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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004877
|DRA_sample_Accession=CAGE@SAMD00004877
|accession_numbers=CAGE;DRX008675;DRR009547;DRZ000972;DRZ002357
|accession_numbers=CAGE;DRX008675;DRR009547;DRZ000972;DRZ002357;DRZ012322;DRZ013707
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|def=
|def=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.58!3780.42!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.73!537.98!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.35!221.29!SEBOX;;chr1:27240455..27240474,-!p1@NR0B2!2.14!137.81!NR0B2;;chr19:12998003..12998021,-!p1@KLF1!2.08!120.58!KLF1;;chr19:50432453..50432468,+!p1@ATF5!2.03!5496.39!ATF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!107.33!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!1.98!95.40!MBNL3;;chrX:48644984..48645005,+!p1@GATA1!1.95!88.78!GATA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.95!87.45!CREB3L3;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!125.88!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!1.89!306.09!CEBPA;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.06!PROX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.86!71.55!MLXIPL;;chrX:131547596..131547609,-!p10@MBNL3!1.82!64.93!MBNL3;;chr19:46367576..46367592,+!p1@FOXA3!1.76!56.98!FOXA3;;chr12:54689532..54689551,-!p4@NFE2!1.70!49.03!NFE2;;chr12:100867627..100867652,+!p1@NR1H4!1.65!43.73!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.61!39.75!NR1H4;;chr19:46800289..46800327,+!p2@HIF3A!1.60!38.43!HIF3A;;chr1:199996733..199996781,+!p1@NR5A2!1.60!38.43!NR5A2;;chr12:54694758..54694805,-!p1@NFE2!1.56!42.40!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.45!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.50!30.48!GFI1B;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.15!TAL1;;chr12:54694807..54694832,-!p3@NFE2!1.48!29.15!NFE2;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.10!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.46!34.45!KLF15;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.18!HAND2;;chr19:54041669..54041697,+!p2@ZNF331!1.42!25.18!ZNF331;;chr20:43029862..43029900,+!p1@HNF4A!1.42!25.18!HNF4A;;chr16:85932760..85932775,+!p1@IRF8!1.42!25.18!IRF8;;chr20:50159198..50159299,-!p1@NFATC2!1.41!35.78!NFATC2;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!23.85!ONECUT1;;chr3:126073018..126073036,-!p3@KLF15!1.40!23.85!KLF15;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.85!SPI1;;chr1:201979743..201979762,+!p1@ELF3!1.37!22.53!ELF3;;chr10:94449703..94449718,+!p1@HHEX!1.36!82.15!HHEX;;chr11:16133391..16133439,-!p6@SOX6!1.35!21.20!SOX6;;chr11:47400062..47400077,-!p2@SPI1!1.35!21.20!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.29!41.08!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!1.29!19.88!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.55!