FFCP PHASE1:Mm9::chrX:140098908..140098942,+: Difference between revisions
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{{FFCP|EntrezGene=18481|HGNC=|MCL_coexpression_id=87|UniProt=A3KGC2,A3KGC3|association_with_transcript=0bp_to_ENSMUST00000126592,ENSMUST00000156449_5end|description=CAGE_peak_1_at_Pak3_5end|id=chrX:140098908..140098942,+|ontology_enrichment_celltype=CL:0000393!4.92e-14!39;CL:0000211!4.92e-14!39;CL:0000117!9.33e-14!23;CL:0000337!9.33e-14!23;CL:0000540!1.03e-12!33;CL:0000047!1.03e-12!33;CL:0000031!1.03e-12!33;CL:0000404!1.03e-12!33;CL:0000055!7.97e-10!50;CL:0002319!3.76e-09!43;CL:0000221!5.20e-09!44;CL:0000133!5.20e-09!44|ontology_enrichment_celltype_v019_2=CL:0000393,1.13e-14,39;CL:0000211,1.13e-14,39;CL:0000117,2.21e-14,23;CL:0000337,2.21e-14,23;CL:0000540,2.75e-13,33;CL:0000047,2.75e-13,33;CL:0000031,2.75e-13,33;CL:0000404,2.75e-13,33;CL:0002319,1.04e-09,43;CL:0000221,1.47e-09,44;CL:0000133,1.47e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.18e-24!71;UBERON:0003075!1.18e-24!71;UBERON:0007284!1.18e-24!71;UBERON:0004121!1.00e-21!102;UBERON:0000924!1.00e-21!102;UBERON:0006601!1.00e-21!102;UBERON:0001017!2.95e-21!73;UBERON:0005743!2.95e-21!73;UBERON:0000073!5.48e-21!75;UBERON:0001016!5.48e-21!75;UBERON:0001049!1.66e-19!52;UBERON:0005068!1.66e-19!52;UBERON:0006241!1.66e-19!52;UBERON:0007135!1.66e-19!52;UBERON:0003056!2.24e-19!49;UBERON:0000033!4.10e-19!63;UBERON:0000955!1.15e-17!50;UBERON:0006238!1.15e-17!50;UBERON:0002616!1.81e-17!49;UBERON:0002020!1.28e-16!34;UBERON:0003080!5.05e-16!40;UBERON:0002780!2.17e-15!39;UBERON:0001890!2.17e-15!39;UBERON:0006240!2.17e-15!39;UBERON:0002791!2.92e-13!29;UBERON:0003528!2.92e-13!29;UBERON:0001893!2.92e-13!29;UBERON:0007811!3.86e-10!86;UBERON:0000153!5.00e-10!94;UBERON:0000468!1.23e-09!333;UBERON:0000956!7.16e-09!21;UBERON:0001869!7.16e-09!21;UBERON:0000203!7.16e-09!21;UBERON:0002619!2.21e-07!17;UBERON:0000922!3.64e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.93e-25,64;UBERON:0003075,6.93e-25,64;UBERON:0007284,6.93e-25,64;UBERON:0001017,1.74e-22,73;UBERON:0001016,3.38e-22,75;UBERON:0000073,4.44e-22,54;UBERON:0010371,1.89e-21,73;UBERON:0004121,2.11e-21,95;UBERON:0000924,2.11e-21,95;UBERON:0006601,2.11e-21,95;UBERON:0001049,1.30e-20,52;UBERON:0005068,1.30e-20,52;UBERON:0006241,1.30e-20,52;UBERON:0007135,1.30e-20,52;UBERON:0010314,2.05e-20,92;UBERON:0003056,2.72e-20,49;UBERON:0002020,2.15e-17,34;UBERON:0000955,9.06e-17,47;UBERON:0006238,9.06e-17,47;UBERON:0003080,9.14e-17,40;UBERON:0002616,1.46e-16,46;UBERON:0002780,4.24e-16,39;UBERON:0001890,4.24e-16,39;UBERON:0006240,4.24e-16,39;UBERON:0003528,7.32e-14,29;UBERON:0002791,7.32e-14,29;UBERON:0001893,7.32e-14,29;UBERON:0000956,3.01e-09,21;UBERON:0001869,3.01e-09,21;UBERON:0000203,3.01e-09,21;UBERON:0002619,1.11e-07,17|phase1_expression=2.7225304007815,0,0,0,0,1.00727563147134,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2257142999412,0,0,0.47997726838022,0.45881856213434,