FFCP PHASE1:Mm9::chrX:140367566..140367598,-: Difference between revisions
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{{FFCP|EntrezGene=13193|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=0bp_to_ENSMUST00000139920_5end|description=CAGE_peak_2_at_Dcx_5end|id=chrX:140367566..140367598,-|ontology_enrichment_celltype=CL:0000117!5.63e-13!23;CL:0000337!5.63e-13!23;CL:0000540!1.29e-11!33;CL:0000047!1.29e-11!33;CL:0000031!1.29e-11!33;CL:0000404!1.29e-11!33;CL:0000393!6.39e-08!39;CL:0000211!6.39e-08!39;CL:0000221!9.92e-07!44;CL:0000133!9.92e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,5.38e-16,23;CL:0000337,5.38e-16,23;CL:0000540,7.28e-09,33;CL:0000047,7.28e-09,33;CL:0000031,7.28e-09,33;CL:0000404,7.28e-09,33;CL:0002609,8.04e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.43e-19!71;UBERON:0003075!6.43e-19!71;UBERON:0007284!6.43e-19!71;UBERON:0001017!5.67e-18!73;UBERON:0005743!5.67e-18!73;UBERON:0003056!6.79e-18!49;UBERON:0001049!1.71e-17!52;UBERON:0005068!1.71e-17!52;UBERON:0006241!1.71e-17!52;UBERON:0007135!1.71e-17!52;UBERON:0000033!3.34e-17!63;UBERON:0000073!8.48e-17!75;UBERON:0001016!8.48e-17!75;UBERON:0000955!3.28e-16!50;UBERON:0006238!3.28e-16!50;UBERON:0002020!3.56e-16!34;UBERON:0003080!4.46e-16!40;UBERON:0004121!5.39e-16!102;UBERON:0000924!5.39e-16!102;UBERON:0006601!5.39e-16!102;UBERON:0002780!9.20e-16!39;UBERON:0001890!9.20e-16!39;UBERON:0006240!9.20e-16!39;UBERON:0002616!1.54e-15!49;UBERON:0002791!9.11e-14!29;UBERON:0003528!9.11e-14!29;UBERON:0001893!9.11e-14!29;UBERON:0000956!3.83e-10!21;UBERON:0001869!3.83e-10!21;UBERON:0000203!3.83e-10!21;UBERON:0000153!2.84e-09!94;UBERON:0007811!2.82e-08!86;UBERON:0002619!1.52e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.35e-21,34;UBERON:0000073,1.26e-20,54;UBERON:0003056,1.77e-20,49;UBERON:0002346,2.11e-20,64;UBERON:0003075,2.11e-20,64;UBERON:0007284,2.11e-20,64;UBERON:0001049,6.14e-20,52;UBERON:0005068,6.14e-20,52;UBERON:0006241,6.14e-20,52;UBERON:0007135,6.14e-20,52;UBERON:0003080,1.76e-18,40;UBERON:0002780,4.68e-18,39;UBERON:0001890,4.68e-18,39;UBERON:0006240,4.68e-18,39;UBERON:0003528,9.60e-18,29;UBERON:0002791,9.60e-18,29;UBERON:0001893,9.60e-18,29;UBERON:0000955,2.69e-17,47;UBERON:0006238,2.69e-17,47;UBERON:0001017,1.23e-16,73;UBERON:0002616,1.92e-16,46;UBERON:0010371,6.23e-16,73;UBERON:0001016,8.96e-16,75;UBERON:0004121,4.14e-14,95;UBERON:0000924,4.14e-14,95;UBERON:0006601,4.14e-14,95;UBERON:0000956,8.96e-14,21;UBERON:0001869,8.96e-14,21;UBERON:0000203,8.96e-14,21;UBERON:0010314,1.08e-10,92;UBERON:0002619,3.16e-10,17;UBERON:0002021,7.34e-08,10;UBERON:0000411,7.34e-08,10;UBERON:0001950,7.34e-08,10|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,17.1968991730658,24.8625760257855,11.4089652631112,0,0,0,0,0,0,0,84.4033444191008,73.4432304524397,70.6691870140644,2.57085885963423,2.20868540951614,64.7976327847107,40.4467887696957,45.041720543891,1.10115880999389,1.40456071893706,1.68967186581868,23.0801003527839,26.805879575506,29.1711487511786,0.558365998002762,1.12552522006336,1.68078072554491,7.07108605136802,16.5151149726959,22.927131836512,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.985903938436763,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.56136794089522,0.913396434936424,0.922461989024234,0.452167921657868,0.470354828542819,0,0,0,0,0.808834249737046,0,0,0,0,0.209446706813455,0,0,0,0,2.39665023047716,3.20250421973039,75.1413025634929,7.64827008846016,6.39288643325826,1.24672826735736,3.73154905055843,0.712