FF:10175-103C4: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	globus pallidus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13801
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	globus pallidus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005967

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13801		CAGE		DRX008658		DRR009530

Accession ID Hg19

Library id		BAM		CTSS
CNhs13801		DRZ000955		DRZ002340

Accession ID Hg38

Library id		BAM		CTSS
CNhs13801		DRZ012305		DRZ013690

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.204
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.636
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.342
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.204
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.183
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.343
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.623
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0636
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.848
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.122
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.204
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.764
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.602
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.343
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.204
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0596
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.277
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.663
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.204
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.597
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.331
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.153
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.204
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.343
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.204
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.447
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.602
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.204
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13801

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0443
MA0003.1	MA0003.1	0.283
MA0004.1	MA0004.1	0.336
MA0006.1	MA0006.1	0.341
MA0007.1	MA0007.1	0.784
MA0009.1	MA0009.1	0.197
MA0014.1	MA0014.1	0.73
MA0017.1	MA0017.1	0.0175
MA0018.2	MA0018.2	0.0528
MA0019.1	MA0019.1	0.803
MA0024.1	MA0024.1	0.819
MA0025.1	MA0025.1	0.273
MA0027.1	MA0027.1	0.362
MA0028.1	MA0028.1	0.0704
MA0029.1	MA0029.1	0.0731
MA0030.1	MA0030.1	0.204
MA0031.1	MA0031.1	0.769
MA0035.2	MA0035.2	0.0594
MA0038.1	MA0038.1	0.134
MA0039.2	MA0039.2	0.218
MA0040.1	MA0040.1	0.712
MA0041.1	MA0041.1	0.488
MA0042.1	MA0042.1	0.43
MA0043.1	MA0043.1	0.349
MA0046.1	MA0046.1	0.0199
MA0047.2	MA0047.2	0.311
MA0048.1	MA0048.1	0.0788
MA0050.1	MA0050.1	0.0632
MA0051.1	MA0051.1	0.23
MA0052.1	MA0052.1	0.407
MA0055.1	MA0055.1	0.00102
MA0057.1	MA0057.1	0.912
MA0058.1	MA0058.1	0.399
MA0059.1	MA0059.1	0.103
MA0060.1	MA0060.1	0.391
MA0061.1	MA0061.1	0.0043
MA0062.2	MA0062.2	0.00279
MA0065.2	MA0065.2	0.00354
MA0066.1	MA0066.1	0.0187
MA0067.1	MA0067.1	0.444
MA0068.1	MA0068.1	0.442
MA0069.1	MA0069.1	0.886
MA0070.1	MA0070.1	0.374
MA0071.1	MA0071.1	0.0172
MA0072.1	MA0072.1	0.611
MA0073.1	MA0073.1	0.42
MA0074.1	MA0074.1	0.246
