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(Created page with "{{f5samples |id=FF:10093-102C3 |name=salivary gland, adult, pool1 |sample_id=10093 |rna_tube_id=102C3 |rna_box=102 |rna_position=C3 |sample_cell_lot=NA |sample_cell_ca...")
 
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{{f5samples
{{f5samples
|id=FF:10093-102C3
|DRA_sample_Accession=CAGE@SAMD00005188
|name=salivary gland, adult, pool1
|accession_numbers=CAGE;DRX008717;DRR009589;DRZ001014;DRZ002399;DRZ012364;DRZ013749
|sample_id=10093
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001044,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330
|rna_tube_id=102C3
|rna_box=102
|rna_position=C3
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number= 8101369A-13
|rna_catalog_number=Cat: 636643 Lot: 8101369A-13
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=16-60 years old adult
|sample_tissue=salivary gland
|sample_donor(cell lot)=24 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs11677,LSID808,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000167,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001044,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0002050,UBERON:0002530,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003293,UBERON:0003294,UBERON:0003408,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007023,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010093
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.68!480.56!EHF;;chr2:122042770..122042785,-!p1@TFCP2L1!2.42!260.72!TFCP2L1;;chr22:38380543..38380569,-!p1@SOX10!2.31!201.35!SOX10;;chr11:34535297..34535317,-!p1@ELF5!2.27!186.72!ELF5;;chr11:129245526..129245553,+!p1@BARX2!2.25!175.10!BARX2;;chr7:97840743..97840786,+!p1@BHLHA15!2.17!147.14!BHLHA15;;chr17:80797886..80797906,-!p1@ZNF750!2.16!144.56!ZNF750;;chr14:37131058..37131139,+!p1@PAX9!2.08!117.88!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!2.05!112.29!SPDEF;;chr6:34524049..34524089,-!p2@SPDEF!2.05!111.43!SPDEF;;chr11:34535332..34535347,-!p2@ELF5!2.02!103.68!ELF5;;chr22:29196433..29196445,-!p4@XBP1!2.01!112.29!XBP1;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.38!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.94!85.62!EHF;;chr7:14028488..14028516,-!p2@ETV1!1.92!90.35!ETV1;;chr6:1312325..1312340,+!p1@FOXQ1!1.82!104.12!FOXQ1;;chr1:151804244..151804310,-!p1@RORC!1.75!54.64!RORC;;chr11:34642656..34642667,+!p2@EHF!1.67!46.03!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.66!67.55!XBP1;;chr14:61116183..61116208,-!p1@SIX1!1.65!161.34!SIX1;;chr2:19558373..19558392,-!p1@OSR1!1.59!99.81!OSR1;;chr12:52445218..52445237,+!p1@NR4A1!1.57!432.38!NR4A1;;chr1:209979467..209979494,-!p1@IRF6!1.56!39.15!IRF6;;chr11:111249993..111250006,-!p1@POU2AF1!1.54!33.56!POU2AF1;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.69!IRX2;;chr1:201979703..201979721,+!p2@ELF3!1.44!26.67!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.43!25.81!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.41!30.98!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.71!PITX1;;chr17:53342311..53342400,+!p1@HLF!1.36!24.95!HLF;;chr10:102891048..102891078,+!p1@TLX1!1.34!21.08!TLX1;;chr12:52449834..52449859,+!p16@NR4A1!1.34!21.08!NR4A1;;chr17:38256799..38256815,-!p3@NR1D1!1.33!36.14!NR1D1;;chr6:391743..391759,+!p1@IRF4!1.33!20.22!IRF4;;chr9:129376233..129376251,+!p2@LMX1B!1.33!20.22!LMX1B;;chr1:10754477..10754517,-!p1@CASZ1!1.32!33.13!CASZ1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.32!19.79!PEG3;;chr6:1610293..1610310,+!p1@FOXC1!1.31!32.27!FOXC1;;chr22:29196547..29196563,-!p2@XBP1!1.30!677.61!XBP1;;chr22:29196030..29196075,-!p5@XBP1!1.29!23.66!XBP1;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.37!TFAP2A;;chr1:217251619..217251658,-!p6@ESRRG!1.29!18.50!ESRRG;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.07!KDM5D;;chr19:13135582..13135600,+!p3@NFIX!1.28!18.07!NFIX;;chr11:129245736..129245758,+!p2@BARX2!1.28!18.07!BARX2;;chr4:149363475..149363492,-!p2@NR3C2!1.28!18.07!NR3C2;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.26!TFAP2A;;chr7:14026022..14026044,-!p7@ETV1!1.26!17.21!ETV1;;chr22:41763452..41763466,+!p2@TEF!1.26!17.21!TEF;;chr6:34524025..34524045,-!p3@SPDEF!1.24!16.35!SPDEF;;chr14:37126765..37126799,+!p2@PAX9!1.24!16.35!PAX9;;chr2:157189180..157189290,-!p1@NR4A2!1.21!77.87!NR4A2;;chr4:149363494..149363543,-!p1@NR3C2!1.21!15.06!NR3C2;;chr1:217250308..217250349,-!p9@ESRRG!1.21!15.06!ESRRG;;chr17:38256822..38256851,-!p1@NR1D1!1.20!115.73!NR1D1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr3:126076242..126076257,-!p1@KLF15!1.19!18.07!KLF15;;chr3:114819101..114819121,-!p7@ZBTB20!1.19!14.63!ZBTB20;;chr8:102504651..102504683,+!p1@GRHL2!1.19!14.63!GRHL2;;chr5:2751785..2751808,-!p2@IRX2!1.18!14.20!IRX2;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.28!ETV1;;chr13:37446984..37446995,-!p13@SMAD9!1.17!13.77!SMAD9;;chr9:14180778..14180808,-!p15@NFIB!1.16!13.34!NFIB;;chr2:45236540..45236577,-!p1@SIX2!1.16!13.34!SIX2;;chr17:80797863..80797874,-!p2@ZNF750!1.16!13.34!ZNF750;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.52!SOX9;;chr19:49140609..49140643,-!p1@DBP!1.14!72.71!DBP;;chr1:153940716..153940739,+!p4@CREB3L4!1.14!12.91!CREB3L4;;chr1:61548069..61548102,+!p3@NFIA!1.13!30.12!NFIA;;chr20:62680984..62680999,-!p1@SOX18!1.13!16.78!SOX18;;chr10:8096631..8096660,+!p1@GATA3!1.13!15.06!GATA3;;chr9:129376201..129376225,+!p1@LMX1B!1.13!12.48!LMX1B;;chrX:107018836..107018862,-!p8@TSC22D3!1.12!12.05!TSC22D3;;chr16:85932760..85932775,+!p1@IRF8!1.12!12.05!IRF8;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.96!ZBTB20;;chr16:54320646..54320672,-!p2@IRX3!1.11!18.07!IRX3;;chr8:23540441..23540466,-!p1@NKX3-1!1.10!23.23!NKX3-1;;chr13:37494365..37494381,-!p1@SMAD9!1.10!20.22!SMAD9;;chr13:37446840..37446847,-!p15@SMAD9!1.09!11.19!SMAD9;;chr3:114819073..114819100,-!p10@ZBTB20!1.09!11.19!ZBTB20;;chr18:45663490..45663528,-!p2@ZBTB7C!1.07!10.76!ZBTB7C;;chr14:38064429..38064486,-!p1@FOXA1!1.07!10.76!FOXA1;;chr2:66662249..66662267,+!p2@MEIS1!1.06!40.44!MEIS1;;chr18:52989081..52989117,-!p7@TCF4!1.06!16.35!TCF4;;chr3:126076264..126076305,-!p2@KLF15!1.06!14.63!KLF15;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.48!GATA3;;chr9:14314566..14314618,-!p1@NFIB!1.04!120.03!NFIB;;chr16:54320101..54320125,-!p4@IRX3!1.04!14.20!IRX3;;chrX:107018969..107019024,-!p6@TSC22D3!1.04!13.77!TSC22D3;;chr1:217251561..217251581,-!p8@ESRRG!1.04!9.90!ESRRG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.48!IRX3;;chr11:34535276..34535287,-!p3@ELF5!1.02!9.47!ELF5;;chr12:52450779..52450791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107;;chr14