FF:10163-103B1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005357 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10034;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008691;DRR009563;DRZ000988;DRZ002373;DRZ012338;DRZ013723 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010163 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10163-103B1 | |id=FF:10163-103B1 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010163 | ||
|is_obsolete= | |||
|library_id=CNhs12320 | |||
|library_id_phase_based=2:CNhs12320 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10163 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10163 | |||
|name=occipital cortex, adult, donor10252 | |name=occipital cortex, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10034,,, | |profile_cagescan=NCig10034,,, | ||
|profile_hcage=CNhs12320,LSID913,release011,COMPLETED | |profile_hcage=CNhs12320,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=51.58275 | |rna_weight_ug=51.58275 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.92411413448277e-269!GO:0005737;cytoplasm;5.92429048057658e-140!GO:0043226;organelle;1.8166202352968e-106!GO:0043229;intracellular organelle;4.85341385723119e-106!GO:0043227;membrane-bound organelle;1.6103722109383e-98!GO:0043231;intracellular membrane-bound organelle;2.26633907068251e-98!GO:0044444;cytoplasmic part;9.34321835917004e-81!GO:0005515;protein binding;6.6788134913219e-76!GO:0044422;organelle part;9.28009890145011e-60!GO:0044446;intracellular organelle part;6.65025078767723e-59!GO:0032991;macromolecular complex;9.52887281966073e-56!GO:0016043;cellular component organization and biogenesis;1.27296372711808e-48!GO:0003723;RNA binding;1.57036281633378e-37!GO:0033036;macromolecule localization;1.92562126381891e-35!GO:0005634;nucleus;2.21596076618874e-34!GO:0015031;protein transport;3.09375950712959e-34!GO:0044428;nuclear part;5.74135357612489e-34!GO:0030529;ribonucleoprotein complex;9.35026821377053e-34!GO:0043233;organelle lumen;3.83459934276937e-32!GO:0031974;membrane-enclosed lumen;3.83459934276937e-32!GO:0043234;protein complex;5.14670151035691e-32!GO:0008104;protein localization;6.04834899778125e-32!GO:0005739;mitochondrion;2.06104840159881e-31!GO:0043170;macromolecule metabolic process;5.04099266583087e-31!GO:0045184;establishment of protein localization;5.42241705469973e-31!GO:0044238;primary metabolic process;1.01324546300063e-30!GO:0046907;intracellular transport;3.00033232891766e-29!GO:0044237;cellular metabolic process;7.1098730513781e-29!GO:0031090;organelle membrane;8.97205609745723e-29!GO:0016071;mRNA metabolic process;1.84064309029828e-27!GO:0051649;establishment of cellular localization;3.68280455304405e-27!GO:0051641;cellular localization;1.03057566733657e-26!GO:0016192;vesicle-mediated transport;1.03750619027665e-26!GO:0019538;protein metabolic process;9.96369956420031e-25!GO:0006396;RNA processing;5.91065065959761e-24!GO:0008380;RNA splicing;1.0179160948877e-23!GO:0044429;mitochondrial part;3.21400950154111e-23!GO:0006996;organelle organization and biogenesis;4.17660234913417e-23!GO:0043283;biopolymer metabolic process;7.36398920057424e-23!GO:0031975;envelope;1.27459543890214e-22!GO:0031967;organelle envelope;1.75586866025807e-22!GO:0006397;mRNA processing;4.37050383525763e-22!GO:0044260;cellular macromolecule metabolic process;1.794114958546e-21!GO:0031981;nuclear lumen;3.28942716568489e-21!GO:0005829;cytosol;3.98286988272585e-21!GO:0044267;cellular protein metabolic process;5.37515567793136e-21!GO:0000166;nucleotide binding;1.10744101181576e-20!GO:0006886;intracellular protein transport;1.19318406623993e-20!GO:0006119;oxidative phosphorylation;2.69141094509574e-17!GO:0005740;mitochondrial envelope;5.10332445779443e-17!GO:0065003;macromolecular complex assembly;6.53033338782565e-17!GO:0005794;Golgi apparatus;9.40223321648559e-17!GO:0031966;mitochondrial membrane;9.4089539353814e-17!GO:0031982;vesicle;2.49211757153713e-16!GO:0005681;spliceosome;4.53867302298521e-16!GO:0043412;biopolymer modification;7.20888915316955e-16!GO:0043687;post-translational protein modification;1.17119826396096e-15!GO:0031410;cytoplasmic vesicle;1.25138542302017e-15!GO:0032553;ribonucleotide binding;1.30785777866834e-15!GO:0032555;purine ribonucleotide binding;1.30785777866834e-15!GO:0019866;organelle inner membrane;1.95909640515477e-15!GO:0005840;ribosome;1.95909640515477e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.66198522917499e-15!GO:0010467;gene expression;2.93442975885539e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.01579339001866e-15!GO:0016462;pyrophosphatase activity;3.12320676786347e-15!GO:0006464;protein modification process;4.34870399713159e-15!GO:0022607;cellular component assembly;5.09333679560412e-15!GO:0006512;ubiquitin cycle;7.64510233621066e-15!GO:0031988;membrane-bound vesicle;1.09167948315798e-14!GO:0005654;nucleoplasm;1.45898212730084e-14!GO:0005743;mitochondrial inner membrane;1.51031992853658e-14!GO:0017111;nucleoside-triphosphatase activity;1.61325888299476e-14!GO:0017076;purine nucleotide