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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004742
|DRA_sample_Accession=CAGE@SAMD00004742
|accession_numbers=CAGE;DRX008703;DRR009575;DRZ001000;DRZ002385
|accession_numbers=CAGE;DRX008703;DRR009575;DRZ001000;DRZ002385;DRZ012350;DRZ013735
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 53: Line 53:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10072
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10072
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10072
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10072
|name=parietal lobe, fetal, donor1
|name=parietal lobe, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 100: Line 100:
|top_motifs=PRRX1,2:5.48113922263;NKX2-3_NKX2-5:5.03682855568;ALX1:4.82515652086;FOXM1:4.68891341839;MZF1:4.47588510544;ZNF384:4.46912599543;ADNP_IRX_SIX_ZHX:4.4300993401;POU1F1:4.34463211512;SOX2:4.24939440641;POU6F1:4.17888491512;POU5F1:4.15176562139;AHR_ARNT_ARNT2:4.12518254119;CDC5L:4.05489544248;POU3F1..4:3.86763322887;FOXP1:3.80764647948;FOXD3:3.68863742424;PRDM1:3.67801323158;MED-1{core}:3.62593655174;ZFP161:3.52814171931;BREu{core}:3.50593884401;RREB1:3.48424027147;OCT4_SOX2{dimer}:3.46644408924;CUX2:3.45820029218;NKX6-1,2:3.30326257489;IKZF2:3.18104902745;HMGA1,2:3.13283800361;TEF:3.09330461593;MTE{core}:3.07651632751;HOX{A4,D4}:3.05016490872;HOXA9_MEIS1:3.04287865165;PITX1..3:3.01917497553;SOX17:2.93324285617;GATA4:2.89628939918;EGR1..3:2.89171137905;PAX4:2.79225448076;TGIF1:2.68006161636;BPTF:2.66451056468;RFX1:2.64320401602;SOX{8,9,10}:2.61306292645;MYFfamily:2.59490433903;T:2.59154289042;LHX3,4:2.5159293736;TFDP1:2.45810948194;LEF1_TCF7_TCF7L1,2:2.44182350971;AIRE:2.39484178908;TFAP2B:2.38232346366;GTF2I:2.3463322899;NKX3-1:2.32672714638;PATZ1:2.30746712809;NHLH1,2:2.27924375354;REST:2.25696022342;DBP:2.2535020061;ZBTB16:2.23886268648;ATF2:2.23054881361;ARID5B:2.20837749126;EVI1:2.16972973514;TOPORS:2.08425514006;GFI1:2.05275319917;ONECUT1,2:1.96476796598;KLF4:1.93605779396;ZIC1..3:1.93502120558;GFI1B:1.9007399822;NRF1:1.89405457036;MAZ:1.89026289758;ZBTB6:1.87057766136;PAX5:1.79619778585;HIC1:1.68418871709;SOX5:1.68412062412;SMAD1..7,9:1.68334416003;FOXP3:1.66253982358;PAX8:1.65796971653;RBPJ:1.63926815144;CDX1,2,4:1.5824516504;NANOG:1.55292539289;FOXQ1:1.54241125286;TLX2:1.49587091305;LMO2:1.48928761238;STAT1,3:1.36204553189;GCM1,2:1.31110491127;PAX3,7:1.2842409166;ZNF143:1.19393339867;GZF1:1.16173362254;NKX2-1,4:1.09522081493;MTF1:1.07963751343;FOXN1:1.03929397186;PAX1,9:1.02393183996;RFX2..5_RFXANK_RFXAP:0.95349715054;HBP1_HMGB_SSRP1_UBTF:0.909139429968;NKX3-2:0.817059517377;JUN:0.806254365208;CRX:0.792760565961;UFEwm:0.749441886472;YY1:0.703347040381;PBX1:0.666345523746;RORA:0.657129540682;EP300:0.605407346973;SPZ1:0.583258455792;PAX6:0.523210070947;ATF5_CREB3:0.448136702572;FOXA2:0.420274810181;FOXL1:0.411913951963;XBP1:0.395731881746;CREB1:0.370614719098;POU2F1..3:0.360023218432;MAFB:0.298892206462;PDX1:0.295377799026;NFY{A,B