:75988771..75988826,+!p1@BATF!0.38!2.15!BATF;;chr11:47279248..47279264,+!p3@NR1H3!0.38!1.72!NR1H3;;chr7:44143738..44143760,+!p4@AEBP1!0.38!1.72!AEBP1;;chr2:231191875..231191918,+!p1@SP140L!0.37!20.22!SP140L;;chr6:41514078..41514158,+!p1@FOXP4!0.37!18.50!FOXP4;;chr2:10183651..10183713,+!p1@KLF11!0.37!15.06!KLF11;;chr17:36861393..36861439,+!p2@MLLT6!0.37!12.05!MLLT6;;chr13:45151434..45151507,-!p3@TSC22D1!0.37!11.19!TSC22D1;;chr1:249153268..249153298,-!p1@ZNF692!0.37!10.76!ZNF692;;chr7:101459230..101459243,+!p2@CUX1!0.37!9.90!CUX1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.37!5.59!ZBTB7A;;chr17:36861675..36861697,+!p3@MLLT6!0.37!4.30!MLLT6;;chr15:41913412..41913456,+!p3@MGA!0.37!3.87!MGA;;chr10:44144264..44144286,-!p2@ZNF32!0.37!3.87!ZNF32;;chr3:23986748..23986761,+!p3@NR1D2!0.37!3.87!NR1D2;;chr5:139487608..139487663,+!p3@PURA!0.37!3.87!PURA;;chr6:56954830..56954845,+!p3@ZNF451!0.37!3.87!ZNF451;;chr8:60031619..60031676,-!p1@TOX!0.37!3.87!TOX;;chr11:7041554..7041602,-!p1@ZNF214!0.37!3.44!ZNF214;;chr19:21324863..21324874,+!p2@ZNF431!0.37!3.01!ZNF431;;chr1:8483723..8483752,-!p12@RERE!0.37!2.58!RERE;;chr2:176033054..176033065,-!p4@ATF2!0.37!1.72!ATF2;;chr13:45010939..45011033,-!p1@TSC22D1!0.36!135.95!TSC22D1;;chr12:54020107..54020196,-!p1@ATF7!0.36!19.36!ATF7;;chr4:140098339..140098392,-!p1@ELF2!0.36!16.78!ELF2;;chr12:80084333..80084380,-!p4@PAWR!0.36!9.47!PAWR;;chr19:38270215..38270251,-!p1@ZNF573!0.36!7.74!ZNF573;;chr9:20622444..20622468,-!p2@MLLT3!0.36!6.02!MLLT3;;chr9:73029219..73029289,-!p2@KLF9!0.36!5.59!KLF9;;chr19:3359257..3359362,+!p3@NFIC!0.36!5.59!NFIC;;chr8:106330656..106330684,+!p1@ZFPM2!0.36!4.73!ZFPM2;;chr10:38146994..38147039,-!p2@ZNF248!0.36!4.30!ZNF248;;chr18:32957260..32957309,-!p1@ZNF396!0.36!3.87!ZNF396;;chr15:42749722..42749739,-!p2@ZFP106!0.36!3.01!ZFP106;;chr5:178368186..178368238,+!p1@ZNF454!0.36!3.01!ZNF454;;chr9:2015275..2015287,+!p8@SMARCA2!0.36!2.58!SMARCA2;;chr17:41622834..41622883,-!p6@ETV4!0.36!1.72!ETV4;;chr14:99738059..99738086,-!p2@BCL11B!0.36!1.29!BCL11B;;chr15:57511589..57511608,+!p4@TCF12!0.36!1.29!TCF12;;chr16:31141363..31141372,+!p4@KAT8!0.36!1.29!KAT8;;chr16:3185079..3185081,+!p7@ZNF213!0.36!1.29!ZNF213;;chr16:49698178..49698209,-!p1@ZNF423!0.36!1.29!ZNF423;;chr16:52580953..52580992,-!p2@TOX3!0.36!1.29!TOX3;;chr16:54320280..54320291,-!p9@IRX3!0.36!1.29!IRX3;;chr16:54964690..54964703,+!p4@IRX5!0.36!1.29!IRX5;;chr16:79634581..79634592,-!p4@MAF!0.36!1.29!MAF;;chr17:37934204..37934241,-!p3@IKZF3!0.36!1.29!IKZF3;;chr17:37934365..37934387,-!p2@IKZF3!0.36!1.29!IKZF3;;chr17:38020557..38020572,-!p4@IKZF3!0.36!1.29!IKZF3;;chr17:38252990..38252995,-!p12@NR1D1!0.36!1.29!NR1D1;;chr17:41738684..41738704,-!p2@MEOX1!0.36!1.29!MEOX1;;chr18:42260840..42260860,+!p2@SETBP1!0.36!1.29!SETBP1;;chr18:42260861..42260882,+!p5@SETBP1!0.36!1.29!SETBP1;;chr19:22193731..22193751,-!p1@ZNF208!0.36!1.29!ZNF208;;chr10:102890767..102890780,+!p4@TLX1!0.36!1.29!TLX1;;chr10:135122868..135122893,+!p3@ZNF511!0.36!1.29!ZNF511;;chr10:135122906..135122921,+!p4@ZNF511!0.36!1.29!ZNF511;;chr11:125034605..125034636,+!p2@PKNOX2!0.36!1.29!PKNOX2;;chr11:128457492..128457506,-!p6@ETS1!0.36!1.29!ETS1;;chr11:129245763..129245768,+!p4@BARX2!0.36!1.29!BARX2;;chr11:34533257..34533273,-!p4@ELF5!0.36!1.29!ELF5;;chr11:47399996..47400014,-!p4@SPI1!0.36!1.29!SPI1;;chr12:11905383..11905407,+!p11@ETV6!0.36!1.29!ETV6;;chr12:52448151..52448200,+!p8@NR4A1!0.36!1.29!NR4A1;;chr12:52448420..52448460,+!p5@NR4A1!0.36!1.29!NR4A1;;chr12:54778471..54778528,-!p1@ZNF385A!0.36!1.29!ZNF385A;;chr13:37494275..37494304,-!p2@SMAD9!0.36!1.29!SMAD9;;chr14:37051798..37051831,-!p1@NKX2-8!0.36!1.29!NKX2-8;;chr14:38064307..38064323,-!p3@FOXA1!0.36!1.29!FOXA1;;chr2:114036488..114036504,-!p1@PAX8!0.36!1.29!PAX8;;chr2:157189317..157189325,-!p8@NR4A2!0.36!1.29!NR4A2;;chr2:16080659..16080685,+!p1@MYCN!0.36!1.29!MYCN;;chr2:60780730..60780742,-!p5@BCL11A!0.36!1.29!BCL11A;;chr2:68592394..68592405,+!p2@PLEK!0.36!1.29!PLEK;;chr3:189507460..189507471,+!p3@TP63!0.36!1.29!TP63;;chr3:24536332..24536358,-!p2@THRB!0.36!1.29!THRB;;chr3:25470062..25470084,+!p4@RARB!0.36!1.29!RARB;;chr3:69915385..69915438,+!p3@MITF!0.36!1.29!MITF;;chr4:103423079..103423112,+!p4@NFKB1!0.36!1.29!NFKB1;;chr4:47916225..47916234,-!p5@NFXL1!0.36!1.29!NFXL1;;chr19:50922187..50922204,+!p1@SPIB!0.36!1.29!SPIB;;chr1:10754428..10754434,-!p6@CASZ1!0.36!1.29!CASZ1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.36!1.29!ZBTB7B;;chr1:164528975..164528998,+!p13@PBX1!0.36!1.29!PBX1;;chr1:170632310..170632321,+!p15@PRRX1!0.36!1.29!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.36!1.29!PRRX1;;chr1:211433429..211433441,+!p14@RCOR3!0.36!1.29!RCOR3;;chr1:226411644..226411666,+!p3@MIXL1!0.36!1.29!MIXL1;;chr1:42801540..42801562,-!p4@FOXJ3!0.36!1.29!FOXJ3;;chr1:61542891..61542920,+!p12@NFIA!0.36!1.29!NFIA;;chr1:61547405..61547434,+!p11@NFIA!0.36!1.29!NFIA;;chr20:30433396..30433414,-!p1@FOXS1!0.36!1.29!FOXS1;;chr20:56195474..56195506,-!p1@ZBP1!0.36!1.29!ZBP1;;chr21:30672433..30672464,+!p6@BACH1!0.36!1.29!BACH1;;chr9:215765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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001829;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg38.nobarcode.ctss.bed.gz
|id=FF:10093-102C3
|is_a=EFO:0002091;;FF:0010093
|is_obsolete=
|library_id=CNhs11677
|library_id_phase_based=2:CNhs11677
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10093
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10093
|name=salivary gland, adult, pool1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11677,LSID808,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=102
|rna_catalog_number=Cat: 636643 Lot: 8101369A-13
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=8101369A-13
|rna_od260/230=
|rna_od260/280=
|rna_position=C3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=102C3
|rna_weight_ug=10
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=16-60 years old adult
|sample_disease=normal