binding;1.94125087956228e-14!GO:0016023;cytoplasmic membrane-bound vesicle;4.49955226997003e-14!GO:0030695;GTPase regulator activity;5.59009736585812e-14!GO:0044451;nucleoplasm part;1.52895800163057e-13!GO:0006412;translation;2.09352652969232e-13!GO:0044455;mitochondrial membrane part;7.1571755488298e-13!GO:0007264;small GTPase mediated signal transduction;1.32682263826605e-12!GO:0016874;ligase activity;1.53030612012117e-12!GO:0005746;mitochondrial respiratory chain;1.93240143673561e-12!GO:0045045;secretory pathway;2.08551670546302e-12!GO:0008134;transcription factor binding;2.63873531221214e-12!GO:0005083;small GTPase regulator activity;3.34706105112369e-12!GO:0043228;non-membrane-bound organelle;3.5681321958491e-12!GO:0043232;intracellular non-membrane-bound organelle;3.5681321958491e-12!GO:0006793;phosphorus metabolic process;3.78199021776623e-12!GO:0006796;phosphate metabolic process;3.78199021776623e-12!GO:0050136;NADH dehydrogenase (quinone) activity;8.09244884633408e-12!GO:0003954;NADH dehydrogenase activity;8.09244884633408e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.09244884633408e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.97795096409466e-12!GO:0008092;cytoskeletal protein binding;1.06979069994737e-11!GO:0003735;structural constituent of ribosome;2.23314711249306e-11!GO:0048770;pigment granule;3.55846923329279e-11!GO:0042470;melanosome;3.55846923329279e-11!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.91687685337595e-11!GO:0006457;protein folding;6.98751837588352e-11!GO:0048193;Golgi vesicle transport;9.64781908633907e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.03921116412908e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.69850627267626e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.7058763916697e-10!GO:0007010;cytoskeleton organization and biogenesis;2.16818249394718e-10!GO:0012505;endomembrane system;2.20745981362187e-10!GO:0019941;modification-dependent protein catabolic process;2.48988605172762e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.48988605172762e-10!GO:0044257;cellular protein catabolic process;3.46828239980958e-10!GO:0032559;adenyl ribonucleotide binding;3.70483762391983e-10!GO:0030964;NADH dehydrogenase complex (quinone);6.00546176053279e-10!GO:0045271;respiratory chain complex I;6.00546176053279e-10!GO:0005747;mitochondrial respiratory chain complex I;6.00546176053279e-10!GO:0033279;ribosomal subunit;6.74449873554831e-10!GO:0022618;protein-RNA complex assembly;7.38176843847991e-10!GO:0042775;organelle ATP synthesis coupled electron transport;9.55268724204574e-10!GO:0042773;ATP synthesis coupled electron transport;9.55268724204574e-10!GO:0005768;endosome;1.03623506210036e-09!GO:0009058;biosynthetic process;1.08266451054991e-09!GO:0016604;nuclear body;1.37511856979261e-09!GO:0005524;ATP binding;1.58931516424286e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.72729208838638e-09!GO:0044265;cellular macromolecule catabolic process;1.87330859677355e-09!GO:0006605;protein targeting;2.6067908039859e-09!GO:0016310;phosphorylation;4.04244801808487e-09!GO:0009059;macromolecule biosynthetic process;4.48156562060023e-09!GO:0030554;adenyl nucleotide binding;4.50509410944444e-09!GO:0019899;enzyme binding;5.30799856171387e-09!GO:0016044;membrane organization and biogenesis;5.33515726321465e-09!GO:0016070;RNA metabolic process;7.42056703953703e-09!GO:0030036;actin cytoskeleton organization and biogenesis;7.9052467539837e-09!GO:0043285;biopolymer catabolic process;8.15069168615759e-09!GO:0003924;GTPase activity;8.45896878552288e-09!GO:0008135;translation factor activity, nucleic acid binding;1.02690393911951e-08!GO:0008639;small protein conjugating enzyme activity;1.07174020796947e-08!GO:0016607;nuclear speck;1.15310095081933e-08!GO:0006810;transport;1.16586989306971e-08!GO:0044445;cytosolic part;1.328487501767e-08!GO:0004842;ubiquitin-protein ligase activity;1.52507425412116e-08!GO:0031980;mitochondrial lumen;1.58354082930909e-08!GO:0005759;mitochondrial matrix;1.58354082930909e-08!GO:0030135;coated vesicle;1.73720647094654e-08!GO:0019829;cation-transporting ATPase activity;1.73720647094654e-08!GO:0008565;protein transporter activity;1.77269409039762e-08!GO:0019787;small conjugating protein ligase activity;2.16017684899385e-08!GO:0051082;unfolded protein binding;2.36208316042309e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.36736091234667e-08!GO:0044249;cellular biosynthetic process;2.7099741089023e-08!GO:0032940;secretion by cell;3.50882122119059e-08!GO:0005525;GTP binding;3.94674619711963e-08!GO:0048523;negative regulation of cellular process;4.06410444752528e-08!GO:0030163;protein catabolic process;4.86192620779221e-08!GO:0006461;protein complex assembly;5.28617639367272e-08!GO:0030029;actin filament-based process;5.34411295571182e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.02330482859206e-08!GO:0007242;intracellular signaling cascade;7.56835965575398e-08!GO:0000502;proteasome complex (sensu Eukaryota);7.81109222949409e-08!GO:0007399;nervous system development;1.02374651077567e-07!GO:0015630;microtubule