FF:10017-101C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005317 | ||
|accession_numbers=CAGE;DRX008670;DRR009542;DRZ000967;DRZ002352;DRZ012317;DRZ013702 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010017 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.40!248.63!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.09!121.68!HNF1B;;chr2:122042770..122042785,-!p1@TFCP2L1!2.08!119.39!TFCP2L1;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.66!ELF3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.99!POU3F3;;chr6:134210243..134210257,+!p1@TCF21!1.77!57.69!TCF21;;chr10:119302232..119302265,+!p1@EMX2!1.66!44.84!EMX2;;chr12:100897130..100897149,+!p3@NR1H4!1.61!39.48!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.56!35.46!HNF4A;;chr11:34642612..34642646,+!p1@EHF!1.53!32.63!EHF;;chr1:40105299..40105326,-!p1@HEYL!1.51!31.36!HEYL;;chr1:151804244..151804310,-!p1@RORC!1.47!28.61!RORC;;chr5:169532896..169532904,+!p1@FOXI1!1.45!27.35!FOXI1;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.32!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.43!25.77!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.77!ZBED1;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.26!SOX18;;chr19:12348371..12348386,-!p5@ZNF44!1.42!25.53!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.42!25.22!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.41!28.84!MECOM;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.35!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.35!41.92!DACH1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.34!20.96!HOXC5;;chr2:242556880..242556899,-!p5@THAP4!1.34!20.96!THAP4;;chr11:16419037..16419064,-!p3@SOX6!1.34!20.80!SOX6;;chr16:79634595..79634620,-!p2@MAF!1.33!36.41!MAF;;chr3:69915385..69915438,+!p3@MITF!1.33!20.25!MITF;;chr3:141043020..141043049,+!p17@ZBTB38!1.32!20.10!ZBTB38;;chr16:79634624..79634642,-!p1@MAF!1.31!74.47!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.22!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!1.27!22.14!KLF15;;chr10:119302268..119302282,+!p4@EMX2!1.27!17.49!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.26!17.26!PAX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.10!HOXD8;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.10!HOXB6;;chr10:102505327..102505344,+!p1@PAX2!1.26!17.02!PAX2;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.71!SPI1;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.31!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.73!IRF6;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.57!TBX2;;chr2:73144617..73144654,+!p1@EMX1!1.21!15.13!EMX1;;chr7:115608319..115608352,-!p4@TFEC!1.21!15.05!TFEC;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.82!IRX2;;chr20:43030002..43030028,+!p3@HNF4A!1.19!14.66!HNF4A;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.02!GATA3;;chr7:115608357..115608372,-!p3@TFEC!1.18!14.26!TFEC;;chr9:1050331..1050363,+!p1@DMRT2!1.17!13.79!DMRT2;;chr3:69915369..69915381,+!p4@MITF!1.17!13.63!MITF;;chr10:119303078..119303169,+!p2@EMX2!1.15!13.24!EMX2;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.16!IRF8;;chr19:46801639..46801699,+!p1@HIF3A!1.15!13.16!HIF3A;;chr6:50789717..50789729,+!p4@TFAP2B!1.15!13.00!TFAP2B;;chr17:53342311..53342400,+!p1@HLF!1.14!14.66!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.61!GATA2;;chr10:119301928..119301955,+!p7@EMX2!1.13!12.53!EMX2;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.06!HOXA7;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr6:100912752..100912778,-!p2@SIM1!1.09!11.43!SIM1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.35!HOXB8;;chr18:42277095..42277130,+!p8@SETBP1!1.09!11.35!SETBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.95!ZNF366;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.07!10.72!POU3F3;;chr1:217311025..217311049,-!p10@ESRRG!1.07!10.72!ESRRG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.07!10.64!LHX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.26!FOXQ1;;chr8:76319876..76319926,+!p1@HNF4G!1.06!10.56!HNF4G;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.56!SALL1;;chr4:149363494..149363543,-!p1@NR3C2!1.06!10.40!NR3C2;;chr3:25470156..25470227,+!p2@RARB!1.05!10.24!RARB;;chr12:121416340..121416360,+!p1@HNF1A!1.05!10.24!HNF1A;;chr6:126240442..126240459,+!p4@NCOA7!1.04!12.69!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.04!10.09!HOXA9;;chr16:51185573..51185593,-!p3@SALL1!1.04!10.09!SALL1;;chr17:46703212..46703238,-!p2@HOXB9!1.04!10.01!HOXB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.85!SALL1;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.11!HOXB7;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.63!KLF15;;chr21:38071430..38071456,+!p1@SIM2!1.03!9.61!SIM2;;chr3:169381183..169381205,-!p4@MECOM!1.02!9.38!MECOM;;chr10:119302150..119302163,+!p8@EMX2!1.02!9.38!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.01!13.24!PROX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.14!HOXA3;;chr17:59477275..59477286,+!p3@TBX2!1.00!12.21!TBX2;;chr2:68592406..68592424,+!p1@PLEK!1.00!8.91!PLEK;;chr5:92918919..92918942,+!p1@NR2F1!0.97!38.06!NR2F1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.27!HOXC10;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.20!HOXD3;;chr2:176981499..176981522,+!p2@HOXD10!0.96!8.04!HOXD10;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.04!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.96!IRX2;;chr11:34664014..34664045,+!p4@EHF!0.95!7.88!EHF;;chr3:114343039..114343085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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.40!248.63!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.09!121.68!HNF1B;;chr2:122042770..122042785,-!p1@TFCP2L1!2.08!119.39!TFCP2L1;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.66!ELF3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.99!POU3F3;;chr6:134210243..134210257,+!p1@TCF21!1.77!57.69!TCF21;;chr10:119302232..119302265,+!p1@EMX2!1.66!44.84!EMX2;;chr12:100897130..100897149,+!p3@NR1H4!1.61!39.48!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.56!35.46!HNF4A;;chr11:34642612..34642646,+!p1@EHF!1.53!32.63!EHF;;chr1:40105299..40105326,-!p1@HEYL!1.51!31.36!HEYL;;chr1:151804244..151804310,-!p1@RORC!1.47!28.61!RORC;;chr5:169532896..169532904,+!p1@FOXI1!1.45!27.35!FOXI1;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.32!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.43!25.77!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.77!ZBED1;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.26!SOX18;;chr19:12348371..12348386,-!p5@ZNF44!1.42!25.53!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.42!25.22!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.41!28.84!MECOM;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.35!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.35!41.92!DACH1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.34!20.96!HOXC5;;chr2:242556880..242556899,-!p5@THAP4!1.34!20.96!THAP4;;chr11:16419037..16419064,-!p3@SOX6!1.34!20.80!SOX6;;chr16:79634595..79634620,-!p2@MAF!1.33!36.41!MAF;;chr3:69915385..69915438,+!p3@MITF!1.33!20.25!MITF;;chr3:141043020..141043049,+!p17@ZBTB38!1.32!20.10!ZBTB38;;chr16:79634624..79634642,-!p1@MAF!1.31!74.47!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.22!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!1.27!22.14!KLF15;;chr10:119302268..119302282,+!p4@EMX2!1.27!17.49!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.26!17.26!PAX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.10!HOXD8;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.10!HOXB6;;chr10:102505327..102505344,+!p1@PAX2!1.26!17.02!PAX2;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.71!SPI1;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.31!