|sample_donor(cell lot)=24 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.17093605735667e-230!GO:0005737;cytoplasm;9.78961110036425e-197!GO:0044444;cytoplasmic part;2.38329194295116e-149!GO:0043226;organelle;9.75659279850877e-136!GO:0043229;intracellular organelle;2.24843074634778e-135!GO:0043231;intracellular membrane-bound organelle;7.82493692688081e-127!GO:0043227;membrane-bound organelle;7.82493692688081e-127!GO:0044422;organelle part;9.50051827969847e-99!GO:0044446;intracellular organelle part;5.47433781944412e-97!GO:0005515;protein binding;8.51016714160616e-70!GO:0005739;mitochondrion;9.73354480748265e-65!GO:0032991;macromolecular complex;1.24717781583954e-61!GO:0031090;organelle membrane;8.64080286418652e-60!GO:0030529;ribonucleoprotein complex;3.44171514291445e-55!GO:0044237;cellular metabolic process;9.71180835051997e-48!GO:0003723;RNA binding;2.87710118334969e-47!GO:0044429;mitochondrial part;6.38592968190962e-46!GO:0043233;organelle lumen;2.69884182252801e-45!GO:0031974;membrane-enclosed lumen;2.69884182252801e-45!GO:0044238;primary metabolic process;3.33451624066363e-45!GO:0033036;macromolecule localization;3.48545801306194e-42!GO:0015031;protein transport;6.92262849923951e-42!GO:0045184;establishment of protein localization;1.99488528326341e-40!GO:0008104;protein localization;3.09319948105639e-40!GO:0043170;macromolecule metabolic process;1.58326450002546e-38!GO:0031967;organelle envelope;2.55267899232843e-38!GO:0031975;envelope;5.69604374187085e-38!GO:0009058;biosynthetic process;2.96823622637982e-37!GO:0044428;nuclear part;2.22384313517917e-36!GO:0006412;translation;2.42123810152166e-36!GO:0005840;ribosome;2.60668545248454e-36!GO:0019538;protein metabolic process;2.46616706301676e-35!GO:0009059;macromolecule biosynthetic process;5.46655306758959e-35!GO:0005829;cytosol;4.74204274241673e-32!GO:0044260;cellular macromolecule metabolic process;9.18565841230447e-32!GO:0003735;structural constituent of ribosome;9.79236453862163e-32!GO:0044249;cellular biosynthetic process;4.25784128901319e-31!GO:0005740;mitochondrial envelope;8.89367112217168e-31!GO:0043234;protein complex;9.0565976423041e-31!GO:0044267;cellular protein metabolic process;2.32225396153938e-30!GO:0031966;mitochondrial membrane;1.15734617392846e-29!GO:0005743;mitochondrial inner membrane;1.81972162619311e-29!GO:0019866;organelle inner membrane;1.94086964849078e-29!GO:0016043;cellular component organization and biogenesis;3.53940913653156e-29!GO:0033279;ribosomal subunit;1.93774087570711e-28!GO:0006396;RNA processing;4.26634534994013e-27!GO:0046907;intracellular transport;1.03146745081537e-26!GO:0006886;intracellular protein transport;3.76766585422794e-26!GO:0016071;mRNA metabolic process;6.44190450043042e-26!GO:0012505;endomembrane system;1.54303527081388e-25!GO:0005634;nucleus;2.93606507819453e-25!GO:0006119;oxidative phosphorylation;6.28789209507115e-25!GO:0008380;RNA splicing;4.91674479278777e-24!GO:0005783;endoplasmic reticulum;1.01736782342416e-23!GO:0031981;nuclear lumen;1.79355840715699e-22!GO:0006397;mRNA processing;2.42299144840506e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.65460813812721e-21!GO:0005794;Golgi apparatus;7.31602641538254e-21!GO:0065003;macromolecular complex assembly;2.04859766214754e-20!GO:0031980;mitochondrial lumen;3.70916529467454e-19!GO:0005759;mitochondrial matrix;3.70916529467454e-19!GO:0022607;cellular component assembly;2.21645635178707e-18!GO:0044445;cytosolic part;2.43223504120001e-18!GO:0044455;mitochondrial membrane part;4.19675186638953e-18!GO:0044432;endoplasmic reticulum part;4.82711473680605e-18!GO:0016192;vesicle-mediated transport;7.92748228055704e-18!GO:0051649;establishment of cellular localization;8.23061547189156e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.51152475978428e-17!GO:0051641;cellular localization;2.00245749309628e-17!GO:0010467;gene expression;2.33665386205425e-17!GO:0005746;mitochondrial respiratory chain;8.95329702517062e-17!GO:0048770;pigment granule;1.62190478651094e-16!GO:0042470;melanosome;1.62190478651094e-16!GO:0005681;spliceosome;2.65297990930966e-16!GO:0048193;Golgi vesicle transport;4.76217768905582e-16!GO:0043283;biopolymer metabolic process;5.05507174032832e-16!GO:0008134;transcription factor binding;1.18241022959866e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.66874121214204e-15!GO:0044248;cellular catabolic process;2.16572161176811e-15!GO:0005654;nucleoplasm;2.20962949560174e-15!GO:0051186;cofactor metabolic process;2.33439857790218e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.77981356972593e-15!GO:0003954;NADH dehydrogenase activity;3.77981356972593e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.77981356972593e-15!GO:0044265;cellular macromolecule catabolic process;7.4530271161074e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.75842481344011e-15!GO:0015935;small ribosomal subunit;9.56785744257372e-15!GO:0005789;endoplasmic reticulum membrane;1.15097491305021e-14!GO:0015934;large ribosomal subunit;1.2820689532827e-14!GO:0022618;protein-RNA complex assembly;2.3209420371377e-14!GO:0006457;protein folding;4.78217792997305e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.35582159140774e-14!GO:0044451;nucleoplasm part;1.21107745260016e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.51451570684599e-13!GO:0045271;respiratory chain complex I;2.51451570684599e-13!GO:0005747;mitochondrial respiratory chain complex I;2.51451570684599e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.8186520841444e-13!GO:0042773;ATP synthesis coupled electron transport;2.8186520841444e-13!GO:0043228;non-membrane-bound organelle;5.41808505897955e-13!GO:0043232;intracellular non-membrane-bound organelle;5.41808505897955e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.81916552386643e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.1810124434928e-13!GO:0019941;modification-dependent protein catabolic process;1.62078813793344e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.62078813793344e-12!GO:0044257;cellular protein catabolic process;1.80992640971944e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.83287201023509e-12!GO:0006605;protein targeting;1.91105862960304e-12!GO:0006732;coenzyme metabolic process;2.24409298432848e-12!GO:0019829;cation-transporting ATPase activity;2.59133628188606e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.59133628188606e-12!GO:0043285;biopolymer catabolic process;2.75190897547729e-12!GO:0009057;macromolecule catabolic process;3.81736028031206e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.95960350844826e-12!GO:0016462;pyrophosphatase activity;4.19465867138542e-12!GO:0008135;translation factor activity, nucleic acid binding;4.7516195063085e-12!GO:0016874;ligase activity;5.70347990291079e-12!GO:0005773;vacuole;6.85074467753288e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.75877125262282e-12!GO:0008092;cytoskeletal protein binding;1.22866079997944e-11!GO:0000166;nucleotide binding;1.47536879493643e-11!GO:0006512;ubiquitin cycle;1.6704037460805e-11!GO:0006996;organelle organization and biogenesis;2.85961625519233e-11!GO:0005793;ER-Golgi intermediate compartment;3.17780557710318e-11!GO:0000502;proteasome complex (sensu Eukaryota);3.4736297278315e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.61613164662029e-11!GO:0017111;nucleoside-triphosphatase