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,43.182608565623,36.1915644453667,55.7982126571512,0,5.66865406589161,1.5378032791413,3.30530828426282,1.39986421625363,0,0,0,0,5.40244815675489,1.71920063963254,3.6097046459421,38.8447604850428,46.5512061759389,28.5224131577781,0.338844532069132,0,0,0,0,0.299600110518405,2.68952813725088,23.1227835447905,18.4958135514416,20.8221711737868,37.9915809257059,39.977205912242,37.6046753589909,24.4405951096503,14.7075005857603,42.9451935897616,32.9433332259784,43.9314685112856,38.3789097294864,35.4057180741325,41.152156273984,25.4056529091257,49.5231096827878,48.5898427930256,107.834062283362,103.931326983345,65.6126049305058,1.66597625333005,4.45872204630035,1.44932244350839,0,0,0,0.649776417447669,0,2.52799956237153,1.1930122580464,0.519572009205738,0.35333957451034,2.39433813620357,3.84979432242953,12.7402619853323,0,2.81438353314578,3.29367825117628,3.0331466700887,1.94112595522402,0,27.6102378660574,7.45986905094384,5.48037860961854,5.07354093963329,7.68685466818375,12.8171690777918,6.91166252313215,0,0.722996784599558,0,4.36770494858005,1.32504911076236,1.45462575940567,0,2.63502717310392,5.65506108396329,0.510914110417183,0,0,0,43.1397041485889,25.1625331550245,28.774846633846,27.4642425903797,24.8043993610421,37.6096360652804,31.7992875612805,1.83310854930569,0.622034853050465,0.505445516867349,6.52369753248069,5.59517904739626,11.4951052216736,18.546399369951,21.8521985861787,36.6716730425657,53.5515350790672,53.8784916218441,24.8355235909455,1.5089759505299,4.72765200419548,6.33424046990216,6.79506770525482,5.56094498451196,5.57203466435466,4.32142486456681,5.9710280045548,0,0,0,3.10688658803253,3.04883877975425,1.62055855314913,3.31442629819294,4.13204886669548,2.46827380619805,3.48800917125612,4.56064782379353,4.43708300995244,2.13927804887525,1.64167464079095,0.324275238183423,0.584799949701329,0.878200461164203,0.134206418760372,26.49653351908,24.0796792967526,0.330418782983798,0.264450566663544,2.13288250535234,4.64473343720877,2.19074684247559,2.21851877085677,4.00280478920767,2.47293313946327,0.474529061544512,0.9881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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18481 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=A3KGC2,A3KGC3 | |||
|association_with_transcript=0bp_to_ENSMUST00000126592,ENSMUST00000156449_5end | |||
|cluster_id=chrX:140098908..140098942,+ | |||
|description=CAGE_peak_1_at_Pak3_5end | |||
|id=chrX:140098908..140098942,+ | |||
|ontology_enrichment_celltype=CL:0000393!4.92e-14!39;CL:0000211!4.92e-14!39;CL:0000117!9.33e-14!23;CL:0000337!9.33e-14!23;CL:0000540!1.03e-12!33;CL:0000047!1.03e-12!33;CL:0000031!1.03e-12!33;CL:0000404!1.03e-12!33;CL:0000055!7.97e-10!50;CL:0002319!3.76e-09!43;CL:0000221!5.20e-09!44;CL:0000133!5.20e-09!