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.73!IRF6;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.57!TBX2;;chr2:73144617..73144654,+!p1@EMX1!1.21!15.13!EMX1;;chr7:115608319..115608352,-!p4@TFEC!1.21!15.05!TFEC;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.82!IRX2;;chr20:43030002..43030028,+!p3@HNF4A!1.19!14.66!HNF4A;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.02!GATA3;;chr7:115608357..115608372,-!p3@TFEC!1.18!14.26!TFEC;;chr9:1050331..1050363,+!p1@DMRT2!1.17!13.79!DMRT2;;chr3:69915369..69915381,+!p4@MITF!1.17!13.63!MITF;;chr10:119303078..119303169,+!p2@EMX2!1.15!13.24!EMX2;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.16!IRF8;;chr19:46801639..46801699,+!p1@HIF3A!1.15!13.16!HIF3A;;chr6:50789717..50789729,+!p4@TFAP2B!1.15!13.00!TFAP2B;;chr17:53342311..53342400,+!p1@HLF!1.14!14.66!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.61!GATA2;;chr10:119301928..119301955,+!p7@EMX2!1.13!12.53!EMX2;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.06!HOXA7;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr6:100912752..100912778,-!p2@SIM1!1.09!11.43!SIM1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.35!HOXB8;;chr18:42277095..42277130,+!p8@SETBP1!1.09!11.35!SETBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.95!ZNF366;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.07!10.72!POU3F3;;chr1:217311025..217311049,-!p10@ESRRG!1.07!10.72!ESRRG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.07!10.64!LHX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.26!FOXQ1;;chr8:76319876..76319926,+!p1@HNF4G!1.06!10.56!HNF4G;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.56!SALL1;;chr4:149363494..149363543,-!p1@NR3C2!1.06!10.40!NR3C2;;chr3:25470156..25470227,+!p2@RARB!1.05!10.24!RARB;;chr12:121416340..121416360,+!p1@HNF1A!1.05!10.24!HNF1A;;chr6:126240442..126240459,+!p4@NCOA7!1.04!12.69!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.04!10.09!HOXA9;;chr16:51185573..51185593,-!p3@SALL1!1.04!10.09!SALL1;;chr17:46703212..46703238,-!p2@HOXB9!1.04!10.01!HOXB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.85!SALL1;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.11!HOXB7;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.63!KLF15;;chr21:38071430..38071456,+!p1@SIM2!1.03!9.61!SIM2;;chr3:169381183..169381205,-!p4@MECOM!1.02!9.38!MECOM;;chr10:119302150..119302163,+!p8@EMX2!1.02!9.38!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.01!13.24!PROX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.14!HOXA3;;chr17:59477275..59477286,+!p3@TBX2!1.00!12.21!TBX2;;chr2:68592406..68592424,+!p1@PLEK!1.00!8.91!PLEK;;chr5:92918919..92918942,+!p1@NR2F1!0.97!38.06!NR2F1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.27!HOXC10;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.20!HOXD3;;chr2:176981499..176981522,+!p2@HOXD10!0.96!8.04!HOXD10;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.04!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.96!IRX2;;chr11:34664014..34664045,+!p4@EHF!0.95!7.88!EHF;;chr3:114343039..114343085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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10017-101C8 | |id=FF:10017-101C8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010017 | ||
|is_obsolete= | |||
|library_id=CNhs10622 | |||
|library_id_phase_based=2:CNhs10622 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10017 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10017 | |||
|name=kidney, adult, pool1 | |name=kidney, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10622,LSID656,release008,COMPLETED | |profile_hcage=CNhs10622,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.289068845040772,0,0,0,0,0,0.128750814954385,0.168153873077708,0.269400415362674,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.0329432353726146,0,0,0,-0.0897602098664585,0,0.0317814002409846,0,0,0.0329432353726146,-0.0979578962680575,0,0,-0.100013354406248,0,0,0,0,0,0,0,0,0,0,0,0,-0.0943993695231049,0,0,0,0,0,0,0,0,0.0075663791281502,0,0.0329432353726146,0,0.0635628004819691,0,0.0329432353726146,0.0329432353726146,-0.0969923612426051,0,0,0.0216557113862738,0,0,0,0,0,0,0,0,0,0,0.0329432353726146,0,0,0.0329432353726146,0,0,0.0259940943401823,0.0329432353726146,0.167531308613342,0,0.0635628004819691,0,0.0329432353726146,0.0371725368485085,0.229678663712557,0.19322993622446,0,0.046883666076118,0.0309824902045678,0.071690748053464,0.0164716176863073,0.0329432353726146,0.0317814002409846,0.0921650105405382,0.0209639873616643,-0.122005583114588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17209346218373,0,0,0,0.0921650105405382,0.0512382630084448,0.0921650105405382,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -8 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -8 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=mixed | |sample_ethnicity=mixed | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.28239366164682e-244!GO:0005737;cytoplasm;6.99178026798931e-204!GO:0044444;cytoplasmic part;1.4023256244832e-163!GO:0043227;membrane-bound organelle;5.76521532719053e-123!GO:0043231;intracellular membrane-bound organelle;5.76521532719053e-123!GO:0043226;organelle;8.78971257093388e-121!GO:0043229;intracellular organelle;1.87012326243186e-120!GO:0044422;organelle part;8.22083811936491e-86!GO:0005739;mitochondrion;5.69355711247143e-85!GO:0044446;intracellular organelle part;1.85194473124082e-84!GO:0005515;protein binding;1.15828310886014e-65!GO:0032991;macromolecular complex;2.49284370971623e-60!GO:0031090;organelle membrane;1.6805131807319e-55!GO:0044429;mitochondrial part;2.06241844691567e-54!GO:0044237;cellular metabolic process;1.12879587806904e-53!GO:0030529;ribonucleoprotein complex;2.90207361270631e-52!GO:0044238;primary metabolic process;2.02684613141662e-49!GO:0043233;organelle lumen;7.25765537730321e-46!GO:0031974;membrane-enclosed lumen;7.25765537730321e-46!GO:0031967;organelle envelope;8.69185464248591e-42!GO:0031975;envelope;2.00495301613527e-41!GO:0033036;macromolecule localization;6.11424987573062e-40!GO:0015031;protein transport;1.49704762921313e-39!GO:0003723;RNA binding;2.7492875163923e-39!GO:0019538;protein metabolic process;1.46581313479864e-37!GO:0008104;protein localization;1.68438457304139e-37!GO:0045184;establishment of protein localization;1.68438457304139e-37!GO:0009058;biosynthetic process;1.46001933738998e-35!GO:0043170;macromolecule metabolic process;6.87114303583264e-35!GO:0005740;mitochondrial envelope;1.67953841714779e-34!GO:0005829;cytosol;2.04966281530552e-33!GO:0031966;mitochondrial membrane;2.84099258064722e-33!GO:0019866;organelle inner membrane;7.21253523427213e-33!GO:0005840;ribosome;7.45964517223233e-33!GO:0044260;cellular macromolecule metabolic process;1.04161016382466e-32!GO:0044428;nuclear part;1.08182501926757e-32!GO:0005743;mitochondrial inner membrane;1.93618913292917e-32!GO:0016043;cellular component organization and biogenesis;7.78331273319461e-32!GO:0044267;cellular protein metabolic process;1.81364381286281e-31!GO:0043234;protein complex;1.08315465552313e-30!GO:0044249;cellular biosynthetic process;1.36911142252783e-30!GO:0006412;translation;1.41665360447582e-29!GO:0046907;intracellular transport;1.18732452755207e-27!GO:0003735;structural constituent of ribosome;2.58606369884418e-27!GO:0006119;oxidative phosphorylation;5.29261723253664e-27!GO:0009059;macromolecule biosynthetic process;2.91643345023705e-26!GO:0006886;intracellular protein transport;5.49551319589431e-25!GO:0006396;RNA processing;1.6745763536349e-24!GO:0031980;mitochondrial lumen;2.42387358282685e-24!GO:0005759;mitochondrial matrix;2.42387358282685e-24!GO:0033279;ribosomal subunit;2.42387358282685e-24!GO:0005783;endoplasmic reticulum;4.20698108191869e-24!GO:0016071;mRNA metabolic process;4.95793240856466e-24!GO:0008380;RNA splicing;7.64176028498921e-24!GO:0051186;cofactor metabolic process;4.21614278446424e-22!GO:0044248;cellular catabolic process;3.8642975778233e-21!GO:0065003;macromolecular complex assembly;5.33715177069834e-21!GO:0044455;mitochondrial membrane part;3.39107383790875e-20!GO:0012505;endomembrane