MA0076.1	MA0076.1	0.115
MA0077.1	MA0077.1	0.00314
MA0078.1	MA0078.1	0.318
MA0079.2	MA0079.2	0.834
MA0080.2	MA0080.2	5.22509e-8
MA0081.1	MA0081.1	0.0186
MA0083.1	MA0083.1	0.118
MA0084.1	MA0084.1	0.129
MA0087.1	MA0087.1	0.122
MA0088.1	MA0088.1	0.151
MA0090.1	MA0090.1	0.159
MA0091.1	MA0091.1	0.488
MA0092.1	MA0092.1	0.361
MA0093.1	MA0093.1	0.372
MA0099.2	MA0099.2	3.30317e-16
MA0100.1	MA0100.1	0.418
MA0101.1	MA0101.1	0.00454
MA0102.2	MA0102.2	0.237
MA0103.1	MA0103.1	0.0935
MA0104.2	MA0104.2	0.462
MA0105.1	MA0105.1	3.49989e-4
MA0106.1	MA0106.1	0.0358
MA0107.1	MA0107.1	0.00446
MA0108.2	MA0108.2	0.676
MA0111.1	MA0111.1	0.672
MA0112.2	MA0112.2	0.00137
MA0113.1	MA0113.1	0.617
MA0114.1	MA0114.1	0.0131
MA0115.1	MA0115.1	0.962
MA0116.1	MA0116.1	0.00389
MA0117.1	MA0117.1	0.81
MA0119.1	MA0119.1	0.102
MA0122.1	MA0122.1	0.51
MA0124.1	MA0124.1	0.855
MA0125.1	MA0125.1	0.135
MA0131.1	MA0131.1	0.813
MA0135.1	MA0135.1	0.00679
MA0136.1	MA0136.1	4.4499e-12
MA0137.2	MA0137.2	0.0173
MA0138.2	MA0138.2	0.297
MA0139.1	MA0139.1	0.357
MA0140.1	MA0140.1	0.0355
MA0141.1	MA0141.1	0.0181
MA0142.1	MA0142.1	0.452
MA0143.1	MA0143.1	0.078
MA0144.1	MA0144.1	0.957
MA0145.1	MA0145.1	0.328
MA0146.1	MA0146.1	0.00812
MA0147.1	MA0147.1	0.335
MA0148.1	MA0148.1	0.307
MA0149.1	MA0149.1	0.0356
MA0150.1	MA0150.1	5.37709e-4
MA0152.1	MA0152.1	0.891
MA0153.1	MA0153.1	0.566
MA0154.1	MA0154.1	0.0389
MA0155.1	MA0155.1	0.711
MA0156.1	MA0156.1	1.45394e-7
MA0157.1	MA0157.1	0.651
MA0159.1	MA0159.1	0.0356
MA0160.1	MA0160.1	0.0924
MA0162.1	MA0162.1	0.155
MA0163.1	MA0163.1	3.82954e-7
MA0164.1	MA0164.1	0.848
MA0258.1	MA0258.1	0.0224
MA0259.1	MA0259.1	0.876

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13801

Novel motif	Logo	P-value
1	1	0.0574
10	10	0.0323
100	100	0.287
101	101	0.646
102	102	0.803
103	103	0.0592
104	104	0.0463
105	105	0.12
106	106	0.0271
107	107	0.158
108	108	0.932
109	109	0.00337
11	11	0.012
110	110	0.0524
111	111	0.233
112	112	0.426
113	113	0.353
114	114	0.252
115	115	0.606
116	116	0.0889
117	117	0.00539
118	118	0.192
119	119	0.198
12	12	0.545
120	120	0.109
121	121	0.3
122	122	0.769
123	123	0.803
124	124	0.155
125	125	0.631
126	126	0.0937
127	127	0.502
128	128	0.237
129	129	0.631
13	13	0.00233
130	130	0.18
131	131	0.00901
132	132	0.58
133	133	4.34902e-4
134	134	0.809
135	135	0.0868
136	136	0.00438
137	137	0.662
138	138	0.859
139	139	0.219
14	14	0.883
140	140	0.841
141	141	0.34
142	142	0.969
143	143	0.0224
144	144	0.918
145	145	0.262
146	146	0.492
147	147	0.731
148	148	0.556
149	149	0.235
15	15	0.0721
150	150	0.138
151	151	0.658
152	152	0.0757
153	153	0.911
154	154	0.275
155	155	0.633
156	156	0.858
157	157	0.546
158	158	0.272
159	159	0.033
16	16	0.043
160	160	0.285
161	161	0.166
162	162	0.733
163	163	0.621
164	164	0.00435
165	165	0.054
166	166	0.843
167	167	0.817
168	168	0.446
169	169	0.0139
17	17	0.111
18	18	0.0834
19	19	0.279
2	2	0.842
20	20	0.0842
21	21	0.0491
22	22	0.202
23	23	0.556
24	24	0.0255
25	25	0.499
26	26	6.76e-4
27	27	0.849
28	28	0.872
29	29	0.00502
3	3	0.0252
30	30	0.832
31	31	0.836
32	32	0.0167
33	33	0.0711
34	34	0.7
35	35	0.575
36	36	0.272
37	37	0.0257
38	38	0.39
39	39	0.326
4	4	0.927
40	40	0.112
41	41	0.562
42	42	0.236
43	43	0.131
44	44	0.0754
45	45	0.741
46	46	0.0269
47	47	0.07
48	48	0.0315
49	49	0.227
5	5	0.994
50	50	0.359
51	51	0.438
52	52	0.703
53	53	0.821
54	54	0.426
55	55	0.578
56	56	0.548
57	57	0.306
58	58	0.345
59	59	0.0438