875546952214,0,0,0,1.43132487258974,2.75882525320168,5.22180176435513,5.27466862425003,4.89862793889561,4.61209393025459,4.02917415606834,0.517406741478031,1.07783996466421,1.70195472151037,1.23165786914764,3.06874025398605,1.11218899690239,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,1.03562886267751,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0,0.268273401399619,0,0,0,0,0,0,0,2.52347938276953,180.700499338023,0,0,0,0,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.754005626400808,0.198956472041151,0,0,0,0,0.569003702859245,1.14248512609729,2.25415471346161,0.610953983535943,0.581857461502877,0.420814919341911,0,0,0,0,0,0.333690211432188,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,2.27389694124582,1.46668478797823,1.01847051465113,0,0.167506257441816,0,0,0.472905432318573,0,0.478364305972461,0,0,0,0,0,0,0,1.44495530989013,1.75817529888305,0,0,0.315508219416257,0,0.430846795465598,0.477937595905104,0.222798674082394,0.283076530788832,0.404810701674894,0.876767573733936,0.395287777946524,17.0300297703558,0,0.35613120733451,0.325773918707152,0,0,0.971122544619926,1.51161778482376,0.565815239267694,0.590603785761546,0.307435147943927,0,0.727067458955011,0.712994756769443,0,0,0,0.340439605753788,1.8006109403131,0.776152102696527,2.57204442037911,3.72414490648775,2.49716344642899,2.13913726782757,0.304464949114599,0,0,0,0,0.161464426695906,0.120625849856312,0.119372344003136,0,0,1.29797711407357,0,0.412773735926445,0,0,0,0,0,0,0,0,0.316335993581135,1.82987520414164,0.648032044930808,0.209088296014469,0.655087691238533,0.674321731924103,0.0826534557253359,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0.201652370273681,0,0,0,0,0,0,0,0,0,0,0,0,16.3778034358949,11.0478056761722,13.7494923225455,15.8104927756193,9.59115527678899,10.5755145634558,10.1253375034771,7.20513925158753,9.5159905886683,8.28416498802912,4.15149390336707,11.9707462020309,7.85374586469017,11.6691224192781,15.3017608718427,16.1782287436012,14.2237905793034,12.1560683770948,11.2321723357135,11.1186773176071,12.9274442944022,14.9014809695,14.327150642892,14.9178605103345,13.8993834872584,17.6228665774737,12.3996228760995,11.9603716687497,10.714233420886,12.5119082114238,14.4005086001874,12.9557338496316,10.9680647375768,11.6277133305863,14.1164070622996,12.6075765758598,12.6220301282213,11.3119975918272,14.2594319538155,14.5896990631012,11.7448667942932,11.5250244379409,11.867700251921,14.0992525479229,10.8027702149439,22.982573170291,9.59119594626174,9.23945532407683,2.67803664896381,0.661774257358546,0.927471342481686|short_description=p2@Dcx}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13193 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000139920_5end | |||
|cluster_id=chrX:140367566..140367598,- | |||
|description=CAGE_peak_2_at_Dcx_5end | |||
|id=chrX:140367566..140367598,- | |||
|ontology_enrichment_celltype=CL:0000117!5.63e-13!23;CL:0000337!5.63e-13!23;CL:0000540!1.29e-11!33;CL:0000047!1.29e-11!33;CL:0000031!1.29e-11!33;CL:0000404!1.29e-11!33;CL:0000393!6.39e-08!39;CL:0000211!6.39e-08!39;CL:0000221!9.92e-07!44;CL:0000133!9.92e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.38e-16,23;CL:0000337,5.38e-16,23;CL:0000540,7.28e-09,33;CL:0000047,7.28e-09,33;CL:0000031,7.28e-09,33;CL:0000404,7.28e-09,33;CL:0002609,8.04e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.43e-19!71;UBERON:0003075!6.43e-19!71;UBERON:0007284!6.43e-19!71;UBERON:0001017!5.67e-18!73;UBERON:0005743!5.67e-18!73;UBERON:0003