cytoskeleton;1.26021811695432e-07!GO:0031252;leading edge;1.37934235527544e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93344352843546e-07!GO:0006913;nucleocytoplasmic transport;2.10465548267787e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;2.14399327569332e-07!GO:0007265;Ras protein signal transduction;2.61475785861455e-07!GO:0051169;nuclear transport;3.3352711558224e-07!GO:0003712;transcription cofactor activity;3.5564282834388e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.5564282834388e-07!GO:0009057;macromolecule catabolic process;4.39120584001746e-07!GO:0016568;chromatin modification;4.45422694775152e-07!GO:0044431;Golgi apparatus part;4.548561987435e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;4.61261828805424e-07!GO:0000375;RNA splicing, via transesterification reactions;4.61261828805424e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.61261828805424e-07!GO:0006446;regulation of translational initiation;5.00632796079374e-07!GO:0016881;acid-amino acid ligase activity;5.27379118316692e-07!GO:0051179;localization;5.88613046174661e-07!GO:0015986;ATP synthesis coupled proton transport;6.98105404829098e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.98105404829098e-07!GO:0016887;ATPase activity;7.13686594764193e-07!GO:0015631;tubulin binding;7.47989699093281e-07!GO:0050794;regulation of cellular process;7.50758364645615e-07!GO:0050789;regulation of biological process;8.13657502701571e-07!GO:0008287;protein serine/threonine phosphatase complex;8.52369524408471e-07!GO:0032561;guanyl ribonucleotide binding;8.83698228162377e-07!GO:0019001;guanyl nucleotide binding;8.83698228162377e-07!GO:0006323;DNA packaging;9.57201000354051e-07!GO:0008047;enzyme activator activity;1.03128032712659e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.07455677630649e-06!GO:0042623;ATPase activity, coupled;1.08655549635516e-06!GO:0031965;nuclear membrane;1.09841529361995e-06!GO:0019717;synaptosome;1.12349664427959e-06!GO:0051234;establishment of localization;1.1486331651936e-06!GO:0044248;cellular catabolic process;1.16357561115885e-06!GO:0003779;actin binding;1.22226244808651e-06!GO:0048519;negative regulation of biological process;1.39598498988894e-06!GO:0005096;GTPase activator activity;1.41357508249451e-06!GO:0051056;regulation of small GTPase mediated signal transduction;1.44068892103862e-06!GO:0006413;translational initiation;1.62815306340478e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65732903157478e-06!GO:0016564;transcription repressor activity;1.6595196094245e-06!GO:0003743;translation initiation factor activity;2.0471996797675e-06!GO:0043005;neuron projection;2.09639074749138e-06!GO:0048471;perinuclear region of cytoplasm;2.24783352648554e-06!GO:0044440;endosomal part;2.91749384302522e-06!GO:0010008;endosome membrane;2.91749384302522e-06!GO:0005635;nuclear envelope;2.94886046581266e-06!GO:0006259;DNA metabolic process;3.05263393073799e-06!GO:0005730;nucleolus;3.25551233303935e-06!GO:0005783;endoplasmic reticulum;3.84255194307128e-06!GO:0048475;coated membrane;4.40528011228101e-06!GO:0030117;membrane coat;4.40528011228101e-06!GO:0015935;small ribosomal subunit;4.46155299396392e-06!GO:0003676;nucleic acid binding;4.73433100885798e-06!GO:0006897;endocytosis;4.89285436103644e-06!GO:0010324;membrane invagination;4.89285436103644e-06!GO:0005874;microtubule;5.28791696359008e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.84464729772819e-06!GO:0005085;guanyl-nucleotide exchange factor activity;9.17295472905571e-06!GO:0051128;regulation of cellular component organization and biogenesis;1.02962672727573e-05!GO:0009060;aerobic respiration;1.06646948332153e-05!GO:0030136;clathrin-coated vesicle;1.28029003586878e-05!GO:0032446;protein modification by small protein conjugation;1.37877380561174e-05!GO:0005769;early endosome;1.74325255606978e-05!GO:0045786;negative regulation of progression through cell cycle;1.77813136805896e-05!GO:0006754;ATP biosynthetic process;2.04773862540336e-05!GO:0006753;nucleoside phosphate metabolic process;2.04773862540336e-05!GO:0045333;cellular respiration;2.0491902126054e-05!GO:0046034;ATP metabolic process;2.05965511928375e-05!GO:0030027;lamellipodium;2.13164501899725e-05!GO:0005905;coated pit;2.35538648618772e-05!GO:0051186;cofactor metabolic process;2.40016484046934e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.41170092893085e-05!GO:0005770;late endosome;2.53280772944876e-05!GO:0006366;transcription from RNA polymerase II promoter;2.96717216405716e-05!GO:0016567;protein ubiquitination;3.327165239022e-05!GO:0016301;kinase activity;3.36203247995616e-05!GO:0017038;protein import;3.4668647508498e-05!GO:0000139;Golgi membrane;3.77316571321309e-05!GO:0008017;microtubule binding;5.18505906256327e-05!GO:0015078;hydrogen ion transmembrane transporter activity;5.54123376329138e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.6260427110657e-05!GO:0009144;purine nucleoside triphosphate metabolic process;5.6260427110657e-05!GO:0009152;purine ribonucleotide biosynthetic