6	6	0.902
60	60	0.0896
61	61	0.0573
62	62	0.228
63	63	0.277
64	64	0.169
65	65	0.28
66	66	0.124
67	67	0.22
68	68	0.313
69	69	0.53
7	7	0.0965
70	70	0.0281
71	71	0.00963
72	72	0.317
73	73	0.0338
74	74	0.992
75	75	0.0102
76	76	0.287
77	77	0.12
78	78	0.00557
79	79	0.174
8	8	0.0571
80	80	0.6
81	81	0.458
82	82	0.753
83	83	0.0758
84	84	0.479
85	85	0.447
86	86	0.14
87	87	7.83453e-4
88	88	0.642
89	89	0.317
9	9	0.451
90	90	0.146
91	91	0.681
92	92	0.641
93	93	0.771
94	94	0.152
95	95	0.0265
96	96	0.872
97	97	0.763
98	98	0.173
99	99	0.491

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13801

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010161 human globus pallidus - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0001875 (globus pallidus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0006514 (pallidum)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010161 (human globus pallidus - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005967
+|accession_numbers=CAGE;DRX008658;DRR009530;DRZ000955;DRZ002340;DRZ012305;DRZ013690
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0001875,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0006514,UBERON:0010011,UBERON:0000454
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.87!748.12!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.74!553.59!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!163.31!PEG3;;chr21:34442540..34442560,+!p2@OLIG1!2.20!158.51!OLIG1;;chr21:34398234..34398250,+!p1@OLIG2!2.16!142.30!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!2.15!288.80!C11orf9;;chr10:48355030..48355090,+!p1@ZNF488!2.08!151.91!ZNF488;;chr2:145277882..145277967,-!p3@ZEB2!1.93!140.50!ZEB2;;chr8:53322304..53322340,-!p1@ST18!1.93!84.66!ST18;;chr22:38380543..38380569,-!p1@SOX10!1.91!81.06!SOX10;;chr15:80735246..80735321,+!p3@ARNT2!1.86!71.45!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.78!149.50!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.76!56.44!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.75!55.24!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.74!54.04!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.71!49.83!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.68!46.83!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!43.83!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.65!43.23!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.62!46.23!HLF;;chr9:77112244..77112262,+!p1@RORB!1.61!44.43!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.59!52.84!PROX1;;chr2:60781201..60781258,-!p3@BCL11A!1.52!31.82!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.51!31.22!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.50!41.43!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.47!BHLHE41;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.22!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.23!ARNT2;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.62!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.45!38.43!ZBTB16;;chr19:30863271..30863338,+!p1@ZNF536!1.42!25.22!ZNF536;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.22!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.39!23.42!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.82!