activity;4.02440282560751e-11!GO:0009055;electron carrier activity;5.67619545558834e-11!GO:0016469;proton-transporting two-sector ATPase complex;6.53991465309228e-11!GO:0015986;ATP synthesis coupled proton transport;1.07169056195911e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.07169056195911e-10!GO:0015078;hydrogen ion transmembrane transporter activity;1.19371659810323e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.28880954603114e-10!GO:0006446;regulation of translational initiation;1.3669261271056e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.61061304930027e-10!GO:0009141;nucleoside triphosphate metabolic process;1.65531012853367e-10!GO:0044431;Golgi apparatus part;1.69234475662593e-10!GO:0005761;mitochondrial ribosome;1.7874341061261e-10!GO:0000313;organellar ribosome;1.7874341061261e-10!GO:0030163;protein catabolic process;1.95646398448233e-10!GO:0003712;transcription cofactor activity;3.0654911630616e-10!GO:0051082;unfolded protein binding;3.39305689380177e-10!GO:0031982;vesicle;3.6308598929232e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.68164467057852e-10!GO:0006915;apoptosis;4.09962820614139e-10!GO:0012501;programmed cell death;4.69225467039034e-10!GO:0006413;translational initiation;5.07168718863411e-10!GO:0043412;biopolymer modification;8.43711721872147e-10!GO:0031988;membrane-bound vesicle;9.60139307466188e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.60139307466188e-10!GO:0000323;lytic vacuole;1.0215061504257e-09!GO:0005764;lysosome;1.0215061504257e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.0215061504257e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.0215061504257e-09!GO:0031410;cytoplasmic vesicle;1.05191793610566e-09!GO:0009056;catabolic process;1.15304479240746e-09!GO:0045333;cellular respiration;1.20036420359683e-09!GO:0046034;ATP metabolic process;1.50924808831273e-09!GO:0009259;ribonucleotide metabolic process;1.75063516349954e-09!GO:0009060;aerobic respiration;2.08903909052438e-09!GO:0016023;cytoplasmic membrane-bound vesicle;2.26818852609045e-09!GO:0005768;endosome;2.33208439396759e-09!GO:0009150;purine ribonucleotide metabolic process;2.91552514402069e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.98103027073723e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.98103027073723e-09!GO:0008565;protein transporter activity;3.17934411588724e-09!GO:0006464;protein modification process;3.5796054270665e-09!GO:0016604;nuclear body;3.87249795868361e-09!GO:0008219;cell death;4.95681879605022e-09!GO:0016265;death;4.95681879605022e-09!GO:0006163;purine nucleotide metabolic process;6.38423779110127e-09!GO:0006461;protein complex assembly;6.65499135744862e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.66304670041276e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.66304670041276e-09!GO:0006754;ATP biosynthetic process;9.88292295594851e-09!GO:0006753;nucleoside phosphate metabolic process;9.88292295594851e-09!GO:0005635;nuclear envelope;1.04683374144184e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15759260144116e-08!GO:0000375;RNA splicing, via transesterification reactions;1.15759260144116e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15759260144116e-08!GO:0009109;coenzyme catabolic process;1.25341536135134e-08!GO:0003743;translation initiation factor activity;1.97146109017806e-08!GO:0006091;generation of precursor metabolites and energy;2.00313325172665e-08!GO:0016607;nuclear speck;2.0921720512255e-08!GO:0022890;inorganic cation transmembrane transporter activity;3.58221119408897e-08!GO:0000139;Golgi membrane;5.9495050838291e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.70053466809904e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.70053466809904e-08!GO:0006099;tricarboxylic acid cycle;6.70053466809904e-08!GO:0046356;acetyl-CoA catabolic process;6.70053466809904e-08!GO:0009260;ribonucleotide biosynthetic process;6.70053466809904e-08!GO:0005770;late endosome;7.62668371112147e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.48630207724073e-08!GO:0017076;purine nucleotide binding;8.48630207724073e-08!GO:0051187;cofactor catabolic process;9.16046260821614e-08!GO:0005730;nucleolus;1.17967365984019e-07!GO:0008639;small protein conjugating enzyme activity;1.19725050782223e-07!GO:0006366;transcription from RNA polymerase II promoter;1.26721560125922e-07!GO:0006164;purine nucleotide biosynthetic process;1.38725625800206e-07!GO:0006913;nucleocytoplasmic transport;1.41197724764901e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.59608466013072e-07!GO:0006084;acetyl-CoA metabolic process;1.70587617891143e-07!GO:0051188;cofactor biosynthetic process;2.07885509910102e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.07885509910102e-07!GO:0004842;ubiquitin-protein ligase activity;2.10618029375526e-07!GO:0030120;vesicle coat;3.04177238994914e-07!GO:0030662;coated vesicle membrane;3.04177238994914e-07!GO:0051169;nuclear transport;3.10947265530889e-07!GO:0048475;coated membrane;3.59775151532445e-07!GO:0030117;membrane coat;3.59775151532445e-07!GO:0019787;small conjugating protein ligase activity;4.43729265522656e-07!GO:0006752;group transfer coenzyme metabolic process;5.67307497013311e-07!GO:0032553;ribonucleotide binding;5.75370302209454e-07!GO:0032555;purine ribonucleotide binding;5.75370302209454e-07!GO:0015992;proton transport;6.79768918003461e-07!GO:0006818;hydrogen transport;9.26456885122615e-07!GO:0016887;ATPase activity;1.21446892966014e-06!GO:0043687;post-translational protein modification;1.5977716574362e-06!GO:0031965;nuclear membrane;1.63935252123556e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.77466617961739e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.92026036508405e-06!GO:0042623;ATPase activity, coupled;2.23689661489569e-06!GO:0007264;small GTPase mediated signal transduction;2.254994792419e-06!GO:0045259;proton-transporting ATP synthase complex;2.37613362148521e-06!GO:0017038;protein import;2.39496154285755e-06!GO:0016491;oxidoreductase activity;2.58883264831147e-06!GO:0005798;Golgi-associated vesicle;2.66683824926215e-06!GO:0030029;actin filament-based process;2.72810074234513e-06!GO:0009108;coenzyme biosynthetic process;2.84832594962279e-06!GO:0031252;leading edge;3.4549316744525e-06!GO:0044262;cellular carbohydrate metabolic process;3.93224896930831e-06!GO:0042981;regulation of apoptosis;4.11991297650887e-06!GO:0051246;regulation of protein metabolic process;4.280512002595e-06!GO:0051789;response to protein stimulus;4.60686041007311e-06!GO:0006986;response to unfolded