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.13e-14,39;CL:0000211,1.13e-14,39;CL:0000117,2.21e-14,23;CL:0000337,2.21e-14,23;CL:0000540,2.75e-13,33;CL:0000047,2.75e-13,33;CL:0000031,2.75e-13,33;CL:0000404,2.75e-13,33;CL:0002319,1.04e-09,43;CL:0000221,1.47e-09,44;CL:0000133,1.47e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.18e-24!71;UBERON:0003075!1.18e-24!71;UBERON:0007284!1.18e-24!71;UBERON:0004121!1.00e-21!102;UBERON:0000924!1.00e-21!102;UBERON:0006601!1.00e-21!102;UBERON:0001017!2.95e-21!73;UBERON:0005743!2.95e-21!73;UBERON:0000073!5.48e-21!75;UBERON:0001016!5.48e-21!75;UBERON:0001049!1.66e-19!52;UBERON:0005068!1.66e-19!52;UBERON:0006241!1.66e-19!52;UBERON:0007135!1.66e-19!52;UBERON:0003056!2.24e-19!49;UBERON:0000033!4.10e-19!63;UBERON:0000955!1.15e-17!50;UBERON:0006238!1.15e-17!50;UBERON:0002616!1.81e-17!49;UBERON:0002020!1.28e-16!34;UBERON:0003080!5.05e-16!40;UBERON:0002780!2.17e-15!39;UBERON:0001890!2.17e-15!39;UBERON:0006240!2.17e-15!39;UBERON:0002791!2.92e-13!29;UBERON:0003528!2.92e-13!29;UBERON:0001893!2.92e-13!29;UBERON:0007811!3.86e-10!86;UBERON:0000153!5.00e-10!94;UBERON:0000468!1.23e-09!333;UBERON:0000956!7.16e-09!21;UBERON:0001869!7.16e-09!21;UBERON:0000203!7.16e-09!21;UBERON:0002619!2.21e-07!17;UBERON:0000922!3.64e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.93e-25,64;UBERON:0003075,6.93e-25,64;UBERON:0007284,6.93e-25,64;UBERON:0001017,1.74e-22,73;UBERON:0001016,3.38e-22,75;UBERON:0000073,4.44e-22,54;UBERON:0010371,1.89e-21,73;UBERON:0004121,2.11e-21,95;UBERON:0000924,2.11e-21,95;UBERON:0006601,2.11e-21,95;UBERON:0001049,1.30e-20,52;UBERON:0005068,1.30e-20,52;UBERON:0006241,1.30e-20,52;UBERON:0007135,1.30e-20,52;UBERON:0010314,2.05e-20,92;UBERON:0003056,2.72e-20,49;UBERON:0002020,2.15e-17,34;UBERON:0000955,9.06e-17,47;UBERON:0006238,9.06e-17,47;UBERON:0003080,9.14e-17,40;UBERON:0002616,1.46e-16,46;UBERON:0002780,4.24e-16,39;UBERON:0001890,4.24e-16,39;UBERON:0006240,4.24e-16,39;UBERON:0003528,7.32e-14,29;UBERON:0002791,7.32e-14,29;UBERON:0001893,7.32e-14,29;UBERON:0000956,3.01e-09,21;UBERON:0001869,3.01e-09,21;UBERON:0000203,3.01e-09,21;UBERON:0002619,1.11e-07,17 | |||
|phase1_expression=2.7225304007815,0,0,0,0,1.00727563147134,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2257142999412,0,0,0.47997726838022,0.45881856213434,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,43.182608565623,36.1915644453667,55.7982126571512,0,5.66865406589161,1.5378032791413,3.30530828426282,1.39986421625363,0,0,0,0,5.40244815675489,1.71920063963254,3.6097046459421,38.8447604850428,46.5512061759389,28.5224131577781,0.338844532069132,0,0,0,0,0.299600110518405,2.68952813725088,23.1227835447905,18.4958135514416,20.8221711737868,37.9915809257059,39.977205912242,37.6046753589909,24.4405951096503,14.7075005857603,42.9451935897616,32.9433332259784,43.9314685112856,38.3789097294864,35.4057180741325,41.152156273984,25.4056529091257,49.5231096827878,48.5898427930256,107.834062283362,103.931326983345,65.6126049305058,1.66597625333005,4.45872204630035,1.44932244350839,0,0,0,0.649776417447669,0,2.52799956237153,1.1930122580464,0.519572009205738,0.35333957451034,2.39433813620357,3.84