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.42!SOX18;;chr14:29234581..29234601,+!p2@FOXG1!1.37!22.22!FOXG1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.62!ZBED1;;chr10:64134120..64134183,+!p1@ZNF365!1.34!25.22!ZNF365;;chr21:34442584..34442587,+!p3@OLIG1!1.34!21.01!OLIG1;;chr3:126076242..126076257,-!p1@KLF15!1.33!25.22!KLF15;;chr14:33408072..33408114,+!p2@NPAS3!1.33!24.02!NPAS3;;chr12:103351444..103351461,+!p1@ASCL1!1.33!20.41!ASCL1;;chr14:33403881..33403924,+!p1@NPAS3!1.32!19.81!NPAS3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.32!19.81!SMARCE1;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.42!CSRNP3;;chr19:46800289..46800327,+!p2@HIF3A!1.28!18.01!HIF3A;;chr13:72441315..72441454,-!p1@DACH1!1.27!34.82!DACH1;;chr10:118897911..118897974,-!p1@VAX1!1.27!17.41!VAX1;;chr7:28725740..28725778,+!p1@CREB5!1.26!150.71!CREB5;;chr12:106976656..106976672,+!p4@RFX4!1.25!16.81!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!1.25!16.81!FOXG1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.21!ZNF727;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.24!16.21!POU3F3;;chr4:81118647..81118666,+!p1@PRDM8!1.22!20.41!PRDM8;;chrX:82763292..82763317,+!p1@POU3F4!1.22!15.61!POU3F4;;chr10:111987079..111987115,+!p3@MXI1!1.21!21.01!MXI1;;chr19:21512202..21512225,-!p1@ZNF708!1.20!75.05!ZNF708;;chr2:2334997..2335053,-!p1@MYT1L!1.20!15.01!MYT1L;;chr2:45168997..45169020,+!p4@SIX3!1.20!15.01!SIX3;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.84!BCL6;;chr10:64134045..64134083,+!p3@ZNF365!1.17!13.81!ZNF365;;chr7:115670804..115670825,-!p1@TFEC!1.17!13.81!TFEC;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.81!ZNF540;;chr18:55102598..55102623,+!p1@ONECUT2!1.15!13.21!ONECUT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!13.21!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!1.15!13.21!RBPJ;;chr6:19837592..19837621,+!p1@ID4!1.13!75.65!ID4;;chr3:147127177..147127194,+!p2@ZIC1!1.13!12.61!ZIC1;;chr19:13135582..13135600,+!p3@NFIX!1.13!12.61!NFIX;;chr1:61548069..61548102,+!p3@NFIA!1.11!28.82!NFIA;;chr19:57352109..57352153,-!p2@ZIM2!1.11!12.01!ZIM2;;chr7:96654133..96654150,-!p1@DLX5!1.11!12.01!DLX5;;chr15:80696666..80696700,+!p4@ARNT2!1.09!11.41!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr12:103352277..103352324,+!p2@ASCL1!1.09!11.41!ASCL1;;chr12:54779511..54779577,-!p5@ZNF385A!1.09!11.41!ZNF385A;;chr17:38219209..38219230,+!p1@THRA!1.08!142.90!THRA;;chr2:214016314..214016343,-!p2@IKZF2!1.07!18.01!IKZF2;;chr11:113930401..113930422,+!p3@ZBTB16!1.07!10.81!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.07!10.81!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.07!10.81!LHX2;;chr20:3388541..3388575,-!p2@C20orf194!1.06!41.43!C20orf194;;chr8:80679993..80680011,-!p1@HEY1!1.05!15.01!HEY1;;chr11:8102846..8102892,+!p1@TUB!1.05!14.41!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.21!SPI1;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.21!DACH1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.21!HEYL;;chrX:85969626..85969664,+!p1@DACH2!1.05!10.21!DACH2;;chr16:67198633..67198671,+!p1@HSF4!1.05!10.21!HSF4;;chr9:14314131..14314147,-!p2@NFIB!1.04!55.84!NFIB;;chr15:57511609..57511651,+!p2@TCF12!1.04!16.81!TCF12;;chr17:7492684..7492778,-!p2@SOX15!1.03!21.01!SOX15;;chr1:61548118..61548129,+!p9@NFIA!1.03!10.81!NFIA;;chr15:80696824..80696835,+!p9@ARNT2!1.03!9.61!