process;5.96159178539684e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.9621309331524e-05!GO:0009199;ribonucleoside triphosphate metabolic process;6.5356736119671e-05!GO:0009150;purine ribonucleotide metabolic process;7.36778448466052e-05!GO:0006164;purine nucleotide biosynthetic process;7.39807314086537e-05!GO:0009141;nucleoside triphosphate metabolic process;7.50678466131629e-05!GO:0051276;chromosome organization and biogenesis;7.98883007160352e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.15066026197397e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.15066026197397e-05!GO:0008219;cell death;8.20549659193305e-05!GO:0016265;death;8.20549659193305e-05!GO:0006163;purine nucleotide metabolic process;8.26940042364301e-05!GO:0051246;regulation of protein metabolic process;8.68284699536437e-05!GO:0046578;regulation of Ras protein signal transduction;8.69430016613207e-05!GO:0009142;nucleoside triphosphate biosynthetic process;9.50031679592871e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.50031679592871e-05!GO:0004674;protein serine/threonine kinase activity;9.87347024891189e-05!GO:0003714;transcription corepressor activity;0.000101472729677976!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000107812400843023!GO:0015399;primary active transmembrane transporter activity;0.000107812400843023!GO:0006099;tricarboxylic acid cycle;0.000108186273564651!GO:0046356;acetyl-CoA catabolic process;0.000108186273564651!GO:0009966;regulation of signal transduction;0.000109215033141242!GO:0045259;proton-transporting ATP synthase complex;0.000111687802812672!GO:0043492;ATPase activity, coupled to movement of substances;0.000118203126462843!GO:0012501;programmed cell death;0.000121181287512632!GO:0015934;large ribosomal subunit;0.000121181287512632!GO:0000151;ubiquitin ligase complex;0.000122889115302877!GO:0006915;apoptosis;0.000130854865457521!GO:0006403;RNA localization;0.000141389533951043!GO:0009259;ribonucleotide metabolic process;0.00014428433754463!GO:0009055;electron carrier activity;0.000153423061891513!GO:0007266;Rho protein signal transduction;0.000157515532147623!GO:0000902;cell morphogenesis;0.000157747590634908!GO:0032989;cellular structure morphogenesis;0.000157747590634908!GO:0009892;negative regulation of metabolic process;0.000164491829286755!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000171118959406877!GO:0044453;nuclear membrane part;0.000186289235869386!GO:0050657;nucleic acid transport;0.000187094381894954!GO:0051236;establishment of RNA localization;0.000187094381894954!GO:0050658;RNA transport;0.000187094381894954!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00020673869685715!GO:0030120;vesicle coat;0.000213208466332838!GO:0030662;coated vesicle membrane;0.000213208466332838!GO:0043566;structure-specific DNA binding;0.000213638620617632!GO:0000159;protein phosphatase type 2A complex;0.000220108145338657!GO:0009109;coenzyme catabolic process;0.000233614519464225!GO:0016481;negative regulation of transcription;0.000235507109331151!GO:0000245;spliceosome assembly;0.000235507109331151!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000253624108957116!GO:0009260;ribonucleotide biosynthetic process;0.00027284410901976!GO:0003729;mRNA binding;0.00027578536519833!GO:0004721;phosphoprotein phosphatase activity;0.000278010787532453!GO:0005798;Golgi-associated vesicle;0.000293126642980771!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000296988584721936!GO:0005761;mitochondrial ribosome;0.000302664831563731!GO:0000313;organellar ribosome;0.000302664831563731!GO:0005643;nuclear pore;0.000304443273821508!GO:0007049;cell cycle;0.000345930423889115!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000357005745877063!GO:0006606;protein import into nucleus;0.000397888917988023!GO:0051187;cofactor catabolic process;0.000407731810787253!GO:0019208;phosphatase regulator activity;0.000416975027623486!GO:0051170;nuclear import;0.000485138396734221!GO:0048489;synaptic vesicle transport;0.000493588151059243!GO:0006084;acetyl-CoA metabolic process;0.000512536820936825!GO:0016311;dephosphorylation;0.0005141949456519!GO:0005938;cell cortex;0.000517730049746628!GO:0008026;ATP-dependent helicase activity;0.000534941824538012!GO:0016791;phosphoric monoester hydrolase activity;0.000565419736865592!GO:0065007;biological regulation;0.00056549806190381!GO:0022890;inorganic cation transmembrane transporter activity;0.000588871703558666!GO:0051726;regulation of cell cycle;0.000612359869700864!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00062717850168607!GO:0008601;protein phosphatase type 2A regulator activity;0.00066240216556756!GO:0031072;heat shock protein binding;0.000700919463668599!GO:0043623;cellular protein complex assembly;0.000706539727332745!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000741006872510638!GO:0004386;helicase activity;0.000762504619916079!GO:0005793;ER-Golgi intermediate compartment;0.000769589667403316!