979432242953,12.7402619853323,0,2.81438353314578,3.29367825117628,3.0331466700887,1.94112595522402,0,27.6102378660574,7.45986905094384,5.48037860961854,5.07354093963329,7.68685466818375,12.8171690777918,6.91166252313215,0,0.722996784599558,0,4.36770494858005,1.32504911076236,1.45462575940567,0,2.63502717310392,5.65506108396329,0.510914110417183,0,0,0,43.1397041485889,25.1625331550245,28.774846633846,27.4642425903797,24.8043993610421,37.6096360652804,31.7992875612805,1.83310854930569,0.622034853050465,0.505445516867349,6.52369753248069,5.59517904739626,11.4951052216736,18.546399369951,21.8521985861787,36.6716730425657,53.5515350790672,53.8784916218441,24.8355235909455,1.5089759505299,4.72765200419548,6.33424046990216,6.79506770525482,5.56094498451196,5.57203466435466,4.32142486456681,5.9710280045548,0,0,0,3.10688658803253,3.04883877975425,1.62055855314913,3.31442629819294,4.13204886669548,2.46827380619805,3.48800917125612,4.56064782379353,4.43708300995244,2.13927804887525,1.64167464079095,0.324275238183423,0.584799949701329,0.878200461164203,0.134206418760372,26.49653351908,24.0796792967526,0.330418782983798,0.264450566663544,2.13288250535234,4.64473343720877,2.19074684247559,2.21851877085677,4.00280478920767,2.47293313946327,0.474529061544512,0.988193728344065,1.25667604400135,1.1937388322469,0.58489226135736,0.898819408654221,0.216138049874694,0.597423819763102,0.948339504765408,2.51346727741403,0,0.610953983535943,1.74557238450863,0.420814919341911,0.822074982615345,0.147610147979602,0,0.123397163921801,0,0.667380422864376,0.393117990226406,0,0,0,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0.184753190166605,3.60033682363921,2.60743962307241,3.73439188705414,3.28566347603903,1.50755631697634,1.42826184531608,0.390267295715598,0.472905432318573,0.8858587585951,0.478364305972461,0.327726629431476,0.172684981865896,0.289298117163023,0,0,0,0.827810238914197,29.5413085577537,23.090702258664,18.5246488275643,0.504941854408746,7.88770548540642,6.63745865304285,15.2950612390287,2.15071918157297,4.23317480756549,5.66153061577665,3.23848561339915,7.01414058987149,5.13874111330481,12.8528526568723,24.4136946558222,1.95872164033981,1.46598263418218,2.8044920905331,1.32745138339963,7.28341908464944,8.76738315197778,7.92141334974772,5.02013217897314,8.60818414242997,6.97756391554197,10.1789444253702,12.83390562185,3.47640433729398,2.10837217149998,2.06271086496374,37.7887962386705,12.2441543941291,3.10460841078611,10.7168517515796,12.7684968222437,8.56170324489939,10.86023535974,10.656273219011,0,0,1.98475558249466,1.15420377059036,2.09903754704677,1.99032652262914,2.626191568069,3.44695889464629,0.874442509889552,26.1449675834819,0.170870880797853,0.619160603889667,0.555583582109135,0,0.136694227721025,0.228778173206523,0,0,0.552799895217695,0,3.00519193902079,2.43983360552218,1.83609079397062,0.627264888043406,0.655087691238533,1.34864346384821,1.07449492442937,0.523511883968059,0.518459893167171,0,35.512655137104,34.5383221