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.03!9.61!PAX6;;chr2:145275982..145276003,-!p7@ZEB2!1.03!9.61!ZEB2;;chr2:45168959..45168990,+!p6@SIX3!1.03!9.61!SIX3;;chr2:95963120..95963136,+!p2@KCNIP3!1.03!9.61!KCNIP3;;chr4:26344778..26344807,+!p8@RBPJ!1.03!9.61!RBPJ;;chr7:28448965..28448994,+!p2@CREB5!1.02!34.22!CREB5;;chr7:86781858..86781879,+!p3@DMTF1!1.02!15.61!DMTF1;;chr5:124084493..124084524,-!p2@ZNF608!1.01!21.01!ZNF608;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.81!HEY2;;chr2:145277640..145277771,-!p1@ZEB2!1.00!123.69!ZEB2;;chr3:126076264..126076305,-!p2@KLF15!1.00!12.61!KLF15;;chr3:141105235..141105307,+!p7@ZBTB38!1.00!9.01!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.01!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.00!9.01!IRF8;;chr18:6414849..6414876,-!p2@L3MBTL4!1.00!9.01!L3MBTL4;;chr21:39870339..39870443,-!p1@ERG!1.00!9.01!ERG;;chr10:48359344..48359376,+!p2@ZNF488!1.00!9.01!ZNF488;;chr10:64133910..64133925,+!p5@ZNF365!1.00!9.01!ZNF365;;chr12:26277929..26277955,-!p3@BHLHE41!0.99!12.61!BHLHE41;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.81!ZBTB38;;chr19:9879350..9879419,-!p2@ZNF846!0.98!18.61!ZNF846;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.21!ZNF540;;chr14:73360799..73360817,-!p1@DPF3!0.97!29.42!DPF3;;chr19:38183208..38183225,-!p1@ZNF781!0.97!10.81!ZNF781;;chr20:21494654..21494678,-!p2@NKX2-2!0.97!8.41!NKX2-2;;chr10:64133862..64133884,+!p4@ZNF365!0.97!8.41!ZNF365;;chr15:80733570..80733659,+!p2@ARNT2!0.97!8.41!ARNT2;;chr3:147111231..147111281,+!p3@ZIC1!0.97!8.41!ZIC1;;chr7:50344289..50344323,+!p1@IKZF1!0.97!8.41!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.02!ZMAT1;;chr13:45010939..45011033,-!p1@TSC22D1!0.95!541.58!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.42!ZBTB20;;chr10:35484053..35484076,+!p1@CREM!0.95!20.41!CREM;;chr1:61548225..61548299,+!p1@NFIA!0.94!103.87!NFIA;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.83!SREBF1;;chr15:57210961..57211012,+!p3@TCF12!0.94!25.82!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!12.01!ZNF385A;;chr18:55102628..55102646,+!p2@ONECUT2!0.94!7.81!ONECUT2;;chr9:14314946..14314983,-!p8@NFIB!0.94!7.81!NFIB;;chr7:96634878..96634900,+!p2@DLX6!0.94!7.81!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.94!7.81!DLX6;;chr19:58545454..58545498,+!p1@ZSCAN1!0.94!7.81!ZSCAN1;;chr3:147127142..147127168,+!p1@ZIC1!0.94!7.81!ZIC1;;chr19:33793430..33793447,-!p1@CEBPA!0.93!33.02!CEBPA;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr17:47439437..47439533,-!p1@ZNF652!0.91!60.04!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!0.91!15.01!ZNF708;;chr15:31658288..31658338,+!p4@KLF13!0.91!7.21!KLF13;;chr2:180726254..180726275,-!p4@ZNF385B!0.91!7.21!ZNF385B;;chr2:180726331..180726344,-!p5@ZNF385B!0.91!7.21!ZNF385B;;chr11:31832687..31832704,-!p6@PAX6!0.91!7.21!PAX6;;chr11:31839488..31839515,-!p3@PAX6!0.91!7.21!PAX6;;chr19:38183228..38183242,-!p4@ZNF781!0.91!7.21!ZNF781;;chr8:10588010..10588030,-!p1@SOX7!0.91!7.21!SOX7;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.65!