056!6.79e-18!49;UBERON:0001049!1.71e-17!52;UBERON:0005068!1.71e-17!52;UBERON:0006241!1.71e-17!52;UBERON:0007135!1.71e-17!52;UBERON:0000033!3.34e-17!63;UBERON:0000073!8.48e-17!75;UBERON:0001016!8.48e-17!75;UBERON:0000955!3.28e-16!50;UBERON:0006238!3.28e-16!50;UBERON:0002020!3.56e-16!34;UBERON:0003080!4.46e-16!40;UBERON:0004121!5.39e-16!102;UBERON:0000924!5.39e-16!102;UBERON:0006601!5.39e-16!102;UBERON:0002780!9.20e-16!39;UBERON:0001890!9.20e-16!39;UBERON:0006240!9.20e-16!39;UBERON:0002616!1.54e-15!49;UBERON:0002791!9.11e-14!29;UBERON:0003528!9.11e-14!29;UBERON:0001893!9.11e-14!29;UBERON:0000956!3.83e-10!21;UBERON:0001869!3.83e-10!21;UBERON:0000203!3.83e-10!21;UBERON:0000153!2.84e-09!94;UBERON:0007811!2.82e-08!86;UBERON:0002619!1.52e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.35e-21,34;UBERON:0000073,1.26e-20,54;UBERON:0003056,1.77e-20,49;UBERON:0002346,2.11e-20,64;UBERON:0003075,2.11e-20,64;UBERON:0007284,2.11e-20,64;UBERON:0001049,6.14e-20,52;UBERON:0005068,6.14e-20,52;UBERON:0006241,6.14e-20,52;UBERON:0007135,6.14e-20,52;UBERON:0003080,1.76e-18,40;UBERON:0002780,4.68e-18,39;UBERON:0001890,4.68e-18,39;UBERON:0006240,4.68e-18,39;UBERON:0003528,9.60e-18,29;UBERON:0002791,9.60e-18,29;UBERON:0001893,9.60e-18,29;UBERON:0000955,2.69e-17,47;UBERON:0006238,2.69e-17,47;UBERON:0001017,1.23e-16,73;UBERON:0002616,1.92e-16,46;UBERON:0010371,6.23e-16,73;UBERON:0001016,8.96e-16,75;UBERON:0004121,4.14e-14,95;UBERON:0000924,4.14e-14,95;UBERON:0006601,4.14e-14,95;UBERON:0000956,8.96e-14,21;UBERON:0001869,8.96e-14,21;UBERON:0000203,8.96e-14,21;UBERON:0010314,1.08e-10,92;UBERON:0002619,3.16e-10,17;UBERON:0002021,7.34e-08,10;UBERON:0000411,7.34e-08,10;UBERON:0001950,7.34e-08,10 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,17.1968991730658,24.8625760257855,11.4089652631112,0,0,0,0,0,0,0,84.4033444191008,73.4432304524397,70.6691870140644,2.57085885963423,2.20868540951614,64.7976327847107,40.4467887696957,45.041720543891,1.10115880999389,1.40456071893706,1.68967186581868,23.0801003527839,26.805879575506,29.1711487511786,0.558365998002762,1.12552522006336,1.68078072554491,7.07108605136802,16.5151149726959,22.927131836512,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.985903938436763,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.56136794089522,0.913396434936424,0.922461989024234,0.452167921657868,0.470354828542819,0,0,0,0,0.808834249737046,0,0,0,0,0.209446706813455,0,0,0,0,2.39665023047716,3.20250421973039,75.1413025634929,7.64827008846016,6.39288643325826,1.24672826735736,3.73154905055843,0.712875546952214,0,0,0,1.43132487258974,2.75882525320168,5.22180176435513,5.27466862425003,4.89862793889561,4.61209393025459,4.02917415606834,0.517406741478031,1.07783996466421,1.70195472151037,1.23165786914764,3.06874025398605,1.11218899690239,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,1.03562886267751,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0,0.268273401399619,0,0,0,0,0,0,0,2.52347938276953,180.700499338023,0,0,0,0,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.754005626400808,0.198956472041151,0,0,0,0,0.569003702859245,1.14248512609729,2.25415471346161,0.610953983535943,0.581857461502877,0.420814919341911,0,0,0,0,0,0.333690211432188,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,2.27389694124582,1.46668478797823,1.01847051465113,0,0.167506257441816,0,0,0.472905432318573,0,0.478364305972461,0,0,0,0,0,0,0,1.44495530989013,1.75817529888305,0,0,0.315508219416257,0,0.430846795465598,0.477937