 | 73 |
nervous system | 5.47e-10 | 75 |
neurectoderm | 7.74e-10 | 64 |
neural plate | 7.74e-10 | 64 |
presumptive neural plate | 7.74e-10 | 64 |
ecto-epithelium | 5.41e-09 | 73 |
pre-chordal neural plate | 1.20e-08 | 49 |
gray matter | 2.64e-08 | 34 |
occipital lobe | 6.40e-08 | 10 |
visual cortex | 6.40e-08 | 10 |
neocortex | 6.40e-08 | 10 |
brain grey matter | 1.78e-07 | 29 |
regional part of telencephalon | 1.78e-07 | 29 |
telencephalon | 1.78e-07 | 29 |
ectoderm-derived structure | 7.81e-07 | 95 |
ectoderm | 7.81e-07 | 95 |
presumptive ectoderm | 7.81e-07 | 95 |