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.55!ELF3;;chr1:47697881..47697910,-!p4@TAL1!1.26!17.23!TAL1;;chr12:54689552..54689574,-!p6@NFE2!1.26!17.23!NFE2;;chr15:61521495..61521506,-!p5@RORA!1.26!17.23!RORA;;chr17:26694979..26695007,-!p4@SEBOX!1.23!15.90!SEBOX;;chr1:199996702..199996732,+!p5@NR5A2!1.23!15.90!NR5A2;;chr16:79634624..79634642,-!p1@MAF!1.21!59.63!MAF;;chr8:71316403..71316427,-!p6@NCOA2!1.19!17.23!NCOA2;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.58!ZNF331;;chr1:151804244..151804310,-!p1@RORC!1.19!14.58!RORC;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.58!FOXA1;;chr2:68592406..68592424,+!p1@PLEK!1.19!14.58!PLEK;;chr3:126076264..126076305,-!p2@KLF15!1.18!19.88!KLF15;;chr16:79634595..79634620,-!p2@MAF!1.17!25.18!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.88!ZBTB16;;chr1:23857325..23857416,-!p2@E2F2!1.16!15.90!E2F2;;chrX:48644976..48644983,+!p2@GATA1!1.15!13.25!GATA1;;chr8:76319876..76319926,+!p1@HNF4G!1.15!13.25!HNF4G;;chr11:47279504..47279563,+!p1@NR1H3!1.14!29.15!NR1H3;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1562.26!CEBPD;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.50!C11orf9;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.93!HIF3A;;chr20:48808064..48808086,+!p15@CEBPB!1.11!11.93!CEBPB;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.93!ONECUT2;;chr15:60884706..60884743,-!p1@RORA!1.09!58.30!RORA;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.93!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!1.07!45.05!MBNL3;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.48!EPAS1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.88!E2F2;;chr22:29196547..29196563,-!p2@XBP1!1.06!390.90!XBP1;;chr12:54778471..54778528,-!p1@ZNF385A!1.06!10.60!ZNF385A;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.60!TCF21;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.60!IKZF1;;chr8:11561684..11561751,+!p1@GATA4!1.06!10.60!GATA4;;chr19:46806868..46806883,+!p3@HIF3A!1.06!10.60!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.60!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.06!10.60!HNF4A;;chr20:43030002..43030028,+!p3@HNF4A!1.06!10.60!HNF4A;;chr22:29196492..29196503,-!p3@XBP1!1.05!15.90!XBP1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.58!GATA6;;chr14:35873101..35873119,-!p6@NFKBIA!1.04!13.25!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!263.69!TSC22D3;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.28!ONECUT2;;chr20:48809000..48809053,+!p12@CEBPB!1.00!11.93!CEBPB;;chr5:176738887..176738934,-!p1@MXD3!0.99!59.63!MXD3;;chr19:50435736..50435781,+!p3@ATF5!0.98!11.93!ATF5;;chr8:37963466..37963506,+!p3@ASH2L!0.97!10.60!ASH2L;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.95!NCOA7;;chr7:73038867..73038878,-!p2@MLXIPL!0.95!7.95!MLXIPL;;chr17:53344945..53344977,+!p2@HLF!0.95!7.95!HLF;;chr19:13213555..13213568,-!p5@LYL1!0.95!7.95!LYL1;;chr2:68592394..68592405,+!p2@PLEK!