361591,20.351394326223,35.0012139019286,35.3897916328983,44.942329380547,36.0286722642465,16.0151393358059,7.02557607652263,3.38217769156408,18.4339204005034,1.58005560314089,2.63542779877213,2.15693010046137,1.16928740680016,1.61124026100733,0.993406773906324,0.360586348559907,0.295379054349154,0.302899349844443,0.990688486514998,0.302478555410522,1.16949456887703,1.05833025804362,1.28564592399726,0.453460767230423,0,0,0.335769232728157,0.772758376128762,1.31377732815827,6.41030684935428,0.857473516316263,2.50786052017682,44.0506437241312,34.5243927380383,47.5503276154699,26.4653900809279,22.6077231524312,24.1726047164704,24.9758325085768,25.2179873805563,28.0948293570207,27.4412965228465,12.4544817101012,19.1531939232495,14.3416228833473,13.6139761558245,24.5247400274739,21.8773775055517,16.6685045851211,16.0707344646337,18.2923949467335,15.6672271293554,21.0387818908899,17.7308760902912,12.6416035084341,16.7745899300758,14.8183509905482,20.4806287251722,16.5714586101143,14.6611007552416,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| |||
|short_description=p1@Pak3 | |||
}} |
Latest revision as of 16:04, 1 October 2015
Short description: | p1@Pak3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pak3_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000126592, ENSMUST00000156449_5end |
EntrezGene: | Pak3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.13e-14 | 39 |
electrically active cell | 1.13e-14 | 39 |
CNS neuron (sensu Vertebrata) | 2.21e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-14 | 23 |
neuron | 2.75e-13 | 33 |
neuronal stem cell | 2.75e-13 | 33 |
neuroblast | 2.75e-13 | 33 |
electrically signaling cell | 2.75e-13 | 33 |
neural cell | 1.04e-09 | 43 |
ectodermal cell | 1.47e-09 | 44 |
neurectodermal cell | 1.47e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.93e-25 | 64 |
neural plate | 6.93e-25 | 64 |
presumptive neural plate | 6.93e-25 | 64 |
central nervous system | 1.74e-22 | 73 |
nervous system | 3.38e-22 | 75 |
regional part of nervous system | 4.44e-22 | 54 |
ecto-epithelium | 1.89e-21 | 73 |
ectoderm-derived structure | 2.11e-21 | 95 |
ectoderm | 2.11e-21 | 95 |
presumptive ectoderm | 2.11e-21 | 95 |
neural tube | 1.30e-20 | 52 |
neural rod | 1.30e-20 | 52 |
future spinal cord | 1.30e-20 | 52 |
neural keel | 1.30e-20 | 52 |
structure with developmental contribution from neural crest | 2.05e-20 | 92 |
pre-chordal neural plate | 2.72e-20 | 49 |
gray matter | 2.15e-17 | 34 |
brain | 9.06e-17 | 47 |
future brain | 9.06e-17 | 47 |
anterior neural tube | 9.14e-17 | 40 |
regional part of brain | 1.46e-16 | 46 |
regional part of forebrain | 4.24e-16 | 39 |
forebrain | 4.24e-16 | 39 |
future forebrain | 4.24e-16 | 39 |
brain grey matter | 7.32e-14 | 29 |
regional part of telencephalon | 7.32e-14 | 29 |
telencephalon | 7.32e-14 | 29 |
cerebral cortex | 3.01e-09 | 21 |
cerebral hemisphere | 3.01e-09 | 21 |
pallium | 3.01e-09 | 21 |
regional part of cerebral cortex | 1.11e-07 | 17 |