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!0.90!20.41!ZNF415;;chr19:49139477..49139552,-!p4@DBP!0.90!9.01!DBP;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.01!NFATC2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.89!49.23!ZNF410;;chr8:77593474..77593612,+!p1@ZFHX4!0.89!30.02!ZFHX4;;chr19:20748574..20748599,-!p1@ZNF737!0.88!42.03!ZNF737;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.41!DPF1;;chr19:57324701..57324716,-!p2@PEG3!0.88!6.60!PEG3;;chr1:165414325..165414369,-!p1@RXRG!0.88!6.60!RXRG;;chr22:41763274..41763318,+!p3@TEF!0.88!6.60!TEF;;chr2:45168875..45168916,+!p1@SIX3!0.88!6.60!SIX3;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.60!POU3F4;;chr16:51185318..51185348,-!p2@SALL1!0.88!6.60!SALL1;;chr9:1050331..1050363,+!p1@DMRT2!0.88!6.60!DMRT2;;chr8:106330656..106330684,+!p1@ZFPM2!0.87!17.41!ZFPM2;;chrX:70315688..70315709,+!p1@FOXO4!0.87!15.61!FOXO4;;chr17:38219184..38219195,+!p3@THRA!0.87!13.21!THRA;;chr14:21994337..21994442,-!p1@SALL2!0.86!18.01!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr15:61521417..61521460,-!p2@RORA!0.86!14.41!RORA;;chr1:151032142..151032195,+!p5@MLLT11!0.86!12.61!MLLT11;;chr1:61548374..61548415,+!p4@NFIA!0.86!12.01!NFIA;;chr7:64023410..64023428,-!p2@ZNF680!0.86!10.21!ZNF680;;chr6:126112074..126112144,+!p1@NCOA7!0.85!87.66!NCOA7;;chr10:38265517..38265591,-!p1@ZNF25!0.85!24.62!ZNF25;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.41!ZNF711;;chr22:41763452..41763466,+!p2@TEF!0.85!6.00!TEF;;chr2:145275947..145275981,-!p10@ZEB2!0.85!6.00!ZEB2;;chr2:16080659..16080685,+!p1@MYCN!0.85!6.00!MYCN;;chr2:180726291..180726311,-!p1@ZNF385B!0.85!6.00!ZNF385B;;chr2:60781148..60781159,-!p8@BCL11A!0.85!6.00!BCL11A;;chr15:80696410..80696477,+!p6@ARNT2!0.85!6.00!ARNT2;;chr10:118897775..118897786,-!p2@VAX1!0.85!6.00!VAX1;;chr11:85393886..85393913,-!p3@CREBZF!0.85!6.00!CREBZF;;chr12:56415246..56415286,+!p2@IKZF4!0.85!6.0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10175-103C4
 |is_a=EFO:0002091;;FF:0010161
 |is_obsolete=
+|library_id=CNhs13801
+|library_id_phase_based=2:CNhs13801
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10175
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10175
 |name=globus pallidus - adult, donor10196
 |namespace=FANTOM5
@@ Line 47: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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@@ Line 62: / Line 78: @@
 |rna_weight_ug=75.8385
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 83: / Line 100: @@
 |top_motifs=SOX5:3.80687030592;SOX2:3.13817007678;DBP:3.02783386802;MTF1:2.98002642157;NFIX:2.90636218021;NHLH1,2:2.82641536774;ATF2:2.82399005716;OCT4_SOX2{dimer}:2.76678040554;MYFfamily:2.66266272077;MED-1{core}:2.65451961185;REST:2.63590208942;ZFP161:2.54322671622;SOX{8,9,10}:2.50037740424;NKX3-2:2.49538535615;SOX17:2.29107135559;XBP1:2.27686750756;CUX2:2.17919660119;ZBTB6:2.15676255223;EGR1..3:2.15068771226;PRRX1,2:2.08085540914;HOXA9_MEIS1:2.06163155268;MTE{core}:2.03224735918;HIC1:2.02508647331;FOXP3:1.93291512844;AHR_ARNT_ARNT2:1.91512161847;RREB1:1.8440868518;NKX6-1,2:1.79783518821;TGIF1:1.77583832472;SMAD1..7,9:1.76456290287;RBPJ:1.72878689781;RFX2..5_RFXANK_RFXAP:1.72804660146;JUN:1.72479265658;TFAP2B:1.72258691867;AR:1.71190881651;PRDM1:1.70933103892;GTF2I:1.69690678747;ONECUT1,2:1.6952106945;RFX1:1.68426902589;ADNP_IRX_SIX_ZHX:1.65666282911;LMO2:1.64300308231;FOXM1:1.63136827608;NANOG:1.60467210516;STAT2,4,6:1.52651616665;MAFB:1.4997635001;GATA4:1.43782668074;MZF1:1.43329045789;ALX1:1.41786759112;PAX5:1.41055167147;PAX6:1.38973945055;FOX{F1,F2,J1}:1.32830478501;BREu{core}:1.27762737355;HOX{A6,A7,B6,B7}:1.27289153171;PATZ1:1.26865316471;POU6F1:1.25861120544;ARID5B:1.22600635927;LEF1_TCF7_TCF7L1,2:1.20735446746;VSX1,2:1.18115896105;STAT1,3:1.17996032227;FOXD3:1.13496133686;CDC5L:1.12271897