system;4.28507090527513e-20!GO:0006397;mRNA processing;5.62089698860441e-20!GO:0006732;coenzyme metabolic process;1.25599406283737e-19!GO:0031981;nuclear lumen;1.16933097627098e-18!GO:0022607;cellular component assembly;1.67066920359657e-18!GO:0005794;Golgi apparatus;3.59169511967005e-18!GO:0048770;pigment granule;4.00191281176118e-18!GO:0042470;melanosome;4.00191281176118e-18!GO:0005746;mitochondrial respiratory chain;4.80761313421185e-18!GO:0051641;cellular localization;8.28718793755393e-18!GO:0051649;establishment of cellular localization;1.41457246849962e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.39840488836156e-17!GO:0005634;nucleus;4.76174901549339e-17!GO:0044265;cellular macromolecule catabolic process;1.09872053294855e-16!GO:0009055;electron carrier activity;1.31207736345752e-16!GO:0005681;spliceosome;1.81382866842474e-16!GO:0016192;vesicle-mediated transport;4.90572552469269e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.75983233821427e-16!GO:0003954;NADH dehydrogenase activity;5.75983233821427e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.75983233821427e-16!GO:0016491;oxidoreductase activity;2.00805538543775e-15!GO:0006457;protein folding;3.05276629366058e-15!GO:0044432;endoplasmic reticulum part;3.7390551284156e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.7390551284156e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.87728126643204e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.96135633620108e-15!GO:0009056;catabolic process;1.70198963241743e-14!GO:0006082;organic acid metabolic process;2.72842043237292e-14!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.08366950984324e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.39101728864462e-14!GO:0042773;ATP synthesis coupled electron transport;6.39101728864462e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.39101728864462e-14!GO:0045271;respiratory chain complex I;6.39101728864462e-14!GO:0005747;mitochondrial respiratory chain complex I;6.39101728864462e-14!GO:0019752;carboxylic acid metabolic process;7.33451997029828e-14!GO:0015935;small ribosomal subunit;1.03925066391193e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.43024607158016e-13!GO:0005773;vacuole;1.50067992382031e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.6808289605097e-13!GO:0009057;macromolecule catabolic process;1.798244318833e-13!GO:0008134;transcription factor binding;5.40754233994009e-13!GO:0044445;cytosolic part;6.6905536585774e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.19139309401659e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.12314455464938e-12!GO:0005761;mitochondrial ribosome;1.22858026130054e-12!GO:0000313;organellar ribosome;1.22858026130054e-12!GO:0019941;modification-dependent protein catabolic process;1.46509396829942e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.46509396829942e-12!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.6136373451764e-12!GO:0006091;generation of precursor metabolites and energy;1.73032550416276e-12!GO:0022618;protein-RNA complex assembly;2.08235387487674e-12!GO:0044257;cellular protein catabolic process;2.38039104477978e-12!GO:0006605;protein targeting;2.49266395847625e-12!GO:0048193;Golgi vesicle transport;2.69740257697491e-12!GO:0016874;ligase activity;2.75641716714915e-12!GO:0043285;biopolymer catabolic process;4.02579613831804e-12!GO:0015986;ATP synthesis coupled proton transport;4.36272235792362e-12!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.36272235792362e-12!GO:0051082;unfolded protein binding;5.11819219314045e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.47979361657512e-12!GO:0005789;endoplasmic reticulum membrane;8.5777929945326e-12!GO:0000166;nucleotide binding;8.84595153344851e-12!GO:0015934;large ribosomal subunit;1.15034020978696e-11!GO:0005654;nucleoplasm;1.52563561396202e-11!GO:0015078;hydrogen ion transmembrane transporter activity;1.82486020652296e-11!GO:0006996;organelle organization and biogenesis;2.4000547939559e-11!GO:0000323;lytic vacuole;3.92362457814621e-11!GO:0005764;lysosome;3.92362457814621e-11!GO:0045333;cellular respiration;4.77473644716938e-11!GO:0006754;ATP biosynthetic process;9.16814010767355e-11!GO:0006753;nucleoside phosphate metabolic process;9.16814010767355e-11!GO:0006461;protein complex assembly;1.02779243564357e-10!GO:0009060;aerobic respiration;1.18080138745749e-10!GO:0016469;proton-transporting two-sector ATPase complex;1.25938363211802e-10!GO:0005768;endosome;1.32393607498795e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.43164186850571e-10!GO:0016462;pyrophosphatase activity;1.46761703746609e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;1.48921522536213e-10!GO:0031982;vesicle;1.64233649374809e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.93659910726764e-10!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.93659910726764e-10!GO:0008135;translation factor activity, nucleic acid binding;1.93659910726764e-10!GO:0008565;protein transporter activity;2.00943572868757e-10!GO:0009142;nucleoside triphosphate biosynthetic process;2.03039377963429e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.03039377963429e-10!GO:0019829;cation-transporting ATPase activity;2.35972054053577e-10!GO:0010467;gene expression;4.06167007028881e-10!GO:0031410;cytoplasmic vesicle;4.11147760406781e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.21700686203805e-10!GO:0009144;purine nucleoside triphosphate metabolic process;4.21700686203805e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.24211591576772e-10!GO:0046034;ATP metabolic process;4.29818240731162e-10!GO:0030163;protein catabolic process;4.36207940925266e-10!GO:0006752;group transfer coenzyme metabolic process;4.5090004155552e-10!GO:0051187;cofactor catabolic process;4.6780191981259e-10!GO:0012501;programmed cell death;5.70329754541696e-10!GO:0006915;apoptosis;6.17069492498327e-10!GO:0006099;tricarboxylic acid cycle;9.30068739849044e-10!GO:0046356;acetyl-CoA catabolic process;9.30068739849044e-10!GO:0009141;nucleoside triphosphate metabolic process;1.13449365468071e-09!GO:0051188;cofactor biosynthetic process;1.1904246849236e-09!GO:0009150;purine ribonucleotide metabolic process;1.25315101182502e-09!GO:0044451;nucleoplasm part;1.33698608357189e-09!GO:0009259;ribonucleotide metabolic process;1.33698608357189e-09!GO:0006163;purine nucleotide metabolic process;1.40464802536567e-09!GO:0008219;cell death;1.46551041558777e-09!GO:0016265;death;1.46551041558777e-09!GO:0005793;ER-Golgi intermediate compartment;1.47116507185479e-09!GO:0017111;nucleoside-triphosphatase activity;2.40338534275699e-09!GO:0009109;coenzyme catabolic process;2.43164035052659e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.58735137583491e-09!GO:0006084;acetyl-CoA metabolic process;2.67974225032477e-09!GO:0031988;membrane-bound vesicle;3.16222723963299e-09!GO:0006164;purine nucleotide biosynthetic process;3.17377601352122e-09!GO:0050662;coenzyme binding;4.51610293433978e-09!GO:0006446;regulation of translational initiation;5.79933318573542e-09!GO:0009260;ribonucleotide biosynthetic process;6.19098783705569e-09!GO:0016023;cytoplasmic membrane-bound vesicle;7.06936431688791e-09!GO:0005635;nuclear envelope;7.29903206088621e-09!GO:0009108;coenzyme biosynthetic process;7.7066140994963e-09!GO:0043228;non-membrane-bound organelle;1.31175023007029e-08!GO:0043232;intracellular non-membrane-bound organelle;1.31175023007029e-08!GO:0015980;energy derivation by oxidation of organic compounds;1.74015099838688e-08!GO:0043283;biopolymer metabolic process;1.79903322157438e-08!GO:0006512;ubiquitin cycle;1.87158181588626e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.22209182708588e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.41128725782192e-08!GO:0048523;negative regulation of cellular process;4.4787232591537e-08!GO:0003712;transcription cofactor activity;4.5510648121405e-08!GO:0003743;translation initiation factor