,C}:0.263511824618;HMX1:0.262287448556;E2F1..5:0.221664192422;ZNF423:0.140259723974;FOX{F1,F2,J1}:0.094183968873;ATF4:0.055023056824;GTF2A1,2:0.0389590571926;GATA6:0.0105675499462;SP1:-0.0350037055493;DMAP1_NCOR{1,2}_SMARC:-0.0480851959981;VSX1,2:-0.0492001610356;MEF2{A,B,C,D}:-0.0535202789365;ELK1,4_GABP{A,B1}:-0.195563042061;MYOD1:-0.216592132813;XCPE1{core}:-0.222265200165;FOX{D1,D2}:-0.228624961048;HAND1,2:-0.278331418223;NR1H4:-0.349984020175;ZEB1:-0.37899109007;PAX2:-0.425692860123;MYBL2:-0.442357611797;FOX{I1,J2}:-0.492497825515;SPIB:-0.558906124153;NANOG{mouse}:-0.566483224602;HOX{A6,A7,B6,B7}:-0.602331555593;TLX1..3_NFIC{dimer}:-0.609207270376;HNF1A:-0.618779862619;ALX4:-0.636322022365;MYB:-0.681606768454;PPARG:-0.700461243184;SPI1:-0.702259363855;NR6A1:-0.737309891237;SNAI1..3:-0.762534294927;SREBF1,2:-0.774380801836;TBP:-0.779411134008;NR3C1:-0.803192818532;HIF1A:-0.817349858004;HOX{A5,B5}:-0.824902397844;NFATC1..3:-0.843191626519;TEAD1:-0.88251927842;HNF4A_NR2F1,2:-0.931723781711;IRF7:-0.948002536807;EBF1:-0.949912238327;FOXO1,3,4:-0.951270219137;STAT2,4,6:-0.957663235632;CEBPA,B_DDIT3:-0.985071733785;TAL1_TCF{3,4,12}:-1.07253392842;IRF1,2:-1.08182627104;ZNF238:-1.09004157482;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10084135525;STAT5{A,B}:-1.12204336878;RUNX1..3:-1.12362098586;NFKB1_REL_RELA:-1.18473411714;NFIX:-1.24749426882;FOS_FOS{B,L1}_JUN{B,D}:-1.2535938381;TFAP4:-1.26389691578;HSF1,2:-1.26556533528;TP53:-1.27355240246;IKZF1:-1.31614067289;GLI1..3:-1.33570825397;TFAP2{A,C}:-1.37217123274;FOSL2:-1.37776048818;bHLH_family:-1.39564369373;NFIL3:-1.40558096234;ETS1,2:-1.4349344641;NFE2L1:-1.44338908533;NFE2L2:-1.45167051367;BACH2:-1.45767294356;NFE2:-1.50437100209;AR:-1.52713996433;ESR1:-1.75757665916;ELF1,2,4:-1.78347302595;TBX4,5:-1.78841498005;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86776078309;HLF:-1.88112136177;NR5A1,2:-2.00106477961;TFCP2:-2.01336366179;RXR{A,B,G}:-2.05577686918;NKX2-2,8:-2.06811424432;ATF6:-2.07698155457;ZNF148:-2.11555643972;SRF:-2.11909144754;EN1,2:-2.15623899037;RXRA_VDR{dimer}:-2.17561240839;ESRRA:-2.3760359239;HES1:-2.50838929296
|top_motifs=PRRX1,2:5.48113922263;NKX2-3_NKX2-5:5.03682855568;ALX1:4.82515652086;FOXM1:4.68891341839;MZF1:4.47588510544;ZNF384:4.46912599543;ADNP_IRX_SIX_ZHX:4.4300993401;POU1F1:4.34463211512;SOX2:4.24939440641;POU6F1:4.17888491512;POU5F1:4.15176562139;AHR_ARNT_ARNT2:4.12518254119;CDC5L:4.05489544248;POU3F1..4:3.86763322887;FOXP1:3.80764647948;FOXD3:3.68863742424;PRDM1:3.67801323158;MED-1{core}:3.62593655174;ZFP161:3.52814171931;BREu{core}:3.50593884401;RREB1:3.48424027147;OCT4_SOX2{dimer}:3.46644408924;CUX2:3.45820029218;NKX6-1,2:3.30326257489;IKZF2:3.18104902745;HMGA1,2:3.13283800361;TEF:3.09330461593;MTE{core}:3.07651632751;HOX{A4,D4}:3.05016490872;HOXA9_MEIS1:3.04287865165;PITX1..3:3.01917497553;SOX17:2.93324285617;GATA4:2.89628939918;EGR1..3:2.89171137905;PAX4:2.79225448076;TGIF1:2.68006161636;BPTF:2.66451056468;RFX1:2.64320401602;SOX{8,9,10}:2.61306292645;MYFfamily:2.59490433903;T:2.59154289042;LHX3,4:2.5159293736;TFDP1:2.45810948194;LEF1_TCF7_TCF7L1,2:2.44182350971;AIRE:2.39484178908;TFAP2B:2.38232346366;GTF2I:2.3463322899;NKX3-1:2.32672714638;PATZ1:2.30746712809;NHLH1,2:2.27924375354;REST:2.25696022342;DBP:2.2535020061;ZBTB16:2.23886268648;ATF2:2.23054881361;ARID5B:2.20837749126;EVI1:2.16972973514;TOPORS:2.08425514006;GFI1:2.05275319917;ONECUT1,2:1.96476796598;KLF4:1.93605779396;ZIC1..3:1.93502120558;GFI1B:1.9007399822;NRF1:1.89405457036;MAZ:1.89026289758;ZBTB6:1.87057766136;PAX5:1.79619778585;HIC1:1.68418871709;SOX5:1.68412062412;SMAD1..7,9:1.68334416003;FOXP3:1.66253982358;PAX8:1.65796971653;RBPJ:1.63926815144;CDX1,2,4:1.5824516504;NANOG:1.55292539289;FOXQ1:1.54241125286;TLX2:1.49587091305;LMO2:1.48928761238;STAT1,3:1.36204553189;GCM1,2:1.31110491127;PAX3,7:1.2842409166;ZNF143:1.19393339867;GZF1:1.16173362254;NKX2-1,4:1.09522081493;MTF1:1.07963751343;FOXN1:1.03929397186;PAX1,9:1.02393183996;RFX2..5_RFXANK_RFXAP:0.95349715054;HBP1_HMGB_SSRP1_UBTF:0.909139429968;NKX3-2:0.817059517377;JUN:0.806254365208;CRX:0.792760565961;UFEwm:0.749441886472;YY1:0.703347040381;PBX1:0.666345523746;RORA:0.657129540682;EP300:0.605407346973;SPZ1:0.583258455792;PAX6:0.523210070947;ATF5_CREB3:0.448136702572;FOXA2:0.420274810181;FOXL1:0.411913951963;XBP1:0.395731881746;CREB1:0.370614719098;POU2F1..3:0.360023218432;MAFB:0.298892206462;PDX1:0.295377799026;NFY{A,B,C}:0.263511824618;HMX1:0.262287448556;E2F1..5:0.221664192422;ZNF423:0.140259723974;FOX{F1,F2,J1}:0.094183968873;ATF4:0.055023056824;GTF2A1,2:0.0389590571926;GATA6:0.0105675499462;SP1:-0.0350037055493;DMAP1_NCOR{1,2}_SMARC:-0.0480851959981;VSX1,2:-0.0492001610356;MEF2{A,B,C,D}:-0.0535202789365;ELK1,4_GABP{A,B1}:-0.195563042061;MYOD1:-0.216592132813;XCPE1{core}:-0.222265200165;FOX{D1,D2}:-0.228624961048;HAND1,2:-0.278331418223;NR1H4:-0.349984020175;ZEB1:-0.37899109007;PAX2:-0.425692860123;MYBL2:-0.442357611797;FOX{I1,J2}:-0.492497825515;SPIB:-0.558906124153;NANOG{mouse}:-0.566483224602;HOX{A6,A7,B6,B7}:-0.602331555593;TLX1..3_NFIC{dimer}:-0.609207270376;HNF1A:-0.618779862619;ALX4:-0.636322022365;MYB:-0.681606768454;PPARG:-0.700461243184;SPI1:-0.702259363855;NR6A1:-0.737309891237;SNAI1..3:-0.762534294927;SREBF1,2:-0.774380801836;TBP:-0.779411134008;NR3C1:-0.803192818532;HIF1A:-0.817349858004;HOX{A5,B5}:-0.824902397844;NFATC1..3:-0.843191626519;TEAD1:-0.88251927842;HNF4A_NR2F1,2:-0.931723781711;IRF7:-0.948002536807;EBF1:-0.949912238327;FOXO1,3,4:-0.951270219137;STAT2,4,6:-0.957663235632;CEBPA,B_DDIT3:-0.985071733785;TAL1_TCF{3,4,12}:-1.07253392842;IRF1,2:-1.08182627104;ZNF238:-1.09004157482;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10084135525;STAT5{A,B}:-1.12204336878;RUNX1..3:-1.12362098586;NFKB1_REL_RELA:-1.18473411714;NFIX:-1.24749426882;FOS_FOS{B,L1}_JUN{B,D}:-1.2535938381;TFAP4:-1.26389691578;HSF1,2:-1.26556533528;TP53:-1.27355240246;IKZF1:-1.31614067289;GLI1..3:-1.33570825397;TFAP2{A,C}:-1.37217123274;FOSL2:-1.37776048818;bHLH_family:-1.39564369373;NFIL3:-1.40558096