protein;4.60686041007311e-06!GO:0003779;actin binding;4.88449878938575e-06!GO:0003713;transcription coactivator activity;5.15644769596727e-06!GO:0044440;endosomal part;6.7273008887894e-06!GO:0010008;endosome membrane;6.7273008887894e-06!GO:0006613;cotranslational protein targeting to membrane;7.13842944559324e-06!GO:0043067;regulation of programmed cell death;7.20150440726111e-06!GO:0048523;negative regulation of cellular process;8.33154265297894e-06!GO:0030554;adenyl nucleotide binding;9.36925873511285e-06!GO:0050662;coenzyme binding;1.10850202049039e-05!GO:0016881;acid-amino acid ligase activity;1.23281200724496e-05!GO:0005774;vacuolar membrane;1.41619105134825e-05!GO:0030133;transport vesicle;1.4900980178631e-05!GO:0006916;anti-apoptosis;1.71504755927017e-05!GO:0019899;enzyme binding;1.77674030810926e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.52605892677236e-05!GO:0008654;phospholipid biosynthetic process;2.6378690309451e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.02271229466265e-05!GO:0015399;primary active transmembrane transporter activity;3.02271229466265e-05!GO:0006793;phosphorus metabolic process;3.10910874227111e-05!GO:0006796;phosphate metabolic process;3.10910874227111e-05!GO:0016070;RNA metabolic process;3.26900128136468e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.38966412270183e-05!GO:0005524;ATP binding;3.62373832125831e-05!GO:0016044;membrane organization and biogenesis;3.77158516308643e-05!GO:0006612;protein targeting to membrane;3.89325006074386e-05!GO:0032559;adenyl ribonucleotide binding;4.6534693373451e-05!GO:0043069;negative regulation of programmed cell death;4.72765269841124e-05!GO:0016740;transferase activity;5.10728222324706e-05!GO:0016564;transcription repressor activity;5.17407970832906e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.89244160353547e-05!GO:0004812;aminoacyl-tRNA ligase activity;5.89244160353547e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.89244160353547e-05!GO:0043066;negative regulation of apoptosis;5.91813397924052e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.5666549158652e-05!GO:0048519;negative regulation of biological process;7.3235060157224e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.3235060157224e-05!GO:0019843;rRNA binding;8.2502319752939e-05!GO:0003714;transcription corepressor activity;8.2502319752939e-05!GO:0044437;vacuolar part;8.9796799652228e-05!GO:0006259;DNA metabolic process;0.000102869198515347!GO:0016563;transcription activator activity;0.000108207570050244!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000108499326649688!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000114163035747882!GO:0043038;amino acid activation;0.00011450270512441!GO:0006418;tRNA aminoacylation for protein translation;0.00011450270512441!GO:0043039;tRNA aminoacylation;0.00011450270512441!GO:0003676;nucleic acid binding;0.000119909315974749!GO:0044453;nuclear membrane part;0.000137621959961668!GO:0000245;spliceosome assembly;0.000137863553825052!GO:0042254;ribosome biogenesis and assembly;0.000152095451296475!GO:0065002;intracellular protein transport across a membrane;0.000157466760699885!GO:0007005;mitochondrion organization and biogenesis;0.000167352112941142!GO:0004298;threonine endopeptidase activity;0.000171270119715621!GO:0005762;mitochondrial large ribosomal subunit;0.000180212350440373!GO:0000315;organellar large ribosomal subunit;0.000180212350440373!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000186389668227828!GO:0043492;ATPase activity, coupled to movement of substances;0.000192279650790343!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000204971716244545!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000204971716244545!GO:0051427;hormone receptor binding;0.000204971716244545!GO:0048037;cofactor binding;0.000207692582548363!GO:0000151;ubiquitin ligase complex;0.000224299675678762!GO:0006606;protein import into nucleus;0.000229244180901508!GO:0051170;nuclear import;0.00024780424978522!GO:0016310;phosphorylation;0.000252962738049132!GO:0032446;protein modification by small protein conjugation;0.00031357317988049!GO:0003924;GTPase activity;0.000314059080504323!GO:0009117;nucleotide metabolic process;0.000314845395866678!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000314845395866678!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000339460942213547!GO:0048471;perinuclear region of cytoplasm;0.000377163308982321!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000379374270079411!GO:0046474;glycerophospholipid biosynthetic process;0.000394034940374073!GO:0035257;nuclear hormone receptor binding;0.000401156958045884!GO:0006891;intra-Golgi vesicle-mediated transport;0.00040616027668055!GO:0005643;nuclear pore;0.000411592124281514!GO:0008026;ATP-dependent helicase activity;0.000411693068353391!GO:0016567;protein ubiquitination;0.000422526018140247!GO:0043021;ribonucleoprotein binding;0.000436813155282575!GO:0006399;tRNA metabolic process;0.000474530611906782!GO:0042802;identical protein binding;0.000492159338255746!GO:0005975;carbohydrate metabolic process;0.000515702883332134!GO:0005791;rough endoplasmic reticulum;0.000515702883332134!GO:0043623;cellular protein complex assembly;0.000515702883332134!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000517764640362431!GO:0045045;secretory pathway;0.000537253015854033!GO:0031324;negative regulation of cellular metabolic process;0.000537253015854033!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.000542928174420369!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000566228170952912!GO:0016787;hydrolase activity;0.000602668318610358!GO:0006650;glycerophospholipid metabolic process;0.000602668318610358!GO:0043566;structure-specific DNA binding;0.000604904239214681!GO:0005788;endoplasmic reticulum lumen;0.000616620622339844!GO:0006979;response to oxidative stress;0.000616620622339844!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00074140749571474!GO:0007265;Ras protein signal transduction;0.000843800614921731!GO:0005769;early endosome;0.0008469273540897!GO:0019318;hexose metabolic process;0.000879398086557769!GO:0030176;integral to endoplasmic reticulum membrane;0.000956382121166948!GO:0004386;helicase activity;0.000966952544477951!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000975231933959934!GO:0045947;negative regulation of translational initiation;0.00102716692777371!