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000777085119489597!GO:0019904;protein domain specific binding;0.00078841550955178!GO:0016197;endosome transport;0.000802685070199189!GO:0006613;cotranslational protein targeting to membrane;0.000833275600515854!GO:0030425;dendrite;0.000845702712458805!GO:0006607;NLS-bearing substrate import into nucleus;0.000891676723759383!GO:0007019;microtubule depolymerization;0.000893375721476067!GO:0001726;ruffle;0.000904424045668907!GO:0006732;coenzyme metabolic process;0.000907850834892927!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000928744176343261!GO:0000074;regulation of progression through cell cycle;0.000962572243771177!GO:0003724;RNA helicase activity;0.000973550305131243!GO:0031324;negative regulation of cellular metabolic process;0.000979615963193011!GO:0030118;clathrin coat;0.000989436159525556!GO:0019902;phosphatase binding;0.000991185892170585!GO:0031901;early endosome membrane;0.000994770122279882!GO:0005875;microtubule associated complex;0.00101672856388689!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00103213178391817!GO:0005741;mitochondrial outer membrane;0.001040116917847!GO:0044432;endoplasmic reticulum part;0.00107657326303583!GO:0006888;ER to Golgi vesicle-mediated transport;0.00109128221064538!GO:0006402;mRNA catabolic process;0.00109221416052389!GO:0003697;single-stranded DNA binding;0.00111924860583657!GO:0051087;chaperone binding;0.00112335987796471!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00116355206581201!GO:0045892;negative regulation of transcription, DNA-dependent;0.00116476117839304!GO:0048468;cell development;0.00120487768247755!GO:0005773;vacuole;0.00126074067492547!GO:0016740;transferase activity;0.00127081606316829!GO:0006470;protein amino acid dephosphorylation;0.00133542433878582!GO:0003713;transcription coactivator activity;0.00134785786760772!GO:0030133;transport vesicle;0.00134785786760772!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00136243825354447!GO:0008154;actin polymerization and/or depolymerization;0.00137390254234381!GO:0016050;vesicle organization and biogenesis;0.00138014134846376!GO:0030867;rough endoplasmic reticulum membrane;0.00138034837989465!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00138968480487669!GO:0019888;protein phosphatase regulator activity;0.00153934276769311!GO:0004722;protein serine/threonine phosphatase activity;0.00158997411576299!GO:0009056;catabolic process;0.00161035923337704!GO:0022406;membrane docking;0.00170376455527547!GO:0048278;vesicle docking;0.00170376455527547!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00180238273284389!GO:0051028;mRNA transport;0.00186064401204712!GO:0008286;insulin receptor signaling pathway;0.00187826870258544!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00200170117482089!GO:0004812;aminoacyl-tRNA ligase activity;0.00200170117482089!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00200170117482089!GO:0006904;vesicle docking during exocytosis;0.00202922342390638!GO:0051188;cofactor biosynthetic process;0.00219237702735342!GO:0005099;Ras GTPase activator activity;0.00219293915022976!GO:0005791;rough endoplasmic reticulum;0.00227786459028069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00250230504126393!GO:0006333;chromatin assembly or disassembly;0.00253404761056452!GO:0031114;regulation of microtubule depolymerization;0.00268724867199898!GO:0007026;negative regulation of microtubule depolymerization;0.00268724867199898!GO:0030532;small nuclear ribonucleoprotein complex;0.00269750819214192!GO:0005813;centrosome;0.00269864595786194!GO:0005100;Rho GTPase activator activity;0.00274513849029518!GO:0006892;post-Golgi vesicle-mediated transport;0.00304018073314831!GO:0045055;regulated secretory pathway;0.0032221967599369!GO:0008139;nuclear localization sequence binding;0.003253894114758!GO:0019867;outer membrane;0.00326533139636052!GO:0051261;protein depolymerization;0.00330216445202033!GO:0031968;organelle outer membrane;0.00334109832886594!GO:0008021;synaptic vesicle;0.00352079862045309!GO:0007017;microtubule-based process;0.00355149968886391!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.00355614357045264!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00361661682520794!GO:0004672;protein kinase activity;0.00362626450778508!GO:0043038;amino acid activation;0.00364224994735842!GO:0006418;tRNA aminoacylation for protein translation;0.00364224994735842!GO:0043039;tRNA aminoacylation;0.00364224994735842!GO:0043069;negative regulation of programmed cell death;0.00384071684810653!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00384984539717517!GO:0016363;nuclear matrix;0.00386940656725825!GO:0043066;negative regulation of apoptosis;0.00399516052818315!GO:0006916;anti-apoptosis;0.00416326323285397!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00418020029242195!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00418020029242195!