234;ETS1,2:-1.4349344641;NFE2L1:-1.44338908533;NFE2L2:-1.45167051367;BACH2:-1.45767294356;NFE2:-1.50437100209;AR:-1.52713996433;ESR1:-1.75757665916;ELF1,2,4:-1.78347302595;TBX4,5:-1.78841498005;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86776078309;HLF:-1.88112136177;NR5A1,2:-2.00106477961;TFCP2:-2.01336366179;RXR{A,B,G}:-2.05577686918;NKX2-2,8:-2.06811424432;ATF6:-2.07698155457;ZNF148:-2.11555643972;SRF:-2.11909144754;EN1,2:-2.15623899037;RXRA_VDR{dimer}:-2.17561240839;ESRRA:-2.3760359239;HES1:-2.50838929296
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10072-101I9;search_select_hide=table117:FF:10072-101I9
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:parietal lobe, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11782
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueparietal lobe
dev stage20 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA601609
catalog numberCat:RtHFN: Brain parietal lobe
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004742
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11782 CAGE DRX008703 DRR009575
Accession ID Hg19

Library idBAMCTSS
CNhs11782 DRZ001000 DRZ002385
Accession ID Hg38

Library idBAMCTSS
CNhs11782 DRZ012350 DRZ013735
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.989
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0428
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.125
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.189
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.321
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.189
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.189
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.189
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.467
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.143
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain1.035
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0209
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.321
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.321
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.321
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.964
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0126
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.993
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.811
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.349
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.189
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.504
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11782

Jaspar motifP-value
MA0002.20.00237
MA0003.10.162
MA0004.10.419
MA0006.10.215
MA0007.10.139
MA0009.10.447
MA0014.10.577
MA0017.10.00137
MA0018.20.249
MA0019.10.147
MA0024.10.0576
MA0025.10.0465
MA0027.10.498
MA0028.10.357
MA0029.10.116
MA0030.10.373
MA0031.10.0338
MA0035.20.0119
MA0038.10.208
MA0039.20.0897
MA0040.10.539
MA0041.10.367
MA0042.10.53
MA0043.10.639
MA0046.10.0219
MA0047.20.002
MA0048.10.678
MA0050.11.22575e-4
MA0051.10.00661