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00103557256178619!GO:0050657;nucleic acid transport;0.00103557256178619!GO:0051236;establishment of RNA localization;0.00103557256178619!GO:0050658;RNA transport;0.00103557256178619!GO:0032940;secretion by cell;0.00106427411636291!GO:0051920;peroxiredoxin activity;0.00107779801566331!GO:0001666;response to hypoxia;0.00110665546897387!GO:0004576;oligosaccharyl transferase activity;0.00110896489678611!GO:0030118;clathrin coat;0.00115417779023777!GO:0016568;chromatin modification;0.00116496227201299!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116720628830445!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116720628830445!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116720628830445!GO:0003724;RNA helicase activity;0.00119434829615927!GO:0051287;NAD binding;0.00120205512871093!GO:0005996;monosaccharide metabolic process;0.00120259683517134!GO:0005525;GTP binding;0.00122040402744915!GO:0016853;isomerase activity;0.00127448711635935!GO:0006414;translational elongation;0.00129648658626297!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00140674460618013!GO:0030384;phosphoinositide metabolic process;0.00144872249678818!GO:0005765;lysosomal membrane;0.00147147853184361!GO:0015629;actin cytoskeleton;0.0015085020100921!GO:0046489;phosphoinositide biosynthetic process;0.0015085020100921!GO:0009892;negative regulation of metabolic process;0.00154131942062289!GO:0031902;late endosome membrane;0.00154131942062289!GO:0008250;oligosaccharyl transferase complex;0.00154490740629648!GO:0016197;endosome transport;0.00160186887727311!GO:0006403;RNA localization;0.0016546030083992!GO:0019867;outer membrane;0.0016546030083992!GO:0030867;rough endoplasmic reticulum membrane;0.00170885675586723!GO:0048500;signal recognition particle;0.00170885675586723!GO:0019752;carboxylic acid metabolic process;0.00170885675586723!GO:0006082;organic acid metabolic process;0.00185025200443781!GO:0031968;organelle outer membrane;0.00187076136232372!GO:0006066;alcohol metabolic process;0.00192413775611388!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00192467371721874!GO:0008610;lipid biosynthetic process;0.00207880729130873!GO:0046848;hydroxyapatite binding;0.00210829894087813!GO:0045454;cell redox homeostasis;0.00213404945427478!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00223246993836276!GO:0005741;mitochondrial outer membrane;0.00225257068684995!GO:0030658;transport vesicle membrane;0.00231223626377131!GO:0016481;negative regulation of transcription;0.00233270966481223!GO:0005048;signal sequence binding;0.00237188530728591!GO:0045786;negative regulation of progression through cell cycle;0.00243911175544915!GO:0005667;transcription factor complex;0.00249629513784967!GO:0003697;single-stranded DNA binding;0.00252642516896063!GO:0050794;regulation of cellular process;0.00253910838455983!GO:0005083;small GTPase regulator activity;0.00294705626691119!GO:0046467;membrane lipid biosynthetic process;0.00295215550574697!GO:0006897;endocytosis;0.00303863963405666!GO:0010324;membrane invagination;0.00303863963405666!GO:0003746;translation elongation factor activity;0.00307881897170441!GO:0030134;ER to Golgi transport vesicle;0.00316324403542444!GO:0000314;organellar small ribosomal subunit;0.0031769408675592!GO:0005763;mitochondrial small ribosomal subunit;0.0031769408675592!GO:0005905;coated pit;0.00317740812785187!GO:0001726;ruffle;0.00325365526490856!GO:0016072;rRNA metabolic process;0.00330573997278523!GO:0051128;regulation of cellular component organization and biogenesis;0.00344974015644657!GO:0050789;regulation of biological process;0.00349373085871398!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00371785661002595!GO:0030127;COPII vesicle coat;0.00428936635086363!GO:0012507;ER to Golgi transport vesicle membrane;0.00428936635086363!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0043654386925081!GO:0016859;cis-trans isomerase activity;0.0044194954029675!GO:0006635;fatty acid beta-oxidation;0.00446895858651149!GO:0046930;pore complex;0.00446895858651149!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00451039491549514!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00451039491549514!GO:0016779;nucleotidyltransferase activity;0.00453763057333644!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00453763057333644!GO:0045047;protein targeting to ER;0.00453763057333644!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00453763057333644!GO:0031072;heat shock protein binding;0.00477629278170859!GO:0006364;rRNA processing;0.00517305521128503!GO:0009081;branched chain family amino acid metabolic process;0.00529227434079668!GO:0030659;cytoplasmic vesicle membrane;0.00529384230273905!GO:0035258;steroid hormone receptor binding;0.00551259319725355!GO:0045893;positive regulation of transcription, DNA-dependent;0.00570861881217124!GO:0007243;protein kinase cascade;0.00593162649397481!GO:0006118;electron transport;0.00593162649397481!GO:0030663;COPI coated vesicle membrane;0.00593162649397481!GO:0030126;COPI vesicle coat;0.00593162649397481!GO:0012506;vesicle membrane;0.00603680957376418!GO:0032561;guanyl ribonucleotide binding;0.00612248450393796!GO:0019001;guanyl nucleotide binding;0.00612248450393796!GO:0051087;chaperone binding;0.00619086693279767!GO:0006518;peptide metabolic process;0.00623100178019517!GO:0030660;Golgi-associated vesicle membrane;0.00628537055494271!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00631379553335088!GO:0051028;mRNA transport;0.00637587345519358!GO:0030027;lamellipodium;0.00646558779073097!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.00646558779073097!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00679932465428126!GO:0046983;protein dimerization activity;0.00692373944662006!GO:0006984;ER-nuclear signaling pathway;0.00695843319798862!GO:0030137;COPI-coated vesicle;0.00717610336977613!GO:0006323;DNA packaging;0.00731533553639433!GO:0009083;branched chain family amino acid catabolic process;0.00766929582970207!GO:0003729;mRNA binding;0.00791499973251659!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00848307494597552!GO:0008186;RNA-dependent ATPase activity;0.00854560480302191!GO:0008312;7S RNA binding;0.00873562087322253!GO:0051168;nuclear export;0.00882429198859723!GO:0048522;positive regulation of cellular process;0.00912470306065635!GO:0030968;unfolded protein response;0.0091441677672738!GO:0018196;peptidyl-asparagine modification;0.00918062854351728!