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00418020029242195!GO:0006650;glycerophospholipid metabolic process;0.00462232653955901!GO:0007272;ensheathment of neurons;0.00476434711949949!GO:0008366;axon ensheathment;0.00476434711949949!GO:0044448;cell cortex part;0.0048228990293507!GO:0050767;regulation of neurogenesis;0.00483223957967464!GO:0006887;exocytosis;0.0049711778589468!GO:0051168;nuclear export;0.00506812123580703!GO:0006468;protein amino acid phosphorylation;0.00556377103688462!GO:0043209;myelin sheath;0.00558474932211334!GO:0006752;group transfer coenzyme metabolic process;0.00581829452168767!GO:0005815;microtubule organizing center;0.0058562152133488!GO:0043087;regulation of GTPase activity;0.00599546194557256!GO:0042802;identical protein binding;0.00622897268483759!GO:0033673;negative regulation of kinase activity;0.00632630008985014!GO:0006469;negative regulation of protein kinase activity;0.00632630008985014!GO:0031902;late endosome membrane;0.00642604935240009!GO:0051427;hormone receptor binding;0.00642604935240009!GO:0008654;phospholipid biosynthetic process;0.00647446901692469!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00657306322027983!GO:0003690;double-stranded DNA binding;0.00664589899500016!GO:0000323;lytic vacuole;0.00665518680724174!GO:0005764;lysosome;0.00665518680724174!GO:0007243;protein kinase cascade;0.00665518680724174!GO:0015629;actin cytoskeleton;0.00668802033123759!GO:0042578;phosphoric ester hydrolase activity;0.0067865662641859!GO:0048487;beta-tubulin binding;0.00689589055055269!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00690153027158258!GO:0015980;energy derivation by oxidation of organic compounds;0.00696203792493813!GO:0032011;ARF protein signal transduction;0.00730293694489671!GO:0032012;regulation of ARF protein signal transduction;0.00730293694489671!GO:0050811;GABA receptor binding;0.00741873922833628!GO:0030426;growth cone;0.00741873922833628!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0075971407599884!GO:0006612;protein targeting to membrane;0.00760567843638953!GO:0005048;signal sequence binding;0.00796988734110223!GO:0046467;membrane lipid biosynthetic process;0.00800167224817645!GO:0009108;coenzyme biosynthetic process;0.00819326063086186!GO:0030041;actin filament polymerization;0.00819326063086186!GO:0030427;site of polarized growth;0.00850426073465363!GO:0030258;lipid modification;0.00850640058784855!GO:0008361;regulation of cell size;0.00850640058784855!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00850640058784855!GO:0055083;monovalent inorganic anion homeostasis;0.00850640058784855!GO:0055064;chloride ion homeostasis;0.00850640058784855!GO:0030644;cellular chloride ion homeostasis;0.00850640058784855!GO:0005789;endoplasmic reticulum membrane;0.00856632316436607!GO:0035023;regulation of Rho protein signal transduction;0.00869438516933477!GO:0050839;cell adhesion molecule binding;0.00882163933316811!GO:0051348;negative regulation of transferase activity;0.00908018619113259!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00936291121312503!GO:0033043;regulation of organelle organization and biogenesis;0.00936291121312503!GO:0005516;calmodulin binding;0.00939364442574209!GO:0007269;neurotransmitter secretion;0.0094456938854126!GO:0001508;regulation of action potential;0.00954612198675235!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00994523695250494!GO:0004667;prostaglandin-D synthase activity;0.00994523695250494!GO:0050802;circadian sleep/wake cycle, sleep;0.00994523695250494!GO:0022410;circadian sleep/wake cycle process;0.00994523695250494!GO:0042749;regulation of circadian sleep/wake cycle;0.00994523695250494!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0102714007161897!GO:0035257;nuclear hormone receptor binding;0.0104986334085597!GO:0051020;GTPase binding;0.0104986334085597!GO:0019887;protein kinase regulator activity;0.0109610203825458!GO:0012506;vesicle membrane;0.0111505277872539!GO:0006891;intra-Golgi vesicle-mediated transport;0.0111505277872539!GO:0051252;regulation of RNA metabolic process;0.0113206895506669!GO:0008186;RNA-dependent ATPase activity;0.0116302872901342!GO:0005885;Arp2/3 protein complex;0.0129024229099138!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0130901274363113!GO:0005839;proteasome core complex (sensu Eukaryota);0.0133043644070946!GO:0005869;dynactin complex;0.013938251362741!GO:0046930;pore complex;0.0140202543983079!GO:0019783;small conjugating protein-specific protease activity;0.0145650590712032!GO:0005667;transcription factor complex;0.0146932078200931!GO:0000118;histone deacetylase complex;0.0147959418306207!GO:0000059;protein import into nucleus, docking;0.0149103877733308!GO:0035035;histone acetyltransferase binding;0.0149574814229594!GO:0019903;protein phosphatase binding;0.0149574814229594!GO:0051920;peroxiredoxin activity;0.0151496228029353!GO:0065009;regulation of a molecular function;0.015172803714589!GO:0030424;axon;0.0154799066629831!GO:0031124;mRNA 3'-end processing;0.0158226710058282!GO:0008022;protein C-terminus binding;0.0158269620614402!GO:0006643;membrane lipid metabolic process;0.0158269620614402!GO:0046488;phosphatidylinositol metabolic process;0.0159696531296921!GO:0030132;clathrin coat of coated pit;0.0161604268680672!GO:0004843;ubiquitin-specific protease activity;0.0168301881207532!