activity;5.13716334768421e-08!GO:0048037;cofactor binding;6.01820012350209e-08!GO:0006413;translational initiation;6.75953958857631e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;6.83166723038585e-08!GO:0000375;RNA splicing, via transesterification reactions;6.83166723038585e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.83166723038585e-08!GO:0016044;membrane organization and biogenesis;6.8710938647e-08!GO:0005730;nucleolus;7.0088101944628e-08!GO:0016604;nuclear body;9.01034441021958e-08!GO:0017076;purine nucleotide binding;9.06033218486164e-08!GO:0032787;monocarboxylic acid metabolic process;1.02807381346431e-07!GO:0008092;cytoskeletal protein binding;1.17652038327361e-07!GO:0006913;nucleocytoplasmic transport;1.17652038327361e-07!GO:0016607;nuclear speck;1.22769230688792e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.75185404109577e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.61619556452505e-07!GO:0051169;nuclear transport;2.6954980894135e-07!GO:0043069;negative regulation of programmed cell death;3.15219529628516e-07!GO:0044440;endosomal part;3.54705408249939e-07!GO:0010008;endosome membrane;3.54705408249939e-07!GO:0043066;negative regulation of apoptosis;3.96636407328647e-07!GO:0008639;small protein conjugating enzyme activity;4.30541392816115e-07!GO:0051246;regulation of protein metabolic process;5.36963170970589e-07!GO:0005770;late endosome;6.59075156498731e-07!GO:0004842;ubiquitin-protein ligase activity;7.04534645029037e-07!GO:0031252;leading edge;9.12771829025319e-07!GO:0044255;cellular lipid metabolic process;9.67268318624048e-07!GO:0043412;biopolymer modification;1.01552116828688e-06!GO:0048519;negative regulation of biological process;1.14761720612358e-06!GO:0017038;protein import;1.19677211057259e-06!GO:0031965;nuclear membrane;1.34027816627183e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.45244187416489e-06!GO:0032553;ribonucleotide binding;1.53692396695514e-06!GO:0032555;purine ribonucleotide binding;1.53692396695514e-06!GO:0019787;small conjugating protein ligase activity;1.76897490076738e-06!GO:0044431;Golgi apparatus part;2.01433284934584e-06!GO:0006793;phosphorus metabolic process;2.09288829417454e-06!GO:0006796;phosphate metabolic process;2.09288829417454e-06!GO:0044262;cellular carbohydrate metabolic process;2.38514766791503e-06!GO:0022890;inorganic cation transmembrane transporter activity;2.43846491548969e-06!GO:0045259;proton-transporting ATP synthase complex;2.74561740156303e-06!GO:0006629;lipid metabolic process;2.96661782410124e-06!GO:0006464;protein modification process;3.03859672686535e-06!GO:0048475;coated membrane;3.03859672686535e-06!GO:0030117;membrane coat;3.03859672686535e-06!GO:0005525;GTP binding;3.34397406848828e-06!GO:0030029;actin filament-based process;3.45361155968111e-06!GO:0005774;vacuolar membrane;3.49211553997447e-06!GO:0030120;vesicle coat;5.69584731348196e-06!GO:0030662;coated vesicle membrane;5.69584731348196e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.87303353581784e-06!GO:0003924;GTPase activity;6.46712087960542e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.3977839683201e-06!GO:0042981;regulation of apoptosis;8.64830420773669e-06!GO:0006916;anti-apoptosis;9.14056898797761e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.06120908762615e-05!GO:0006613;cotranslational protein targeting to membrane;1.50559871291769e-05!GO:0043067;regulation of programmed cell death;1.52812554530548e-05!GO:0016787;hydrolase activity;1.65939458351617e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.77537882894397e-05!GO:0015992;proton transport;1.90754018831339e-05!GO:0006807;nitrogen compound metabolic process;2.23134383844894e-05!GO:0006631;fatty acid metabolic process;2.33599474124583e-05!GO:0016881;acid-amino acid ligase activity;2.43370272640395e-05!GO:0016564;transcription repressor activity;2.5578762266277e-05!GO:0008654;phospholipid biosynthetic process;2.58015353498535e-05!GO:0006818;hydrogen transport;2.80065145766961e-05!GO:0007005;mitochondrion organization and biogenesis;2.9889778156811e-05!GO:0044437;vacuolar part;3.28678835990638e-05!GO:0004298;threonine endopeptidase activity;3.56496326154459e-05!GO:0003714;transcription corepressor activity;3.68775426662714e-05!GO:0006118;electron transport;3.75863388977505e-05!GO:0032561;guanyl ribonucleotide binding;3.92328611190928e-05!GO:0019001;guanyl nucleotide binding;3.92328611190928e-05!GO:0003779;actin binding;4.52388755007658e-05!GO:0006897;endocytosis;4.69000215140653e-05!GO:0010324;membrane invagination;4.69000215140653e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.78707147280131e-05!GO:0051287;NAD binding;4.81108579319703e-05!GO:0048471;perinuclear region of cytoplasm;4.84620024649632e-05!GO:0043687;post-translational protein modification;5.61989131053983e-05!GO:0009117;nucleotide metabolic process;6.76509074822904e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.03368201950652e-05!GO:0007264;small GTPase mediated signal transduction;8.25186108359078e-05!GO:0042623;ATPase activity, coupled;8.73661078518739e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.86592853192368e-05!GO:0051170;nuclear import;0.000102328317557398!GO:0051789;response to protein stimulus;0.000102328317557398!GO:0006986;response to unfolded protein;0.000102328317557398!GO:0044453;nuclear membrane part;0.000102819955782111!GO:0030554;adenyl nucleotide binding;0.000109155346645079!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000109155346645079!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000121991279351953!GO:0004812;aminoacyl-tRNA ligase activity;0.000121991279351953!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000121991279351953!GO:0006606;protein import into nucleus;0.000133126904623638!GO:0005975;carbohydrate metabolic process;0.0001384145030273!GO:0030133;transport vesicle;0.00014219547408712!GO:0008361;regulation of cell size;0.000152070955429655!GO:0006520;amino acid metabolic process;0.000153717434037726!GO:0000139;Golgi membrane;0.000161377773975272!GO:0042802;identical protein binding;0.000168323057933284!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000177101740832416!GO:0000245;spliceosome assembly;0.000178114931816912!GO:0006366;transcription from RNA polymerase II promoter;0.000180151512531753!GO:0016049;cell growth;0.000185732426455662!GO:0005762;mitochondrial large ribosomal subunit;0.000186440254410492!GO:0000315;organellar large ribosomal subunit;0.000186440254410492!GO:0043038;amino acid activation;0.000188282122280017!GO:0006418;tRNA aminoacylation for protein translation;0.000188282122280017!GO:0043039;tRNA aminoacylation;0.000188282122280017!GO:0016853;isomerase activity;0.000191063736299422!GO:0005798;Golgi-associated vesicle;0.000204336319651538!GO:0000151;ubiquitin ligase complex;0.000218655291133827!GO:0016310;phosphorylation;0.000221273510349212!GO:0042254;ribosome biogenesis and assembly;0.000222001629848726!GO:0008610;lipid biosynthetic process;0.000222546810735357!GO:0009308;amine metabolic process;0.000224392022551291!GO:0005996;monosaccharide metabolic process;0.000225471242815716!GO:0006612;protein targeting to membrane;0.000228510436916598!GO:0004177;aminopeptidase activity;0.000257861653624548!GO:0003713;transcription coactivator activity;0.000259365597608193!GO:0030867;rough endoplasmic reticulum membrane;0.000260874230267784!GO:0005777;peroxisome;0.000267929115323347!GO:0042579;microbody;0.000267929115323347!GO:0005741;mitochondrial outer membrane;0.000278456225559761!GO:0005788;endoplasmic reticulum lumen;0.000280356264856709!GO:0016887;ATPase activity;0.000280552193067643!GO:0016563;transcription activator activity;0.000287712863789816!GO:0051179;localization;0.000289486101676033!GO:0000314;organellar small ribosomal subunit;0.000300184446371285!GO:0005763;mitochondrial small ribosomal subunit;0.000300184446371285!GO:0019318;hexose metabolic process;0.000309926825874402!