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00918062854351728!GO:0008361;regulation of cell size;0.00929198867832967!GO:0009100;glycoprotein metabolic process;0.00936181801447994!GO:0016049;cell growth;0.00936809960618471!GO:0006643;membrane lipid metabolic process;0.00943918592917776!GO:0045941;positive regulation of transcription;0.00951165843940906!GO:0051726;regulation of cell cycle;0.0105458906724789!GO:0043681;protein import into mitochondrion;0.0105591094092339!GO:0006506;GPI anchor biosynthetic process;0.0106296618279138!GO:0006892;post-Golgi vesicle-mediated transport;0.0109414425901294!GO:0030433;ER-associated protein catabolic process;0.0110674068625998!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0110674068625998!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0111196421102424!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111843741500412!GO:0008287;protein serine/threonine phosphatase complex;0.0112341016583028!GO:0005912;adherens junction;0.0114399615862795!GO:0016126;sterol biosynthetic process;0.0115008573639045!GO:0006644;phospholipid metabolic process;0.0115076113980569!GO:0043488;regulation of mRNA stability;0.0116796364827581!GO:0043487;regulation of RNA stability;0.0116796364827581!GO:0000074;regulation of progression through cell cycle;0.0117530309185084!GO:0001558;regulation of cell growth;0.0119162360708849!GO:0005869;dynactin complex;0.0119317781935893!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0119317781935893!GO:0030140;trans-Golgi network transport vesicle;0.0120123359994786!GO:0030880;RNA polymerase complex;0.0120428165826525!GO:0051252;regulation of RNA metabolic process;0.0122787692836783!GO:0006402;mRNA catabolic process;0.012636542846555!GO:0043284;biopolymer biosynthetic process;0.012636542846555!GO:0006417;regulation of translation;0.012636542846555!GO:0044433;cytoplasmic vesicle part;0.012636542846555!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.012636542846555!GO:0015002;heme-copper terminal oxidase activity;0.012636542846555!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.012636542846555!GO:0004129;cytochrome-c oxidase activity;0.012636542846555!GO:0033176;proton-transporting V-type ATPase complex;0.0130854499640399!GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.0130854499640399!GO:0051540;metal cluster binding;0.0131385879583486!GO:0051536;iron-sulfur cluster binding;0.0131385879583486!GO:0050811;GABA receptor binding;0.0135357637095841!GO:0007040;lysosome organization and biogenesis;0.0135357637095841!GO:0005099;Ras GTPase activator activity;0.0141704390563027!GO:0031301;integral to organelle membrane;0.0148242957886876!GO:0048487;beta-tubulin binding;0.0148342124775915!GO:0019904;protein domain specific binding;0.0151929108217067!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0153540003437458!GO:0005885;Arp2/3 protein complex;0.0153540003437458!GO:0033673;negative regulation of kinase activity;0.0162867090981263!GO:0006469;negative regulation of protein kinase activity;0.0162867090981263!GO:0006354;RNA elongation;0.0163376249624024!GO:0005925;focal adhesion;0.0167061839424637!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0167944390187641!GO:0030041;actin filament polymerization;0.0168073411849137!GO:0006401;RNA catabolic process;0.0169368451242081!GO:0006505;GPI anchor metabolic process;0.0183789369948062!GO:0004300;enoyl-CoA hydratase activity;0.0184599389082872!GO:0030135;coated vesicle;0.0190192279320114!GO:0030132;clathrin coat of coated pit;0.0192596360543975!GO:0017166;vinculin binding;0.0194046052663332!GO:0016791;phosphoric monoester hydrolase activity;0.0196794193197507!GO:0031529;ruffle organization and biogenesis;0.0203535810510339!GO:0004004;ATP-dependent RNA helicase activity;0.020375033593021!GO:0009165;nucleotide biosynthetic process;0.0204127616880772!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0205668866059346!GO:0007034;vacuolar transport;0.0208082258024693!GO:0003899;DNA-directed RNA polymerase activity;0.020858560387276!GO:0004722;protein serine/threonine phosphatase activity;0.0211782230775943!GO:0005862;muscle thin filament tropomyosin;0.0215234628595147!GO:0030125;clathrin vesicle coat;0.0215631677156819!GO:0030665;clathrin coated vesicle membrane;0.0215631677156819!GO:0015631;tubulin binding;0.0215631677156819!GO:0004448;isocitrate dehydrogenase activity;0.0229576203142113!GO:0035035;histone acetyltransferase binding;0.0229950807561679!GO:0030119;AP-type membrane coat adaptor complex;0.0230684155593053!GO:0043034;costamere;0.0232733590695932!GO:0030521;androgen receptor signaling pathway;0.0237444995462627!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0242534282507962!GO:0000428;DNA-directed RNA polymerase complex;0.0242534282507962!GO:0043087;regulation of GTPase activity;0.0243626791086232!GO:0006595;polyamine metabolic process;0.0243839035448184!GO:0008154;actin polymerization and/or depolymerization;0.0244842477809263!GO:0006509;membrane protein ectodomain proteolysis;0.0247976144368428!GO:0033619;membrane protein proteolysis;0.0247976144368428!GO:0006006;glucose metabolic process;0.025996667176823!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0268899474925351!GO:0048518;positive regulation of biological process;0.0269884435172709!GO:0009225;nucleotide-sugar metabolic process;0.0270836493230243!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.027677330529699!GO:0006950;response to stress;0.0277594853992529!GO:0003690;double-stranded DNA binding;0.0280254699345373!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0281425629960793!GO:0006383;transcription from RNA polymerase III promoter;0.0281557543305789!GO:0004364;glutathione transferase activity;0.0282401789949699!GO:0031326;regulation of cellular biosynthetic process;0.0285830310790019!GO:0045892;negative regulation of transcription, DNA-dependent;0.0288891338500643!GO:0007033;vacuole organization and biogenesis;0.0294991713675833!GO:0006497;protein amino acid lipidation;0.0297670252313914!GO:0030131;clathrin adaptor complex;0.0307875378821442!GO:0019395;fatty acid oxidation;0.031129620116818!GO:0006695;cholesterol biosynthetic process;0.0317291119542933!GO:0016408;C-acyltransferase activity;0.0317966223377503!GO:0044255;cellular lipid metabolic process;0.0323607378886716!GO:0042158;lipoprotein biosynthetic process;0.0325462616208984!GO:0051348;negative regulation of transferase activity;0.0328685119513935!GO:0008286;insulin receptor signaling pathway;0.0343549115237686!GO:0006516;glycoprotein catabolic process;0.0347565252412595!GO:0040008;regulation of growth;0.03697960904018!GO:0030518;steroid hormone receptor signaling pathway;0.0373207840713183!GO:0006974;response to DNA damage stimulus;0.0373318213016979!GO:0008234;cysteine-type peptidase activity;0.0373960905995231!GO:0031032;actomyosin structure organization and biogenesis;0.0374160573627193!GO:0031628;opioid receptor