0.95!7.95!PLEK;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.95!HAND2;;chr1:161207986..161207998,-!p2@NR1I3!0.95!7.95!NR1I3;;chr1:199996831..199996843,+!p4@NR5A2!0.95!7.95!NR5A2;;chr1:47697965..47697991,-!p7@TAL1!0.95!7.95!TAL1;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.95!GATA5;;chr21:39870339..39870443,-!p1@ERG!0.95!7.95!ERG;;chr11:19263160..19263176,-!p1@E2F8!0.94!9.28!E2F8;;chr8:81398444..81398472,+!p1@ZBTB10!0.93!31.80!ZBTB10;;chr17:1959369..1959388,+!p2@HIC1!0.92!19.88!HIC1;;chrX:131622958..131622978,-!p3@MBNL3!0.92!9.28!MBNL3;;chr21:40177845..40177863,+!p1@ETS2!0.91!445.22!ETS2;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.58!ZBED3;;chr8:71316428..71316459,-!p2@NCOA2!0.90!11.93!NCOA2;;chr17:53342311..53342400,+!p1@HLF!0.90!7.95!HLF;;chr1:212782094..212782109,+!p1@ATF3!0.89!193.46!ATF3;;chr3:187463179..187463201,-!p2@BCL6!0.89!29.15!BCL6;;chr3:24536253..24536328,-!p1@THRB!0.89!13.25!THRB;;chr2:157189180..157189290,-!p1@NR4A2!0.88!35.78!NR4A2;;chr14:73360799..73360817,-!p1@DPF3!0.88!23.85!DPF3;;chr2:74229812..74229867,+!p1@TET3!0.88!17.23!TET3;;chr3:24536485..24536500,-!p3@THRB!0.88!6.63!THRB;;chr11:16403882..16403908,-!p9@SOX6!0.88!6.63!SOX6;;chr12:101869096..101869118,+!p1@SPIC!0.88!6.63!SPIC;;chr12:121416340..121416360,+!p1@HNF1A!0.88!6.63!HNF1A;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.63!FOXQ1;;chr7:73038889..73038905,-!p3@MLXIPL!0.88!6.63!MLXIPL;;chr19:50435673..50435690,+!p8@ATF5!0.88!6.63!ATF5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.88!6.63!ZSCAN1;;chr1:161208013..161208038,-!p1@NR1I3!0.88!6.63!NR1I3;;chr1:214161358..214161377,+!p3@PROX1!0.88!6.63!PROX1;;chr1:47696918..47696935,-!p6@TAL1!0.88!6.63!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.88!6.63!GFI1;;chr9:137218281..137218340,+!p1@RXRA!0.87!190.81!RXRA;;chr12:52445218..52445237,+!p1@NR4A1!0.87!86.13!NR4A1;;chr13:72441315..72441454,-!p1@DACH1!0.87!13.25!DACH1;;chr6:7108179..7108199,+!p4@RREB1!0.86!13.25!RREB1;;chr11:113930291..113930339,+!p2@ZBTB16!0.86!10.60!ZBTB16;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.95!L3MBTL4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.90!PPARG;;chr19:13213662..13213686,-!p1@LYL1!0.85!9.28!LYL1;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.43!MAFF;;chr22:46546494..46546525,+!p2@PPARA!0.84!11.93!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!0.84!10.60!FOXP2;;chr2:239148671..239148686,-!p1@HES6!0.83!22.53!HES6;;chrX:131624056..131624069,-!p2@MBNL3!0.83!7.95!MBNL3;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.63!TCF4;;chr20:2673383..2673441,+!p1@EBF4!0.82!9.28!EBF4;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.58!NFKBIA;;chr9:94186085..94186096,-!p3@NFIL3!0.81!9.28!NFIL3;;chr19:926001..926046,+!p1@ARID3A!0.80!19.88!ARID3A;;chrX:66763856..66763896,+!p1@AR!0.80!7.95!AR;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.30!ZFY;;chr9:135854074..135854089,+!p2@GFI1