MA0052.10.17
MA0055.10.0817
MA0057.10.251
MA0058.10.268
MA0059.10.204
MA0060.10.178
MA0061.10.0177
MA0062.20.0443
MA0065.22.54589e-4
MA0066.10.0156
MA0067.10.789
MA0068.10.485
MA0069.10.432
MA0070.10.485
MA0071.10.0362
MA0072.10.249
MA0073.10.27
MA0074.10.158
MA0076.10.614
MA0077.10.262
MA0078.10.732
MA0079.20.694
MA0080.22.56919e-11
MA0081.10.0512
MA0083.10.00672
MA0084.10.672
MA0087.10.237
MA0088.10.235
MA0090.10.194
MA0091.10.231
MA0092.10.299
MA0093.10.416
MA0099.25.73612e-23
MA0100.10.938
MA0101.10.00833
MA0102.20.00925
MA0103.10.171
MA0104.20.743
MA0105.10.0173
MA0106.10.0667
MA0107.10.0081
MA0108.20.224
MA0111.10.819
MA0112.21.53311e-4
MA0113.10.0363
MA0114.10.00491
MA0115.10.463
MA0116.10.0231
MA0117.10.806
MA0119.10.174
MA0122.10.27
MA0124.10.709
MA0125.10.296
MA0131.10.617
MA0135.10.652
MA0136.11.04131e-13
MA0137.20.124
MA0138.20.706
MA0139.10.268
MA0140.10.00119
MA0141.10.0022
MA0142.10.569
MA0143.10.466
MA0144.10.0617
MA0145.10.0861
MA0146.10.0145
MA0147.10.633
MA0148.10.0162
MA0149.10.0144
MA0150.11.42916e-5
MA0152.10.298
MA0153.10.317
MA0154.10.0264
MA0155.10.437
MA0156.17.73699e-8
MA0157.10.0338
MA0159.10.00214
MA0160.10.00402
MA0162.10.217
MA0163.15.67103e-4
MA0164.10.892
MA0258.10.00559
MA0259.10.832



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11782

Novel motifP-value
10.0913
100.138
1000.608
1010.62
1020.857
1030.0509
1040.0913
1050.144
1060.0295
1070.0954
1080.868
1094.41781e-4
110.0397
1100.17
1110.388
1120.249
1130.329
1140.075
1150.947
1160.239
1170.0322
1180.268
1190.35
120.506
1200.282
1210.333
1220.496
1230.0991
1240.317
1250.46
1260.0193
1270.179
1280.18
1290.348
130.00632
1300.0511
1310.646
1320.771
1330.298
1340.808
1350.699
1360.00528
1370.266
1380.866
1390.0711
140.68
1400.405
1410.57
1420.802
1430.0124
1440.846
1450.368
1460.392
1470.7
1480.026
1490.124
150.113
1500.249
1510.39
1520.0346
1530.813
1540.538
1550.783
1560.43
1570.444
1580.381
1590.105
160.0323
1600.241
1610.208
1620.445
1630.583
1640.116
1650.219
1660.813
1670.995
1680.0885
1690.0105
170.096
180.167
190.121
20.471
200.534
210.231
220.0793
230.204
240.0139
250.411
260.0263
270.412
280.747
290.0645
30.0804
300.58
310.578
320.0428
330.144
340.472
350.619
360.219
370.0164
380.239
390.249
40.93
400.0395
410.235
420.236
430.121
440.211
450.478
460.245
470.101
480.108
490.219
50.317
500.318
510.325
520.32
530.963
540.255
550.934
560.4
570.675
580.274
590.0245
60.929
600.0583
610.0559
620.189
630.144
640.472
650.172
660.292
670.73
680.0994
690.747
70.0709
700.0367
710.0273
720.157
730.0124
740.902
750.0565
760.593
770.082
780.0179
790.443
80.12
800.115
810.601
820.359
830.00917
840.902
850.0869
860.255
872.05066e-4
880.769
890.15
90.252
900.394
910.924
920.299
930.481
940.148
950.00719
960.345
970.76
980.268
990.562



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11782


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010072 (human parietal lobe - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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