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000316756484825854!GO:0051427;hormone receptor binding;0.000321767407122358!GO:0046483;heterocycle metabolic process;0.000325195679454218!GO:0005643;nuclear pore;0.000325976116160765!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000338515222249522!GO:0006519;amino acid and derivative metabolic process;0.000338515222249522!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000338708938253749!GO:0043021;ribonucleoprotein binding;0.000347034525534257!GO:0001558;regulation of cell growth;0.000349195667362352!GO:0006810;transport;0.00037277429067663!GO:0019899;enzyme binding;0.000372960252527651!GO:0030532;small nuclear ribonucleoprotein complex;0.000385054894870057!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00039404095846596!GO:0065002;intracellular protein transport across a membrane;0.00039404095846596!GO:0000096;sulfur amino acid metabolic process;0.000406356863139744!GO:0031968;organelle outer membrane;0.00042376307425964!GO:0005905;coated pit;0.000429930872931739!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000432430809488737!GO:0032446;protein modification by small protein conjugation;0.000471786340729415!GO:0005791;rough endoplasmic reticulum;0.000549950597256152!GO:0005765;lysosomal membrane;0.000563615921201658!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000566486419027282!GO:0015399;primary active transmembrane transporter activity;0.000566486419027282!GO:0050657;nucleic acid transport;0.000566486419027282!GO:0051236;establishment of RNA localization;0.000566486419027282!GO:0050658;RNA transport;0.000566486419027282!GO:0016740;transferase activity;0.000571398583235227!GO:0019867;outer membrane;0.000595574982626187!GO:0043623;cellular protein complex assembly;0.000598641057540827!GO:0016567;protein ubiquitination;0.000605769542443151!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000605769542443151!GO:0035257;nuclear hormone receptor binding;0.000629512618854514!GO:0006950;response to stress;0.000702164900003369!GO:0007243;protein kinase cascade;0.000734680611420656!GO:0003724;RNA helicase activity;0.00074888170781629!GO:0006403;RNA localization;0.00076138043264031!GO:0045454;cell redox homeostasis;0.00077873113422823!GO:0043566;structure-specific DNA binding;0.000817028455860547!GO:0046930;pore complex;0.0008760260505849!GO:0005524;ATP binding;0.000887058395845339!GO:0046467;membrane lipid biosynthetic process;0.000898195634026609!GO:0006650;glycerophospholipid metabolic process;0.000914467849042738!GO:0032559;adenyl ribonucleotide binding;0.000934164909322914!GO:0006399;tRNA metabolic process;0.000934164909322914!GO:0006643;membrane lipid metabolic process;0.000975612047997244!GO:0006749;glutathione metabolic process;0.00102011643731081!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102822708853007!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102822708853007!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102822708853007!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00104078734924854!GO:0009892;negative regulation of metabolic process;0.00104078734924854!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00107831867740886!GO:0051234;establishment of localization;0.00123057816656454!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00135096680966581!GO:0005885;Arp2/3 protein complex;0.00137306267498043!GO:0031324;negative regulation of cellular metabolic process;0.00137493166654469!GO:0001726;ruffle;0.00140703304192813!GO:0009066;aspartate family amino acid metabolic process;0.00144611851099301!GO:0051920;peroxiredoxin activity;0.00149318018449115!GO:0008250;oligosaccharyl transferase complex;0.00159773949687069!GO:0033116;ER-Golgi intermediate compartment membrane;0.00173255296470903!GO:0006635;fatty acid beta-oxidation;0.00183671104887006!GO:0043492;ATPase activity, coupled to movement of substances;0.00184601875408712!GO:0008154;actin polymerization and/or depolymerization;0.00184601875408712!GO:0030118;clathrin coat;0.00184808692319564!GO:0046474;glycerophospholipid biosynthetic process;0.00186129086811966!GO:0005769;early endosome;0.00188360274484966!GO:0006006;glucose metabolic process;0.00195339254733317!GO:0006066;alcohol metabolic process;0.00199987437467402!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.00222245023389105!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00222767576144813!GO:0031902;late endosome membrane;0.00224314722412565!GO:0051128;regulation of cellular component organization and biogenesis;0.00236056643508119!GO:0030027;lamellipodium;0.00236056643508119!GO:0004300;enoyl-CoA hydratase activity;0.00238737451878897!GO:0004576;oligosaccharyl transferase activity;0.00242587555048629!GO:0009165;nucleotide biosynthetic process;0.00259022963856306!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0026500740256505!GO:0008026;ATP-dependent helicase activity;0.0026500740256505!GO:0004364;glutathione transferase activity;0.00267488875274419!GO:0035258;steroid hormone receptor binding;0.0027293682240648!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00287315211193499!GO:0006259;DNA metabolic process;0.00294590181226961!GO:0043681;protein import into mitochondrion;0.00367163698752374!GO:0016408;C-acyltransferase activity;0.00369044028401582!GO:0044275;cellular carbohydrate catabolic process;0.00379418784938556!GO:0048500;signal recognition particle;0.00382663213706363!GO:0006839;mitochondrial transport;0.00385777976236757!GO:0051540;metal cluster binding;0.00386953537722044!GO:0051536;iron-sulfur cluster binding;0.00386953537722044!GO:0003697;single-stranded DNA binding;0.00387253493540363!GO:0004386;helicase activity;0.00398511284348739!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0044258476542321!GO:0040008;regulation of growth;0.00471983843072305!GO:0051028;mRNA transport;0.00478032559405888!GO:0006891;intra-Golgi vesicle-mediated transport;0.00503438683375531!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0053472062194842!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00544248989210035!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00544870927638226!GO:0005048;signal sequence binding;0.00554056871346754!GO:0031072;heat shock protein binding;0.00554056871346754!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00604543938935814!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00604543938935814!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00604543938935814!GO:0016197;endosome transport;0.00626251996350011!GO:0030658;transport vesicle membrane;0.00638291897695646!GO:0019395;fatty acid oxidation;0.00638291897695646!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00638406135225669!GO:0015002;heme-copper terminal oxidase activity;0.00638406135225669!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00638406135225669!GO:0004129;cytochrome-c oxidase activity;0.00638406135225669!GO:0019904;protein domain specific binding;0.00644802215336303!GO:0016126;sterol biosynthetic process;0.0064503981170769!GO:0016481;negative regulation of transcription;0.00653891013362477!GO:0008186;RNA-dependent ATPase activity;0.0065757202938505!GO:0051087;chaperone binding;0.00664045430828476!GO:0016859;cis-trans isomerase activity;0.00761212812939764!GO:0007010;cytoskeleton organization and biogenesis;0.00763152393049257!GO:0046489;phosphoinositide biosynthetic process;0.00773390227505949!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00783089434067042!GO:0045047;protein targeting to ER;0.00783089434067042!GO:0006695;cholesterol biosynthetic process;0.00810545502218949!GO:0009063;amino acid catabolic process;0.00851187975326571!GO:0006790;sulfur metabolic process;0.00856840567681087!GO:0009081;branched chain family amino acid metabolic process;0.00870580018890739!GO:0030384;phosphoinositide metabolic process;0.00871976558516234!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00911259429815706!