binding;0.0376072447041725!GO:0031852;mu-type opioid receptor binding;0.0376072447041725!GO:0018106;peptidyl-histidine phosphorylation;0.039073664477838!GO:0030145;manganese ion binding;0.039308352049512!GO:0017022;myosin binding;0.0397075409532068!GO:0015036;disulfide oxidoreductase activity;0.0400458839661048!GO:0000059;protein import into nucleus, docking;0.0401750735126606!GO:0006904;vesicle docking during exocytosis;0.0413248818598924!GO:0032594;protein transport within lipid bilayer;0.0414349829902813!GO:0032907;transforming growth factor-beta3 production;0.0414349829902813!GO:0032596;protein transport into lipid raft;0.0414349829902813!GO:0032910;regulation of transforming growth factor-beta3 production;0.0414349829902813!GO:0032595;B cell receptor transport within lipid bilayer;0.0414349829902813!GO:0033606;chemokine receptor transport within lipid bilayer;0.0414349829902813!GO:0032600;chemokine receptor transport out of lipid raft;0.0414349829902813!GO:0032599;protein transport out of lipid raft;0.0414349829902813!GO:0032597;B cell receptor transport into lipid raft;0.0414349829902813!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0414349829902813!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0422387385873303!GO:0022406;membrane docking;0.042699529305124!GO:0048278;vesicle docking;0.042699529305124!GO:0005684;U2-dependent spliceosome;0.0427713111192165!GO:0006839;mitochondrial transport;0.0430599279150717!GO:0016836;hydro-lyase activity;0.0432513717369422!GO:0005784;translocon complex;0.0438558555641472!GO:0042581;specific granule;0.0447518360780341!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0452922042068013!GO:0046164;alcohol catabolic process;0.0463563269775921!GO:0000302;response to reactive oxygen species;0.0464001664128786!GO:0048468;cell development;0.0465432749641015!GO:0006465;signal peptide processing;0.0465675240159154!GO:0030695;GTPase regulator activity;0.047065404858917!GO:0007010;cytoskeleton organization and biogenesis;0.0471887731688938!GO:0003711;transcription elongation regulator activity;0.0477121310540668!GO:0007049;cell cycle;0.0480087617827745!GO:0045239;tricarboxylic acid cycle enzyme complex;0.0486570056144877!GO:0030911;TPR domain binding;0.0498504003372105
|sample_id=10093
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=salivary gland
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10093-102C3;search_select_hide=table117:FF:10093-102C3
}}
}}

Latest revision as of 12:21, 3 June 2020

Name:salivary gland, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11677
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesalivary gland
dev stage16-60 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-13
catalog numberCat: 636643 Lot: 8101369A-13
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005188
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11677 CAGE DRX008717 DRR009589
Accession ID Hg19

Library idBAMCTSS
CNhs11677 DRZ001014 DRZ002399
Accession ID Hg38

Library idBAMCTSS
CNhs11677 DRZ012364 DRZ013749
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
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C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11677

Jaspar motifP-value
MA0002.20.212
MA0003.10.222
MA0004.10.558
MA0006.10.194
MA0007.10.561
MA0009.10.0476
MA0014.10.688
MA0017.10.333
MA0018.20.00194
MA0019.10.775
MA0024.16.17612e-4
MA0025.10.835
MA0027.10.376
MA0028.10.0219
MA0029.10.585
MA0030.10.00156
MA0031.10.0984
MA0035.20.898
MA0038.10.734
MA0039.20.024
MA0040.10.529
MA0041.10.813
MA0042.10.288
MA0043.10.0242
MA0046.10.933
MA0047.22.0805e-4
MA0048.12.63977e-5
MA0050.10.0584
MA0051.10.347
MA0052.11.39033e-4
MA0055.10.00425
MA0057.10.444
MA0058.10.253
MA0059.10.233
MA0060.10.0319
MA0061.10.0786
MA0062.20.00925
MA0065.20.821
MA0066.10.16
MA0067.10.00833
MA0068.10.629
MA0069.10.97
MA0070.10.6
MA0071.10.53
MA0072.10.384
MA0073.10.756
MA0074.10.758
MA0076.10.0259
MA0077.10.135
MA0078.10.197
MA0079.20.116
MA0080.20.646
MA0081.10.00468
MA0083.10.633
MA0084.10.652
MA0087.10.149
MA0088.10.403
MA0090.10.61
MA0091.10.293
MA0092.10.605
MA0093.10.555
MA0099.22.83573e-14
MA0100.10.00975
MA0101.10.0182
MA0102.20.0692
MA0103.19.62442e-7
MA0104.20.0826
MA0105.10.00264
MA0106.10.768
MA0107.10.0766
MA0108.25.83093e-7
MA0111.10.576
MA0112.20.0352
MA0113.10.473
MA0114.10.923
MA0115.10.727
MA0116.10.741
MA0117.10.143
MA0119.10.304
MA0122.10.846
MA0124.10.464
MA0125.10.543
MA0131.10.0649
MA0135.10.411
MA0136.10.459
MA0137.20.406
MA0138.20.0246
MA0139.10.457
MA0140.10.321
MA0141.10.0825
MA0142.10.95
MA0143.10.209
MA0144.10.704
MA0145.10.00869
MA0146.10.345
MA0147.10.0598
MA0148.15.36577e-4
MA0149.10.683
MA0150.15.80506e-4
MA0152.10.459
MA0153.10.031
MA0154.10.455
MA0155.10.75
MA0156.10.485
MA0157.10.0608
MA0159.10.299
MA0160.10.129
MA0162.10.738
MA0163.10.00557
MA0164.10.0557
MA0258.10.159
MA0259.10.216



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11677

Novel motifP-value
10.918
100.0316
1000.759
1010.706
1020.613
1030.745
1040.349
1050.345
1060.874
1070.243
1080.684
1090.989
110.924
1100.555
1110.534
1120.313
1130.257
1140.914
1150.712
1160.811
1170.125
1180.232
1190.355
120.598
1200.124
1210.824
1220.262
1230.182
1240.984
1250.442
1260.0825
1270.559
1280.475
1290.755
130.719
1300.722
1310.664
1320.0507
1330.178
1340.00132
1350.958
1360.682
1370.649
1380.304
1390.645
140.363
1400.885
1410.912
1420.6
1430.205
1440.0649
1450.202
1460.00639
1470.874
1480.972
1490.0969
150.804
1500.667
1510.691
1520.37
1530.926
1540.972
1550.868
1560.134
1570.333
1580.774
1590.0585
160.584
1600.733
1610.958
1620.266
1630.428
1640.123
1650.673
1660.911
1670.0607
1680.202
1690.0433
170.617
180.204
190.254
20.0153
200.0526
210.32
220.522
230.368
240.79
250.953
260.875
270.297
280.651
290.649
30.659
300.00638
310.751
320.814
330.919
340.748
350.587
360.00705
370.439
380.329
390.363
40.592
400.695
410.186
420.762
430.963
440.725
450.0929
460.765
470.663
480.959
490.827
50.153
500.637
510.799
520.202
530.516
540.934
550.46
560.601
570.717
580.371
590.414
60.357
600.279
610.954
620.814
630.243
640.927
650.305
660.418
670.676
680.467
690.178
70.489
700.404
710.318
720.77
730.835
740.568
750.341
760.108
770.00196
780.354
790.113
80.911
800.195
810.334
820.6
830.623
840.56
850.213
860.87
870.887
880.88
890.294
90.698
900.845
910.876
920.192
930.885
940.116
950.0111
960.532
970.62
980.683
990.354



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11677


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010093 (human salivary gland - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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