B!0.80!5.30!GFI1B;;chrX:131540410..131540438,-!p13@MBNL3!0.80!5.30!MBNL3;;chrX:48645010..48645015,+!p3@GATA1!0.80!5.30!GATA1;;chrX:131623026..131623039,-!p5@MBNL3!0.80!5.30!MBNL3;;chr11:16133375..16133390,-!p19@SOX6!0.80!5.30!SOX6;;chr11:16403910..16403933,-!p12@SOX6!0.80!5.30!SOX6;;chr7:97840743..97840786,+!p1@BHLHA15!0.80!5.30!BHLHA15;;chr8:28244374..28244382,-!p26@ZNF395!0.80!5.30!ZNF395;;chr19:54041574..54041589,+!p6@ZNF331!0.80!5.30!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!0.80!5.30!HEYL;;chr1:42801540..42801562,-!p4@FOXJ3!0.80!5.30!FOXJ3;;chr1:47698007..47698019,-!p13@TAL1!0.80!5.30!TAL1;;chr20:62365987..62365998,+!p8@ZGPAT!0.80!5.30!ZGPAT;;chr17:6926362..6926377,+!p1@BCL6B!0.80!5.30!BCL6B;;chr19:13213634..13213645,-!p8@LYL1!0.80!5.30!LYL1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.55!FOXP1;;chr16:86544113..86544145,+!p1@FOXF1!0.79!6.63!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.78!769.87!ID2;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.10!FOXO1;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.58!HHEX;;chr5:76383070..76383117,-!p3@ZBED3!0.78!10.60!ZBED3;;chr11:695731..695765,-!p5@DEAF1!0.78!6.63!DEAF1;;chr3:71179699..71179744,-!p2@FOXP1!0.77!39.75!FOXP1;;chr15:96873984..96873999,+!p3@NR2F2!0.77!39.75!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.77!33.13!SREBF1;;chr3:12329397..12329433,+!p2@PPARG!0.77!11.93!PPARG;;chr2:10091815..10091864,+!p1@GRHL1!0.77!6.63!GRHL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.25!ZFPM2;;chr22:29196433..29196445,-!p4@XBP1!0.76!5.30!XBP1;;chr13:41240737..41240787,-!p1@FOXO1!0.75!60.95!FOXO1;;chr2:10183651..10183713,+!p1@KLF11!0.75!37.10!KLF11;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.48!MYBL2;;chr19:4067039..4067064,-!p3@ZBTB7A!0.75!14.58!ZBTB7A;;chr4:38665769..38665801,+!p2@KLF3!0.73!43.73!KLF3;;chr19:17356436..17356481,-!p3@NR2F6!0.73!7.95!NR2F6;;chr20:6748325..6748352,+!p1@BMP2!0.73!6.63!BMP2;;chr6:7108210..7108221,+!p7@RREB1!0.73!5.30!RREB1;;chr6:91006575..91006602,-!p2@BACH2!0.72!6.63!BACH2;;chr8:28243813..28243839,-!p4@ZNF395!0.71!7.95!ZNF395;;chr19:56111614..56111634,+!p3@ZNF524!0.71!6.63!ZNF524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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.ctss.bed.gz
|id=FF:10086-102B5
|id=FF:10086-102B5
|is_a=EFO:0002091;;FF:0010086
|is_a=EFO:0002091;;FF:0010086
Line 46: Line 52:
|library_id=CNhs11798
|library_id=CNhs11798
|library_id_phase_based=2:CNhs11798
|library_id_phase_based=2:CNhs11798
|name="liver, fetal, pool1"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10086
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10086
|name=liver, fetal, pool1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11798,LSID820,release009,COMPLETED"
|profile_hcage=CNhs11798,LSID820,release009,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10086-102B5;search_select_hide=table117:FF:10086-102B5
}}
}}