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00914397793745546!GO:0030659;cytoplasmic vesicle membrane;0.0092995163608577!GO:0007588;excretion;0.00947193334216773!GO:0030119;AP-type membrane coat adaptor complex;0.0095295638076159!GO:0003690;double-stranded DNA binding;0.00985236115510571!GO:0006402;mRNA catabolic process;0.00989712984167236!GO:0045045;secretory pathway;0.0099856976957076!GO:0006364;rRNA processing;0.0100111914651598!GO:0030131;clathrin adaptor complex;0.0101018226893194!GO:0001666;response to hypoxia;0.0101018226893194!GO:0006979;response to oxidative stress;0.0102833096207864!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.010438551751945!GO:0048487;beta-tubulin binding;0.0105713601103365!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0105814310060765!GO:0043488;regulation of mRNA stability;0.0105909902989386!GO:0043487;regulation of RNA stability;0.0105909902989386!GO:0051539;4 iron, 4 sulfur cluster binding;0.0108079097576518!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.010867663323322!GO:0012506;vesicle membrane;0.0108780465055296!GO:0006555;methionine metabolic process;0.01089947989918!GO:0018196;peptidyl-asparagine modification;0.0113499926999286!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0113499926999286!GO:0015036;disulfide oxidoreductase activity;0.0114269640026236!GO:0007040;lysosome organization and biogenesis;0.0115149367222106!GO:0044270;nitrogen compound catabolic process;0.0115149367222106!GO:0016791;phosphoric monoester hydrolase activity;0.0120173926635515!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0120741317700822!GO:0030134;ER to Golgi transport vesicle;0.0123079634063815!GO:0050811;GABA receptor binding;0.0123403130958216!GO:0006644;phospholipid metabolic process;0.012810768443758!GO:0006595;polyamine metabolic process;0.0130121346462648!GO:0006672;ceramide metabolic process;0.0136315235523707!GO:0008430;selenium binding;0.01380711154837!GO:0048522;positive regulation of cellular process;0.0138833349929135!GO:0007265;Ras protein signal transduction;0.0138906422899044!GO:0008286;insulin receptor signaling pathway;0.0138906422899044!GO:0005083;small GTPase regulator activity;0.0139091790546963!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0140442354255039!GO:0030127;COPII vesicle coat;0.0142082129366738!GO:0012507;ER to Golgi transport vesicle membrane;0.0142082129366738!GO:0004197;cysteine-type endopeptidase activity;0.0143980170292628!GO:0016072;rRNA metabolic process;0.0144036361579582!GO:0019843;rRNA binding;0.0144036361579582!GO:0005869;dynactin complex;0.0144179623476644!GO:0030663;COPI coated vesicle membrane;0.014865496068898!GO:0030126;COPI vesicle coat;0.014865496068898!GO:0008312;7S RNA binding;0.015174365171797!GO:0017166;vinculin binding;0.015174365171797!GO:0000097;sulfur amino acid biosynthetic process;0.0152294701401991!GO:0004004;ATP-dependent RNA helicase activity;0.0154773932121865!GO:0006414;translational elongation;0.0157583309735299!GO:0030145;manganese ion binding;0.0158406772218574!GO:0051168;nuclear export;0.0158406772218574!GO:0044433;cytoplasmic vesicle part;0.0158746821378756!GO:0006626;protein targeting to mitochondrion;0.0160335654122964!GO:0046519;sphingoid metabolic process;0.0164429760879879!GO:0004185;serine carboxypeptidase activity;0.0166835766288588!GO:0005938;cell cortex;0.0168102556188135!GO:0003729;mRNA binding;0.0171566077774017!GO:0006892;post-Golgi vesicle-mediated transport;0.0172180635009513!GO:0008383;manganese superoxide dismutase activity;0.0173412336308264!GO:0001315;age-dependent response to reactive oxygen species;0.0173412336308264!GO:0008287;protein serine/threonine phosphatase complex;0.0176182990911938!GO:0006767;water-soluble vitamin metabolic process;0.0179082599326621!GO:0006607;NLS-bearing substrate import into nucleus;0.018044221483655!GO:0009083;branched chain family amino acid catabolic process;0.0185074385545181!GO:0030100;regulation of endocytosis;0.0185074385545181!GO:0009310;amine catabolic process;0.0189543452288848!GO:0030660;Golgi-associated vesicle membrane;0.0189543452288848!GO:0008139;nuclear localization sequence binding;0.0189711607234673!GO:0007033;vacuole organization and biogenesis;0.0190464333358728!GO:0033176;proton-transporting V-type ATPase complex;0.0196247446273728!GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.0196247446273728!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0198157213373573!GO:0051270;regulation of cell motility;0.0198157213373573!GO:0050794;regulation of cellular process;0.0201295948566847!GO:0003988;acetyl-CoA C-acyltransferase activity;0.020355734182495!GO:0030132;clathrin coat of coated pit;0.0204254229455334!GO:0007030;Golgi organization and biogenesis;0.0204769762455884!GO:0000159;protein phosphatase type 2A complex;0.0206683223271081!GO:0006509;membrane protein ectodomain proteolysis;0.0207234336449637!GO:0033619;membrane protein proteolysis;0.0207234336449637!GO:0006665;sphingolipid metabolic process;0.0207692245716282!GO:0030569;chymotrypsin inhibitor activity;0.020964429810639!GO:0030521;androgen receptor signaling pathway;0.021615424689938!GO:0051252;regulation of RNA metabolic process;0.0218705162996483!GO:0033673;negative regulation of kinase activity;0.0222132929416378!GO:0006469;negative regulation of protein kinase activity;0.0222132929416378!GO:0008234;cysteine-type peptidase activity;0.0230213709025962!GO:0007006;mitochondrial membrane organization and biogenesis;0.0236901811944012!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0246016453772148!GO:0030880;RNA polymerase complex;0.0252005558621191!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0254815994589442!GO:0009967;positive regulation of signal transduction;0.025560693924546!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0257408560636343!GO:0033043;regulation of organelle organization and biogenesis;0.0257408560636343!GO:0004448;isocitrate dehydrogenase activity;0.0261834930241429!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0262714126284921!GO:0015629;actin cytoskeleton;0.0265262661652062!GO:0008652;amino acid biosynthetic process;0.0268301709872569!GO:0045893;positive regulation of transcription, DNA-dependent;0.0276950697415839!GO:0045892;negative regulation of transcription, DNA-dependent;0.0277124466363258!GO:0051346;negative regulation of hydrolase activity;0.0277124466363258!GO:0051271;negative regulation of cell motility;0.0277124466363258!GO:0016568;chromatin modification;0.0277124466363258!GO:0008047;enzyme activator activity;0.0287125233751639!GO:0000059;protein import into nucleus, docking;0.0290078116535863!GO:0003746;translation elongation factor activity;0.0298269403106836!GO:0043022;ribosome binding;0.0298269403106836!GO:0005862;muscle thin filament tropomyosin;0.0301289788027178!GO:0007034;vacuolar transport;0.0305037751080914!GO:0035035;histone acetyltransferase binding;0.0315474584048244!GO:0048468;cell development;0.0315474584048244!GO:0032940;secretion by cell;0.0318163591796001!GO:0016327;apicolateral plasma membrane;0.0322296759378903!GO:0030137;COPI-coated vesicle;0.032480580096159!GO:0043296;apical junction complex;0.032603680735831!GO:0008601;protein phosphatase type 2A regulator activity;0.0329299550545995!GO:0030518;steroid hormone receptor signaling pathway;0.0330649074851012!GO:0050749;apolipoprotein E receptor binding;0.0332557923434441!GO:0001725;stress fiber;0.0337951265423044!GO:0032432;actin filament bundle;0.0337951265423044!GO:0051101;regulation of DNA binding;0.0337951265423044!GO:0006007;glucose catabolic process;0.0339858278149287!GO:0005667;transcription factor complex;0.0339858278149287!GO:0048518;positive regulation of biological process;0.0343585550880934!GO:0030041;actin filament polymerization;0.0349564638001996!GO:0005758;mitochondrial intermembrane space;0.0350169948496149!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0352999198198433!GO:0046983;protein dimerization activity;0.0357619601860576!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0358686846574654!GO:0006401;RNA catabolic process;0.0359821093487287!GO:0045177;apical part of cell;0.0360588637767688!GO:0046164;alcohol catabolic process;0.0360588637767688!GO:0051235;maintenance of localization;0.0363129060131955!GO:0006661;phosphatidylinositol biosynthetic process;0.0365681630609945!GO:0005832;chaperonin-containing T-complex;0.037429421206157!GO:0045786;negative regulation of progression through cell cycle;0.0376545094115046!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0383026961423857!GO:0050681;androgen receptor binding;0.0397183179303027!GO:0045792;negative regulation of cell size;0.0400012235968896!GO:0030695;GTPase regulator activity;0.0403200200190734!GO:0030176;integral to endoplasmic reticulum membrane;0.0404219893889309!GO:0004680;casein kinase activity;0.0410292340187788!GO:0044438;microbody part;0.0413072869853921!GO:0044439;peroxisomal part;0.0413072869853921!GO:0050660;FAD binding;0.0414203705631511!GO:0005099;Ras GTPase activator activity;0.0419295488420913!GO:0016405;CoA-ligase activity;0.0420974839883964!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0424632151170066!GO:0000428;DNA-directed RNA polymerase complex;0.0424632151170066!GO:0005923;tight junction;0.0425322966375624!GO:0006325;establishment and/or maintenance of chromatin architecture;0.042966396841488!GO:0019902;phosphatase binding;0.0434723834952887!GO:0051348;negative regulation of transferase activity;0.0442832442013926!GO:0030832;regulation of actin filament length;0.0445673729921504!GO:0016070;RNA metabolic process;0.0447618986647044!GO:0030308;negative regulation of cell growth;0.045294861715413!GO:0016860;intramolecular oxidoreductase activity;0.0459882848666001!GO:0006693;prostaglandin metabolic process;0.046410443756937!GO:0006692;prostanoid metabolic process;0.046410443756937!GO:0032535;regulation of cellular component size;0.0468088113213724!GO:0005784;translocon complex;0.0477622678444184!GO:0006376;mRNA splice site selection;0.0477652825141891!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0477652825141891!GO:0065009;regulation of a molecular function;0.0477963715893451!GO:0000062;acyl-CoA binding;0.0481853250690551!GO:0009966;regulation of signal transduction;0.0481853250690551!GO:0004192;cathepsin D activity;0.0481853250690551!GO:0016052;carbohydrate catabolic process;0.0482158270577982!GO:0008238;exopeptidase activity;0.0491147880796191!GO:0003711;transcription elongation regulator activity;0.0496648324596264 | |||
|sample_id=10017 | |sample_id=10017 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=HNF1A:6.28269066374;HNF4A_NR2F1,2:3.93395453235;ADNP_IRX_SIX_ZHX:3.71420882853;AR:2.12159427098;ALX1:2.01744992309;SP1:1.96932214447;SNAI1..3:1.96897769706;PAX6:1.9558552635;HOX{A6,A7,B6,B7}:1.92570453162;EP300:1.88088136302;TFCP2:1.79516727426;FOXQ1:1.69495475948;ZEB1:1.69015168453;NR5A1,2:1.60091655044;MYOD1:1.57691910214;NR6A1:1.56531029797;SREBF1,2:1.44657912533;NKX3-2:1.43768346638;PAX5:1.43588952136;ESRRA:1.43422817718;MAZ:1.34998001804;MTF1:1.33669614413;FOXD3:1.26368052589;NFATC1..3:1.20651487129;STAT1,3:1.18274548005;FOX{D1,D2}:1.17489073314;NR3C1:1.16611753264;T:1.11565192316;FOXO1,3,4:1.10057935671;NKX2-3_NKX2-5:1.06430660813;HIC1:1.05219945312;STAT2,4,6:1.03549308545;SOX5:0.963750428507;ESR1:0.931740189567;MYBL2:0.92479352486;HBP1_HMGB_SSRP1_UBTF:0.909453414527;FOXP3:0.904288412923;MED-1{core}:0.878163942138;VSX1,2:0.838304140317;TLX1..3_NFIC{dimer}:0.789520953312;XCPE1{core}:0.776722997301;RXRA_VDR{dimer}:0.776510097358;PATZ1:0.764289991405;LHX3,4:0.747193684154;GTF2I:0.723605411785;TEAD1:0.690567696326;SMAD1..7,9:0.674892101802;TBP:0.665725568473;NR1H4:0.654157537168;PAX1,9:0.636092053504;TFAP2{A,C}:0.627329874406;NANOG{mouse}:0.599637762872;IRF7:0.595395481897;TFAP2B:0.585380897313;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.580643178273;PRDM1:0.545957686706;HAND1,2:0.538890796831;MYFfamily:0.52075620476;RBPJ:0.499279368593;IKZF1:0.493385349098;GFI1B:0.492192519007;RXR{A,B,G}:0.477445334359;TGIF1:0.468266873359;ATF2:0.459813391237;DBP:0.44474322204;BPTF:0.436225692306;GFI1:0.431075391128;FOX{I1,J2}:0.414766169463;bHLH_family:0.403616548642;PDX1:0.393724996292;MZF1:0.386171758731;SRF:0.369230409405;MTE{core}:0.357301472721;SPZ1:0.338572965952;ZNF423:0.336996545169;FOXL1:0.331108308346;FOXN1:0.329465716137;PBX1:0.329442929308;IRF1,2:0.30187383008;POU2F1..3:0.273747466942;LMO2:0.260906524089;PPARG:0.228470239848;EBF1:0.227060870801;RFX1:0.218411832344;ZFP161:0.206496066359;GTF2A1,2:0.184624415984;GCM1,2:0.164658345974;ZNF143:0.164073045548;TFAP4:0.119086960078;NKX2-1,4:0.114374981228;ATF6:0.100910053724;ETS1,2:0.0929683516519;EGR1..3:0.0922303334102;RFX2..5_RFXANK_RFXAP:0.091992142222;TEF:0.0908908722867;MAFB:0.0748360875405;FOXA2:0.0611651710255;ELF1,2,4:0.0608658916745;MEF2{A,B,C,D}:0.0584685000818;PITX1..3:0.0405326403186;ATF4:0.0358587740412;ZNF148:0.0340751091252;ZBTB16:0.0279835825185;SPIB:0.0178423085485;PRRX1,2:0.0146159954016;FOXM1:-0.00990699440247;KLF4:-0.0100248547589;NHLH1,2:-0.0193682990498;NKX6-1,2:-0.0213346348612;POU6F1:-0.0224917410238;XBP1:-0.0602970125481;IKZF2:-0.0820306011456;SPI1:-0.0993341189417;NFE2:-0.122545130877;POU3F1..4:-0.122946491939;TLX2:-0.127764305335;ONECUT1,2:-0.130473841526;GATA6:-0.132920422256;NRF1:-0.137286711685;JUN:-0.139651919166;DMAP1_NCOR{1,2}_SMARC:-0.151664184619;NFY{A,B,C}:-0.177445295283;CUX2:-0.196723725009;NFIX:-0.199104613927;RORA:-0.206512250659;RREB1:-0.207794639217;GZF1:-0.229063520508;ZIC1..3:-0.276849511718;ELK1,4_GABP{A,B1}:-0.280042627738;POU5F1:-0.285347126088;EN1,2:-0.299604094626;TBX4,5:-0.303557347221;ARID5B:-0.314342336234;HIF1A:-0.320145837953;FOXP1:-0.335162377216;HMX1:-0.361004940951;NFE2L2:-0.369626425941;REST:-0.389106198762;GLI1..3:-0.397410749036;EVI1:-0.408343044689;TP53:-0.411669239118;NFIL3:-0.41497889036;NFKB1_REL_RELA:-0.415372023081;PAX2:-0.43637825051;HMGA1,2:-0.439605015536;BREu{core}:-0.452419065562;YY1:-0.466143683265;HLF:-0.478368816662;SOX{8,9,10}:-0.480738717044;STAT5{A,B}:-0.490392533077;CEBPA,B_DDIT3:-0.50156279225;HOX{A4,D4}:-0.574523065572;POU1F1:-0.582061032341;CDC5L:-0.614056218691;GATA4:-0.618438668001;ATF5_CREB3:-0.618914565342;PAX4:-0.62371982561;HOX{A5,B5}:-0.629187787978;UFEwm:-0.641028007223;FOSL2:-0.651691824822;OCT4_SOX2{dimer}:-0.655518166242;BACH2:-0.664880086724;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.67235660548;HSF1,2:-0.694425837544;SOX2:-0.69451476091;RUNX1..3:-0.725013116535;ZBTB6:-0.727784353655;FOS_FOS{B,L1}_JUN{B,D}:-0.740181330327;FOX{F1,F2,J1}:-0.741368838447;LEF1_TCF7_TCF7L1,2:-0.779079141811;ALX4:-0.834243869405;NFE2L1:-0.872589720101;CREB1:-0.909821728726;ZNF384:-0.924022512097;AIRE:-0.928475883746;ZNF238:-0.957671461535;NKX3-1:-0.95979381671;NANOG:-1.00130147767;PAX8:-1.0018201458;TAL1_TCF{3,4,12}:-1.08925493642;SOX17:-1.10053154908;E2F1..5:-1.10242941345;TFDP1:-1.1688393974;CDX1,2,4:-1.44235875664;HES1:-1.47188349267;CRX:-1.52068047059;MYB:-1.52933306172;AHR_ARNT_ARNT2:-1.55023677183;HOXA9_MEIS1:-1.61227484734;NKX2-2,8:-1.7551682066;TOPORS:-1.89330712307;PAX3,7:-1.96544129657 | |top_motifs=HNF1A:6.28269066374;HNF4A_NR2F1,2:3.93395453235;ADNP_IRX_SIX_ZHX:3.71420882853;AR:2.12159427098;ALX1:2.01744992309;SP1:1.96932214447;SNAI1..3:1.96897769706;PAX6:1.9558552635;HOX{A6,A7,B6,B7}:1.92570453162;EP300:1.88088136302;TFCP2:1.79516727426;FOXQ1:1.69495475948;ZEB1:1.69015168453;NR5A1,2:1.60091655044;MYOD1:1.57691910214;NR6A1:1.56531029797;SREBF1,2:1.44657912533;NKX3-2:1.43768346638;PAX5:1.43588952136;ESRRA:1.43422817718;MAZ:1.34998001804;MTF1:1.33669614413;FOXD3:1.26368052589;NFATC1..3:1.20651487129;STAT1,3:1.18274548005;FOX{D1,D2}:1.17489073314;NR3C1:1.16611753264;T:1.11565192316;FOXO1,3,4:1.10057935671;NKX2-3_NKX2-5:1.06430660813;HIC1:1.05219945312;STAT2,4,6:1.03549308545;SOX5:0.963750428507;ESR1:0.931740189567;MYBL2:0.92479352486;HBP1_HMGB_SSRP1_UBTF:0.909453414527;FOXP3:0.904288412923;MED-1{core}:0.878163942138;VSX1,2:0.838304140317;TLX1..3_NFIC{dimer}:0.789520953312;XCPE1{core}:0.776722997301;RXRA_VDR{dimer}:0.776510097358;PATZ1:0.764289991405;LHX3,4:0.747193684154;GTF2I:0.723605411785;TEAD1:0.690567696326;SMAD1..7,9:0.674892101802;TBP:0.665725568473;NR1H4:0.654157537168;PAX1,9:0.636092053504;TFAP2{A,C}:0.627329874406;NANOG{mouse}:0.599637762872;IRF7:0.595395481897;TFAP2B:0.585380897313;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.580643178273;PRDM1:0.545957686706;HAND1,2:0.538890796831;MYFfamily:0.52075620476;RBPJ:0.499279368593;IKZF1:0.493385349098;GFI1B:0.492192519007;RXR{A,B,G}:0.477445334359;TGIF1:0.468266873359;ATF2:0.459813391237;DBP:0.44474322204;BPTF:0.436225692306;GFI1:0.431075391128;FOX{I1,J2}:0.414766169463;bHLH_family:0.403616548642;PDX1:0.393724996292;MZF1:0.386171758731;SRF:0.369230409405;MTE{core}:0.357301472721;SPZ1:0.338572965952;ZNF423:0.336996545169;FOXL1:0.331108308346;FOXN1:0.329465716137;PBX1:0.329442929308;IRF1,2:0.30187383008;POU2F1..3:0.273747466942;LMO2:0.260906524089;PPARG:0.228470239848;EBF1:0.227060870801;RFX1:0.218411832344;ZFP161:0.206496066359;GTF2A1,2:0.184624415984;GCM1,2:0.164658345974;ZNF143:0.164073045548;TFAP4:0.119086960078;NKX2-1,4:0.114374981228;ATF6:0.100910053724;ETS1,2:0.0929683516519;EGR1..3:0.0922303334102;RFX2..5_RFXANK_RFXAP:0.091992142222;TEF:0.0908908722867;MAFB:0.0748360875405;FOXA2:0.0611651710255;ELF1,2,4:0.0608658916745;MEF2{A,B,C,D}:0.0584685000818;PITX1..3:0.0405326403186;ATF4:0.0358587740412;ZNF148:0.0340751091252;ZBTB16:0.0279835825185;SPIB:0.0178423085485;PRRX1,2:0.0146159954016;FOXM1:-0.00990699440247;KLF4:-0.0100248547589;NHLH1,2:-0.0193682990498;NKX6-1,2:-0.0213346348612;POU6F1:-0.0224917410238;XBP1:-0.0602970125481;IKZF2:-0.0820306011456;SPI1:-0.0993341189417;NFE2:-0.122545130877;POU3F1..4:-0.122946491939;TLX2:-0.127764305335;ONECUT1,2:-0.130473841526;GATA6:-0.132920422256;NRF1:-0.137286711685;JUN:-0.139651919166;DMAP1_NCOR{1,2}_SMARC:-0.151664184619;NFY{A,B,C}:-0.177445295283;CUX2:-0.196723725009;NFIX:-0.199104613927;RORA:-0.206512250659;RREB1:-0.207794639217;GZF1:-0.229063520508;ZIC1..3:-0.276849511718;ELK1,4_GABP{A,B1}:-0.280042627738;POU5F1:-0.285347126088;EN1,2:-0.299604094626;TBX4,5:-0.303557347221;ARID5B:-0.314342336234;HIF1A:-0.320145837953;FOXP1:-0.335162377216;HMX1:-0.361004940951;NFE2L2:-0.369626425941;REST:-0.389106198762;GLI1..3:-0.397410749036;EVI1:-0.408343044689;TP53:-0.411669239118;NFIL3:-0.41497889036;NFKB1_REL_RELA:-0.415372023081;PAX2:-0.43637825051;HMGA1,2:-0.439605015536;BREu{core}:-0.452419065562;YY1:-0.466143683265;HLF:-0.478368816662;SOX{8,9,10}:-0.480738717044;STAT5{A,B}:-0.490392533077;CEBPA,B_DDIT3:-0.50156279225;HOX{A4,D4}:-0.574523065572;POU1F1:-0.582061032341;CDC5L:-0.614056218691;GATA4:-0.618438668001;ATF5_CREB3:-0.618914565342;PAX4:-0.62371982561;HOX{A5,B5}:-0.629187787978;UFEwm:-0.641028007223;FOSL2:-0.651691824822;OCT4_SOX2{dimer}:-0.655518166242;BACH2:-0.664880086724;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.67235660548;HSF1,2:-0.694425837544;SOX2:-0.69451476091;RUNX1..3:-0.725013116535;ZBTB6:-0.727784353655;FOS_FOS{B,L1}_JUN{B,D}:-0.740181330327;FOX{F1,F2,J1}:-0.741368838447;LEF1_TCF7_TCF7L1,2:-0.779079141811;ALX4:-0.834243869405;NFE2L1:-0.872589720101;CREB1:-0.909821728726;ZNF384:-0.924022512097;AIRE:-0.928475883746;ZNF238:-0.957671461535;NKX3-1:-0.95979381671;NANOG:-1.00130147767;PAX8:-1.0018201458;TAL1_TCF{3,4,12}:-1.08925493642;SOX17:-1.10053154908;E2F1..5:-1.10242941345;TFDP1:-1.1688393974;CDX1,2,4:-1.44235875664;HES1:-1.47188349267;CRX:-1.52068047059;MYB:-1.52933306172;AHR_ARNT_ARNT2:-1.55023677183;HOXA9_MEIS1:-1.61227484734;NKX2-2,8:-1.7551682066;TOPORS:-1.89330712307;PAX3,7:-1.96544129657 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10017-101C8;search_select_hide=table117:FF:10017-101C8 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | kidney, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10622 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10622
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10622
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.192 |
| 10 | 10 | 0.0493 |
| 100 | 100 | 0.618 |
| 101 | 101 | 0.335 |
| 102 | 102 | 0.122 |
| 103 | 103 | 0.147 |
| 104 | 104 | 0.463 |
| 105 | 105 | 0.937 |
| 106 | 106 | 0.873 |
| 107 | 107 | 0.194 |
| 108 | 108 | 0.998 |
| 109 | 109 | 0.1 |
| 11 | 11 | 0.155 |
| 110 | 110 | 0.0925 |
| 111 | 111 | 0.0167 |
| 112 | 112 | 0.443 |
| 113 | 113 | 0.779 |
| 114 | 114 | 0.0136 |
| 115 | 115 | 0.827 |
| 116 | 116 | 0.156 |
| 117 | 117 | 0.00966 |
| 118 | 118 | 0.162 |
| 119 | 119 | 0.635 |
| 12 | 12 | 0.968 |
| 120 | 120 | 0.144 |
| 121 | 121 | 0.415 |
| 122 | 122 | 0.423 |
| 123 | 123 | 0.0049 |
| 124 | 124 | 0.595 |
| 125 | 125 | 8.94152e-4 |
| 126 | 126 | 0.175 |
| 127 | 127 | 0.122 |
| 128 | 128 | 0.85 |
| 129 | 129 | 0.688 |
| 13 | 13 | 0.327 |
| 130 | 130 | 0.437 |
| 131 | 131 | 0.548 |
| 132 | 132 | 0.626 |
| 133 | 133 | 0.269 |
| 134 | 134 | 0.573 |
| 135 | 135 | 0.397 |
| 136 | 136 | 0.651 |
| 137 | 137 | 0.377 |
| 138 | 138 | 0.513 |
| 139 | 139 | 0.169 |
| 14 | 14 | 0.621 |
| 140 | 140 | 0.657 |
| 141 | 141 | 0.154 |
| 142 | 142 | 0.998 |
| 143 | 143 | 0.00967 |
| 144 | 144 | 0.364 |
| 145 | 145 | 0.823 |
| 146 | 146 | 0.0614 |
| 147 | 147 | 0.776 |
| 148 | 148 | 0.44 |
| 149 | 149 | 0.387 |
| 15 | 15 | 0.136 |
| 150 | 150 | 0.614 |
| 151 | 151 | 0.713 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.402 |
| 154 | 154 | 0.173 |
| 155 | 155 | 0.799 |
| 156 | 156 | 0.473 |
| 157 | 157 | 0.468 |
| 158 | 158 | 0.173 |
| 159 | 159 | 0.643 |
| 16 | 16 | 0.877 |
| 160 | 160 | 0.286 |
| 161 | 161 | 0.251 |
| 162 | 162 | 0.622 |
| 163 | 163 | 0.791 |
| 164 | 164 | 0.0548 |
| 165 | 165 | 0.402 |
| 166 | 166 | 0.433 |
| 167 | 167 | 0.0321 |
| 168 | 168 | 0.249 |
| 169 | 169 | 0.472 |
| 17 | 17 | 0.446 |
| 18 | 18 | 0.00109 |
| 19 | 19 | 0.492 |
| 2 | 2 | 0.172 |
| 20 | 20 | 0.305 |
| 21 | 21 | 0.0795 |
| 22 | 22 | 0.79 |
| 23 | 23 | 0.85 |
| 24 | 24 | 0.618 |
| 25 | 25 | 0.41 |
| 26 | 26 | 0.137 |
| 27 | 27 | 0.729 |
| 28 | 28 | 0.924 |
| 29 | 29 | 0.0137 |
| 3 | 3 | 0.147 |
| 30 | 30 | 0.0309 |
| 31 | 31 | 0.939 |
| 32 | 32 | 0.023 |
| 33 | 33 | 0.845 |
| 34 | 34 | 0.416 |
| 35 | 35 | 0.132 |
| 36 | 36 | 0.0226 |
| 37 | 37 | 0.305 |
| 38 | 38 | 0.757 |
| 39 | 39 | 0.213 |
| 4 | 4 | 0.217 |
| 40 | 40 | 0.313 |
| 41 | 41 | 0.0654 |
| 42 | 42 | 0.153 |
| 43 | 43 | 0.336 |
| 44 | 44 | 0.534 |
| 45 | 45 | 0.187 |
| 46 | 46 | 0.137 |
| 47 | 47 | 0.386 |
| 48 | 48 | 0.574 |
| 49 | 49 | 0.0514 |
| 5 | 5 | 0.417 |
| 50 | 50 | 0.779 |
| 51 | 51 | 0.402 |
| 52 | 52 | 0.0965 |
| 53 | 53 | 0.572 |
| 54 | 54 | 0.798 |
| 55 | 55 | 0.989 |
| 56 | 56 | 0.741 |
| 57 | 57 | 0.197 |
| 58 | 58 | 0.862 |
| 59 | 59 | 0.831 |
| 6 | 6 | 0.231 |
| 60 | 60 | 0.728 |
| 61 | 61 | 0.737 |
| 62 | 62 | 0.459 |
| 63 | 63 | 0.611 |
| 64 | 64 | 0.254 |
| 65 | 65 | 0.963 |
| 66 | 66 | 0.317 |
| 67 | 67 | 0.103 |
| 68 | 68 | 0.263 |
| 69 | 69 | 0.632 |
| 7 | 7 | 0.789 |
| 70 | 70 | 0.122 |
| 71 | 71 | 0.0219 |
| 72 | 72 | 0.833 |
| 73 | 73 | 0.775 |
| 74 | 74 | 0.614 |
| 75 | 75 | 0.0183 |
| 76 | 76 | 0.0125 |
| 77 | 77 | 0.0537 |
| 78 | 78 | 0.451 |
| 79 | 79 | 0.0451 |
| 8 | 8 | 0.418 |
| 80 | 80 | 0.103 |
| 81 | 81 | 0.262 |
| 82 | 82 | 0.878 |
| 83 | 83 | 0.991 |
| 84 | 84 | 0.326 |
| 85 | 85 | 0.682 |
| 86 | 86 | 0.571 |
| 87 | 87 | 0.648 |
| 88 | 88 | 0.753 |
| 89 | 89 | 0.855 |
| 9 | 9 | 0.517 |
| 90 | 90 | 0.549 |
| 91 | 91 | 0.373 |
| 92 | 92 | 0.678 |
| 93 | 93 | 0.273 |
| 94 | 94 | 0.0376 |
| 95 | 95 | 0.189 |
| 96 | 96 | 0.825 |
| 97 | 97 | 0.421 |
| 98 | 98 | 0.32 |
| 99 | 99 | 0.158 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10622
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010017 human kidney - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010017 (human kidney - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