595905104,0.222798674082394,0.283076530788832,0.404810701674894,0.876767573733936,0.395287777946524,17.0300297703558,0,0.35613120733451,0.325773918707152,0,0,0.971122544619926,1.51161778482376,0.565815239267694,0.590603785761546,0.307435147943927,0,0.727067458955011,0.712994756769443,0,0,0,0.340439605753788,1.8006109403131,0.776152102696527,2.57204442037911,3.72414490648775,2.49716344642899,2.13913726782757,0.304464949114599,0,0,0,0,0.161464426695906,0.120625849856312,0.119372344003136,0,0,1.29797711407357,0,0.412773735926445,0,0,0,0,0,0,0,0,0.316335993581135,1.82987520414164,0.648032044930808,0.209088296014469,0.655087691238533,0.674321731924103,0.0826534557253359,0.26175594198403,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0.201652370273681,0,0,0,0,0,0,0,0,0,0,0,0,16.3778034358949,11.0478056761722,13.7494923225455,15.8104927756193,9.59115527678899,10.5755145634558,10.1253375034771,7.20513925158753,9.5159905886683,8.28416498802912,4.15149390336707,11.9707462020309,7.85374586469017,11.6691224192781,15.3017608718427,16.1782287436012,14.2237905793034,12.1560683770948,11.2321723357135,11.1186773176071,12.9274442944022,14.9014809695,14.327150642892,14.9178605103345,13.8993834872584,17.6228665774737,12.3996228760995,11.9603716687497,10.714233420886,12.5119082114238,14.4005086001874,12.9557338496316,10.9680647375768,11.6277133305863,14.1164070622996,12.6075765758598,12.6220301282213,11.3119975918272,14.2594319538155,14.5896990631012,11.7448667942932,11.5250244379409,11.867700251921,14.0992525479229,10.8027702149439,22.982573170291,9.59119594626174,9.23945532407683,2.67803664896381,0.661774257358546,0.927471342481686 | |||
|short_description=p2@Dcx | |||
}} |
Latest revision as of 16:09, 1 October 2015
Short description: | p2@Dcx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dcx_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000139920_5end |
EntrezGene: | Dcx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.38e-16 | 23 |
neuroblast (sensu Vertebrata) | 5.38e-16 | 23 |
neuron | 7.28e-09 | 33 |
neuronal stem cell | 7.28e-09 | 33 |
neuroblast | 7.28e-09 | 33 |
electrically signaling cell | 7.28e-09 | 33 |
neuron of cerebral cortex | 8.04e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.35e-21 | 34 |
regional part of nervous system | 1.26e-20 | 54 |
pre-chordal neural plate | 1.77e-20 | 49 |
neurectoderm | 2.11e-20 | 64 |
neural plate | 2.11e-20 | 64 |
presumptive neural plate | 2.11e-20 | 64 |
neural tube | 6.14e-20 | 52 |
neural rod | 6.14e-20 | 52 |
future spinal cord | 6.14e-20 | 52 |
neural keel | 6.14e-20 | 52 |
anterior neural tube | 1.76e-18 | 40 |
regional part of forebrain | 4.68e-18 | 39 |
forebrain | 4.68e-18 | 39 |
future forebrain | 4.68e-18 | 39 |
brain grey matter | 9.60e-18 | 29 |
regional part of telencephalon | 9.60e-18 | 29 |
telencephalon | 9.60e-18 | 29 |
brain | 2.69e-17 | 47 |
future brain | 2.69e-17 | 47 |
central nervous system | 1.23e-16 | 73 |
regional part of brain | 1.92e-16 | 46 |
ecto-epithelium | 6.23e-16 | 73 |
nervous system | 8.96e-16 | 75 |
ectoderm-derived structure | 4.14e-14 | 95 |
ectoderm | 4.14e-14 | 95 |
presumptive ectoderm | 4.14e-14 | 95 |
cerebral cortex | 8.96e-14 | 21 |
cerebral hemisphere | 8.96e-14 | 21 |
pallium | 8.96e-14 | 21 |
structure with developmental contribution from neural crest | 1.08e-10 | 92 |
regional part of cerebral cortex | 3.16e-10 | 17 |
occipital lobe | 7.34e-08 | 10 |
visual cortex | 7.34e-08 | 10 |
neocortex | 7.34e-08 | 10 |