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0168301881207532!GO:0006401;RNA catabolic process;0.0170319727380159!GO:0000287;magnesium ion binding;0.0172570402919712!GO:0051789;response to protein stimulus;0.0174052091445522!GO:0006986;response to unfolded protein;0.0174052091445522!GO:0043021;ribonucleoprotein binding;0.017519921863248!GO:0030742;GTP-dependent protein binding;0.0177099553349611!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0177099553349611!GO:0019198;transmembrane receptor protein phosphatase activity;0.0177099553349611!GO:0016049;cell growth;0.0180506233918312!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0187909340621651!GO:0022402;cell cycle process;0.019185391409367!GO:0017166;vinculin binding;0.0193762589610254!GO:0043086;negative regulation of catalytic activity;0.0198692875890072!GO:0048500;signal recognition particle;0.0202086774071777!GO:0030384;phosphoinositide metabolic process;0.0203111028603453!GO:0019222;regulation of metabolic process;0.020332792191853!GO:0030660;Golgi-associated vesicle membrane;0.0207566833322824!GO:0005856;cytoskeleton;0.0210050429062338!GO:0007050;cell cycle arrest;0.0212123800406888!GO:0043488;regulation of mRNA stability;0.0213401921124032!GO:0043487;regulation of RNA stability;0.0213401921124032!GO:0030658;transport vesicle membrane;0.0222122716000737!GO:0044433;cytoplasmic vesicle part;0.0222645538436247!GO:0051540;metal cluster binding;0.0223663551105978!GO:0051536;iron-sulfur cluster binding;0.0223663551105978!GO:0006414;translational elongation;0.0227914326425021!GO:0006974;response to DNA damage stimulus;0.0230411200607257!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0239757062560955!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0242391630295721!GO:0005545;phosphatidylinositol binding;0.0248672819408597!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0253625458845598!GO:0045296;cadherin binding;0.0257005186123533!GO:0042026;protein refolding;0.0257005186123533!GO:0035258;steroid hormone receptor binding;0.0257005186123533!GO:0004221;ubiquitin thiolesterase activity;0.0257598565734311!GO:0042254;ribosome biogenesis and assembly;0.0259116171373107!GO:0031267;small GTPase binding;0.0260138713942934!GO:0005092;GDP-dissociation inhibitor activity;0.0264438792679522!GO:0030054;cell junction;0.0267811404042089!GO:0019207;kinase regulator activity;0.0269650645459518!GO:0006376;mRNA splice site selection;0.0282594598870135!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0282594598870135!GO:0004004;ATP-dependent RNA helicase activity;0.0283247626813238!GO:0065002;intracellular protein transport across a membrane;0.028795727169105!GO:0005089;Rho guanyl-nucleotide exchange factor activity;0.028795727169105!GO:0032535;regulation of cellular component size;0.0297098179138203!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0297098179138203!GO:0048167;regulation of synaptic plasticity;0.0297844522980107!GO:0022008;neurogenesis;0.0299464339062174!GO:0030119;AP-type membrane coat adaptor complex;0.0302567142389883!GO:0005774;vacuolar membrane;0.0304858357851231!GO:0030137;COPI-coated vesicle;0.0306320757150435!GO:0048699;generation of neurons;0.0312903396260217!GO:0007034;vacuolar transport;0.0316097612889364!GO:0000062;acyl-CoA binding;0.0316097612889364!GO:0006338;chromatin remodeling;0.0316268591309571!GO:0031109;microtubule polymerization or depolymerization;0.0319560526549967!GO:0051539;4 iron, 4 sulfur cluster binding;0.0329164059477665!GO:0019911;structural constituent of myelin sheath;0.0332890727449386!GO:0005868;cytoplasmic dynein complex;0.0332890727449386!GO:0003725;double-stranded RNA binding;0.0333508838025561!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.03340865192905!GO:0003746;translation elongation factor activity;0.0336096208866431!GO:0001666;response to hypoxia;0.034442357629365!GO:0001578;microtubule bundle formation;0.0358501836292082!GO:0016579;protein deubiquitination;0.0361580790288858!GO:0032318;regulation of Ras GTPase activity;0.0363791563289771!GO:0030832;regulation of actin filament length;0.0364791333789473!GO:0016585;chromatin remodeling complex;0.0365595193716747!GO:0006665;sphingolipid metabolic process;0.0365952562603558!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0366466056213311!GO:0017016;Ras GTPase binding;0.0378600252519957!GO:0030131;clathrin adaptor complex;0.0380137320102361!GO:0016563;transcription activator activity;0.038032287163288!GO:0042995;cell projection;0.0382237627820648!GO:0008088;axon cargo transport;0.0388014832036428!GO:0019894;kinesin binding;0.0388736662773229!GO:0030911;TPR domain binding;0.0389569409326087!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0391598236614016!GO:0004298;threonine endopeptidase activity;0.0397457736555745!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0400339895829472!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0400339895829472!GO:0048154;S100 beta binding;0.0413065361345013!GO:0031123;RNA 3'-end processing;0.0427648485274703!GO:0016859;cis-trans isomerase activity;0.0432977392742557!GO:0003682;chromatin binding;0.0444881185710813!GO:0051287;NAD binding;0.0445541169632157!GO:0030125;clathrin vesicle coat;0.0457245920993798!GO:0030665;clathrin coated vesicle membrane;0.0457245920993798!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0462942822595067!GO:0031371;ubiquitin conjugating enzyme complex;0.0466950938358802!GO:0042552;myelination;0.0477538757259896!GO:0009117;nucleotide metabolic process;0.0477538757259896!GO:0043407;negative regulation of MAP kinase activity;0.0478017583089051!GO:0031628;opioid receptor binding;0.0493920034133142!GO:0031852;mu-type opioid receptor binding;0.0493920034133142 | |||