Latest revision as of 12:21, 3 June 2020

Name:liver, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11798
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stage22-40 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-6
catalog numberCat: 636643 Lot: 8101369A-6
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004877
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11798 CAGE DRX008675 DRR009547
Accession ID Hg19

Library idBAMCTSS
CNhs11798 DRZ000972 DRZ002357
Accession ID Hg38

Library idBAMCTSS
CNhs11798 DRZ012322 DRZ013707
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.178
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.00625
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small1.346
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0826
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.418
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0587
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.365
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.562
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.42
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.154
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.983
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.194
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.361
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.204
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.366
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0.366
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.562
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11798

Jaspar motifP-value
MA0002.20.647
MA0003.10.0476
MA0004.10.439
MA0006.10.118
MA0007.10.0092
MA0009.10.36
MA0014.10.336
MA0017.12.07006e-20
MA0018.20.506
MA0019.10.468
MA0024.10.819
MA0025.10.314
MA0027.10.988
MA0028.12.27048e-5
MA0029.10.0847
MA0030.10.00835
MA0031.10.0315
MA0035.27.30161e-15
MA0038.10.464
MA0039.20.178
MA0040.10.749
MA0041.10.187
MA0042.10.662
MA0043.10.48
MA0046.11.10993e-86
MA0047.25.65882e-5
MA0048.10.343
MA0050.10.157
MA0051.10.0355
MA0052.10.0763
MA0055.10.958
MA0057.10.449
MA0058.10.442
MA0059.10.348
MA0060.10.075
MA0061.10.26
MA0062.23.35318e-8
MA0065.22.67848e-9
MA0066.10.0402
MA0067.10.14
MA0068.10.299
MA0069.10.469
MA0070.10.25
MA0071.10.0439
MA0072.10.0465
MA0073.10.913
MA0074.10.625
MA0076.12.24788e-6
MA0077.10.713
MA0078.10.82
MA0079.20.455
MA0080.20.0158
MA0081.10.274
MA0083.10.876
MA0084.10.772
MA0087.10.998
MA0088.10.241
MA0090.10.549
MA0091.10.214
MA0092.10.348
MA0093.10.412
MA0099.21.08741e-4
MA0100.10.917
MA0101.10.154
MA0102.20.78
MA0103.10.0437
MA0104.20.823
MA0105.10.651
MA0106.10.722
MA0107.10.0696
MA0108.22.5352e-20
MA0111.10.871
MA0112.26.10911e-4
MA0113.10.101
MA0114.15.11278e-20
MA0115.17.13072e-6
MA0116.10.0359
MA0117.10.601
MA0119.10.58
MA0122.10.502
MA0124.10.946
MA0125.10.208
MA0131.10.469
MA0135.10.217
MA0136.14.38163e-4
MA0137.20.121
MA0138.20.0838
MA0139.10.779
MA0140.11.33827e-18
MA0141.17.25808e-4
MA0142.10.126
MA0143.10.812
MA0144.10.0157
MA0145.10.196
MA0146.10.0143
MA0147.10.981
MA0148.10.00185
MA0149.10.949
MA0150.10.951
MA0152.10.0177
MA0153.11.0556e-41
MA0154.10.1
MA0155.10.0391
MA0156.14.46873e-4
MA0157.10.131
MA0159.10.013
MA0160.10.00818
MA0162.10.258
MA0163.10.293
MA0164.10.488
MA0258.10.00109
MA0259.10.486



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11798

Novel motifP-value
10.464
100.879
1000.253
1010.372
1020.209
1030.185
1040.153
1050.303
1060.00347
1070.0209
1080.606
1090.185
110.113
1100.686
1110.962
1120.174
1135.36455e-4
1140.289
1150.628
1160.493
1170.734
1180.401
1190.0983
120.789
1200.499
1210.581
1220.959
1230.312
1240.468
1250.497
1260.199
1270.822
1280.101
1290.559
130.193
1300.0344
1310.42
1320.265
1330.506
1340.515
1350.892
1360.49
1370.336
1380.995
1390.24
140.849
1400.704
1410.0406
1420.231
1430.0633
1440.459
1450.189
1460.339
1470.413
1480.363
1490.238
150.632
1500.748
1510.306
1520.0478
1530.685
1540.364
1550.0473
1560.9
1570.695
1580.729
1590.969
160.272
1600.0134
1610.971
1620.197
1630.437
1640.654
1650.0628
1660.705
1670.757
1680.388
1690.0199
170.355
180.93
190.0126
20.239
200.688
210.255
220.0596
230.114
240.793
250.621
260.307
270.64
280.663
290.712
30.576
300.332
310.303
320.0184
330.56
340.222
350.891
360.359
370.965
380.309
390.278
40.522
400.0064
410.415
420.949
430.152
446.86838e-4
450.0976
460.183
470.544
480.283
490.134
50.575
500.504
510.635
520.0436
530.794
540.402
550.519
560.462
570.81
580.43
590.0463
60.663
600.0203
610.631
620.315
630.479
640.27
650.102
660.605
670.222
680.767
690.155
70.0278
700.0553
710.291
720.668
730.0838
740.163
750.486
760.549
770.0496
780.078
790.957
80.224
800.784
810.978
820.657
830.759
840.276
850.232
860.848
870.656
880.584
890.287
90.479
900.745
910.278
920.214
930.528
940.302
950.557
960.149
970.475
980.736
990.139



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11798


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010086 (human liver - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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