031;MAZ:1.10098614832;MYBL2:1.09391495619;POU5F1:1.08784000189;NRF1:1.08783013264;NKX2-3_NKX2-5:1.08225094877;SP1:1.02722482153;HOX{A4,D4}:1.00437195496;KLF4:0.99870101757;TFAP2{A,C}:0.989219903196;GFI1B:0.970221118383;ZNF423:0.969465313964;HBP1_HMGB_SSRP1_UBTF:0.935107595574;HMGA1,2:0.911043480133;SREBF1,2:0.890617014378;LHX3,4:0.870844245034;ESRRA:0.854394007098;TLX2:0.851828984186;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.81588506315;NR3C1:0.812946297136;ZBTB16:0.812506144162;EP300:0.765674255562;TFDP1:0.755565561065;ZNF384:0.755362896917;FOXP1:0.711734900415;SPZ1:0.699629227083;POU3F1..4:0.678925524523;HMX1:0.662640734587;RORA:0.647469361701;FOX{D1,D2}:0.629986060656;GZF1:0.562156005641;TLX1..3_NFIC{dimer}:0.548908905236;EBF1:0.547703071776;CRX:0.533576912982;IRF7:0.521634441981;CDX1,2,4:0.513275657093;CREB1:0.503954912209;PBX1:0.502477296595;ZNF143:0.475195913193;BPTF:0.433710354444;NFIL3:0.403868622004;IKZF2:0.398947083907;GTF2A1,2:0.378682896602;HAND1,2:0.37377900843;FOXN1:0.347572676392;MEF2{A,B,C,D}:0.323291892259;GFI1:0.315119536218;FOX{I1,J2}:0.281953541259;ATF5_CREB3:0.274172879165;ZEB1:0.27323904981;PAX2:0.224190143526;PDX1:0.201050530109;FOXQ1:0.195356174299;T:0.190905623229;PAX1,9:0.1691065042;ZNF238:0.052609567513;MYOD1:0.0503710938191;NFE2L1:0.0455884124814;PAX4:-0.0389515973306;ATF4:-0.0519871205337;CEBPA,B_DDIT3:-0.0520333114621;GCM1,2:-0.0606957082768;IRF1,2:-0.0729283552109;NR5A1,2:-0.0733236477256;ZIC1..3:-0.0817767985369;NFY{A,B,C}:-0.0857911868606;YY1:-0.15262764387;TFAP4:-0.245464790813;FOXL1:-0.283026089173;bHLH_family:-0.289081090244;DMAP1_NCOR{1,2}_SMARC:-0.297947185985;NANOG{mouse}:-0.380325025819;FOXO1,3,4:-0.385333107504;TEF:-0.445053831301;TOPORS:-0.45379964062;NFE2:-0.453832119711;TBP:-0.459691486038;ATF6:-0.498497965042;GATA6:-0.5082762035;TFCP2:-0.511140355298;NKX2-1,4:-0.519289594837;NFE2L2:-0.527031554205;ETS1,2:-0.52982005059;HNF4A_NR2F1,2:-0.531552411146;EVI1:-0.533200657872;PITX1..3:-0.536173317897;NKX3-1:-0.541327262789;FOXA2:-0.551263490709;POU1F1:-0.572615105404;HSF1,2:-0.577671062106;SPI1:-0.588715255217;NFATC1..3:-0.594589480662;UFEwm:-0.600808949721;SPIB:-0.617257170814;TBX4,5:-0.620694142873;HIF1A:-0.657937243987;SNAI1..3:-0.678971713539;HNF1A:-0.690695712215;TP53:-0.714527853206;FOS_FOS{B,L1}_JUN{B,D}:-0.779440132672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.812886790901;IKZF1:-0.819553257523;XCPE1{core}:-0.843881714332;PAX8:-0.849788395159;RXR{A,B,G}:-0.89548432134;FOSL2:-0.897554956052;HLF:-0.905892135672;BACH2:-0.906981697378;TAL1_TCF{3,4,12}:-0.913175130513;PAX3,7:-0.950377248854;HES1:-0.999688529926;SRF:-1.06007833211;NFKB1_REL_RELA:-1.10459072023;ELK1,4_GABP{A,B1}:-1.10933359302;AIRE:-1.11484955283;POU2F1..3:-1.12246119014;TEAD1:-1.12429041399;E2F1..5:-1.13970412542;RUNX1..3:-1.17959843392;STAT5{A,B}:-1.19266435633;ELF1,2,4:-1.20598777366;ESR1:-1.26538625202;GLI1..3:-1.48876422164;ZNF148:-1.53250985789;RXRA_VDR{dimer}:-1.59453711162;NR6A1:-1.60590149153;ALX4:-1.61947738292;MYB:-1.64755532961;NR1H4:-1.77104666439;NKX2-2,8:-1.84667667012;HOX{A5,B5}:-2.67311484767;EN1,2:-2.67349751096;PPARG:-3.35740487737
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10175-103C4;search_select_hide=table117:FF:10175-103C4
 }}

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FF:10175-103C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0