|sample_id=10163 | |sample_id=10163 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=occipital cortex | |sample_tissue=occipital cortex | ||
|top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733 | |top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10163-103B1;search_select_hide=table117:FF:10163-103B1 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | occipital cortex, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12320 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12320
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12320
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0607 |
| 10 | 10 | 0.0619 |
| 100 | 100 | 0.401 |
| 101 | 101 | 0.586 |
| 102 | 102 | 0.977 |
| 103 | 103 | 0.0634 |
| 104 | 104 | 0.149 |
| 105 | 105 | 0.109 |
| 106 | 106 | 0.0535 |
| 107 | 107 | 0.115 |
| 108 | 108 | 0.943 |
| 109 | 109 | 0.00144 |
| 11 | 11 | 0.0142 |
| 110 | 110 | 0.0484 |
| 111 | 111 | 0.221 |
| 112 | 112 | 0.325 |
| 113 | 113 | 0.579 |
| 114 | 114 | 0.19 |
| 115 | 115 | 0.943 |
| 116 | 116 | 0.133 |
| 117 | 117 | 0.0118 |
| 118 | 118 | 0.143 |
| 119 | 119 | 0.287 |
| 12 | 12 | 0.433 |
| 120 | 120 | 0.209 |
| 121 | 121 | 0.247 |
| 122 | 122 | 0.797 |
| 123 | 123 | 0.306 |
| 124 | 124 | 0.201 |
| 125 | 125 | 0.29 |
| 126 | 126 | 0.0267 |
| 127 | 127 | 0.401 |
| 128 | 128 | 0.197 |
| 129 | 129 | 0.567 |
| 13 | 13 | 0.00167 |
| 130 | 130 | 0.121 |
| 131 | 131 | 0.0673 |
| 132 | 132 | 0.555 |
| 133 | 133 | 0.127 |
| 134 | 134 | 0.591 |
| 135 | 135 | 0.322 |
| 136 | 136 | 0.00119 |
| 137 | 137 | 0.931 |
| 138 | 138 | 0.947 |
| 139 | 139 | 0.15 |
| 14 | 14 | 0.793 |
| 140 | 140 | 0.916 |
| 141 | 141 | 0.464 |
| 142 | 142 | 0.53 |
| 143 | 143 | 0.0928 |
| 144 | 144 | 0.922 |
| 145 | 145 | 0.144 |
| 146 | 146 | 0.506 |
| 147 | 147 | 0.903 |
| 148 | 148 | 0.241 |
| 149 | 149 | 0.161 |
| 15 | 15 | 0.105 |
| 150 | 150 | 0.157 |
| 151 | 151 | 0.673 |
| 152 | 152 | 0.0806 |
| 153 | 153 | 0.7 |
| 154 | 154 | 0.428 |
| 155 | 155 | 0.855 |
| 156 | 156 | 0.556 |
| 157 | 157 | 0.42 |
| 158 | 158 | 0.139 |
| 159 | 159 | 0.015 |
| 16 | 16 | 0.0303 |
| 160 | 160 | 0.232 |
| 161 | 161 | 0.252 |
| 162 | 162 | 0.621 |
| 163 | 163 | 0.721 |
| 164 | 164 | 0.0576 |
| 165 | 165 | 0.0707 |
| 166 | 166 | 0.865 |
| 167 | 167 | 0.814 |
| 168 | 168 | 0.42 |
| 169 | 169 | 0.0112 |
| 17 | 17 | 0.11 |
| 18 | 18 | 0.0762 |
| 19 | 19 | 0.207 |
| 2 | 2 | 0.801 |
| 20 | 20 | 0.202 |
| 21 | 21 | 0.0494 |
| 22 | 22 | 0.184 |
| 23 | 23 | 0.458 |
| 24 | 24 | 0.0219 |
| 25 | 25 | 0.443 |
| 26 | 26 | 5.56588e-4 |
| 27 | 27 | 0.625 |
| 28 | 28 | 0.654 |
| 29 | 29 | 0.00622 |
| 3 | 3 | 0.0513 |
| 30 | 30 | 0.869 |
| 31 | 31 | 0.918 |
| 32 | 32 | 0.0156 |
| 33 | 33 | 0.0501 |
| 34 | 34 | 0.636 |
| 35 | 35 | 0.596 |
| 36 | 36 | 0.16 |
| 37 | 37 | 0.0351 |
| 38 | 38 | 0.386 |
| 39 | 39 | 0.29 |
| 4 | 4 | 0.823 |
| 40 | 40 | 0.0282 |
| 41 | 41 | 0.277 |
| 42 | 42 | 0.229 |
| 43 | 43 | 0.133 |
| 44 | 44 | 0.132 |
| 45 | 45 | 0.656 |
| 46 | 46 | 0.063 |
| 47 | 47 | 0.0652 |
| 48 | 48 | 0.0675 |
| 49 | 49 | 0.293 |
| 5 | 5 | 0.753 |
| 50 | 50 | 0.438 |
| 51 | 51 | 0.364 |
| 52 | 52 | 0.543 |
| 53 | 53 | 0.734 |
| 54 | 54 | 0.373 |
| 55 | 55 | 0.774 |
| 56 | 56 | 0.461 |
| 57 | 57 | 0.43 |
| 58 | 58 | 0.302 |
| 59 | 59 | 0.0606 |
| 6 | 6 | 0.836 |
| 60 | 60 | 0.0785 |
| 61 | 61 | 0.077 |
| 62 | 62 | 0.17 |
| 63 | 63 | 0.244 |
| 64 | 64 | 0.196 |
| 65 | 65 | 0.271 |
| 66 | 66 | 0.169 |
| 67 | 67 | 0.433 |
| 68 | 68 | 0.152 |
| 69 | 69 | 0.417 |
| 7 | 7 | 0.0606 |
| 70 | 70 | 0.0574 |
| 71 | 71 | 0.00979 |
| 72 | 72 | 0.296 |
| 73 | 73 | 0.0249 |
| 74 | 74 | 0.956 |
| 75 | 75 | 0.0395 |
| 76 | 76 | 0.529 |
| 77 | 77 | 0.127 |
| 78 | 78 | 0.0047 |
| 79 | 79 | 0.4 |
| 8 | 8 | 0.0565 |
| 80 | 80 | 0.373 |
| 81 | 81 | 0.603 |
| 82 | 82 | 0.513 |
| 83 | 83 | 0.0695 |
| 84 | 84 | 0.723 |
| 85 | 85 | 0.225 |
| 86 | 86 | 0.233 |
| 87 | 87 | 5.05946e-5 |
| 88 | 88 | 0.738 |
| 89 | 89 | 0.258 |
| 9 | 9 | 0.301 |
| 90 | 90 | 0.0831 |
| 91 | 91 | 0.841 |
| 92 | 92 | 0.532 |
| 93 | 93 | 0.867 |
| 94 | 94 | 0.193 |
| 95 | 95 | 0.00869 |
| 96 | 96 | 0.894 |
| 97 | 97 | 0.762 |
| 98 | 98 | 0.267 |
| 99 | 99 | 0.552 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12320
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010163 occipital cortex - adult donor
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010163 (occipital cortex - adult donor)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
