FF:10191-103E2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005306 | |||
|accession_numbers=CAGE;DRX008759;DRR009631;DRZ001056;DRZ002441;DRZ012406;DRZ013791 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.07!117.34!TCF7;;chr16:85932760..85932775,+!p1@IRF8!2.03!107.08!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.01!101.04!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!1.98!95.40!POU2AF1;;chr20:62680984..62680999,-!p1@SOX18!1.97!119.36!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.74!53.34!SPI1;;chr6:391743..391759,+!p1@IRF4!1.65!43.68!IRF4;;chr2:100759010..100759035,-!p1@AFF3!1.65!43.27!AFF3;;chr12:52437488..52437507,+!p2@NR4A1!1.57!36.43!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.56!35.02!HEYL;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.86!SATB1;;chr4:109087445..109087463,-!p1@LEF1!1.53!33.21!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.52!32.20!PLEK;;chr21:39870339..39870443,-!p1@ERG!1.52!32.20!ERG;;chr1:214161272..214161322,+!p1@PROX1!1.49!41.66!PROX1;;chr2:231090433..231090469,+!p1@SP140!1.48!28.98!SP140;;chr20:50159198..50159299,-!p1@NFATC2!1.47!41.06!NFATC2;;chr17:38020392..38020477,-!p1@IKZF3!1.44!26.77!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.43!26.17!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.43!25.96!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.42!35.83!ZBTB16;;chr2:100759037..100759058,-!p2@AFF3!1.41!24.56!AFF3;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.41!AKNA;;chrY:21906594..21906622,-!p1@KDM5D!1.40!24.35!KDM5D;;chr5:133450365..133450444,+!p1@TCF7!1.39!104.86!TCF7;;chr19:33793430..33793447,-!p1@CEBPA!1.39!97.22!CEBPA;;chr4:109090075..109090095,-!p2@LEF1!1.39!23.55!LEF1;;chr8:55370487..55370503,+!p1@SOX17!1.39!23.35!SOX17;;chr20:21686317..21686350,+!p1@PAX1!1.37!22.34!PAX1;;chr2:19558373..19558392,-!p1@OSR1!1.31!52.33!OSR1;;chr6:91006518..91006570,-!p1@BACH2!1.31!43.88!BACH2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.52!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!1.30!19.12!MEOX2;;chr2:231090471..231090504,+!p2@SP140!1.29!18.32!SP140;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.33!PRRX1;;chr3:12330560..12330579,+!p1@PPARG!1.25!19.32!PPARG;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.71!SOX7;;chr16:79634624..79634642,-!p1@MAF!1.24!64.21!MAF;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.79!RUNX3;;chr3:63953435..63953499,+!p1@ATXN7!1.24!16.30!ATXN7;;chr12:52445218..52445237,+!p1@NR4A1!1.23!196.04!NR4A1;;chr8:60031619..60031676,-!p1@TOX!1.23!34.02!TOX;;chr8:25902876..25902936,-!p1@EBF2!1.22!15.50!EBF2;;chr5:88178983..88179012,-!p1@MEF2C!1.21!115.53!MEF2C;;chr5:133451347..133451358,+!p3@TCF7!1.20!14.69!TCF7;;chr3:71355163..71355209,-!p5@FOXP1!1.19!20.33!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.18!14.09!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.09!IKZF1;;chr17:41739283..41739297,-!p1@MEOX1!1.17!13.69!MEOX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.15!17.31!TSHZ2;;chr10:8096631..8096660,+!p1@GATA3!1.15!15.70!GATA3;;chr17:6926362..6926377,+!p1@BCL6B!1.15!13.08!BCL6B;;chr16:79634595..79634620,-!p2@MAF!1.14!23.55!MAF;;chr7:73038839..73038862,-!p1@MLXIPL!1.14!12.88!MLXIPL;;chr9:37034186..37034216,-!p2@PAX5!1.14!12.88!PAX5;;chr1:151798546..151798590,-!p2@RORC!1.13!12.48!RORC;;chr17:37934365..37934387,-!p2@IKZF3!1.12!12.28!IKZF3;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!315.40!TSC22D3;;chr5:158526917..158526932,-!p1@EBF1!1.11!29.79!EBF1;;chr12:54778471..54778528,-!p1@ZNF385A!1.11!11.88!ZNF385A;;chr7:44143925..44143970,+!p1@AEBP1!1.10!259.44!AEBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.67!ZNF366;;chr17:37934204..37934241,-!p3@IKZF3!1.10!11.67!IKZF3;;chr2:100758991..100759009,-!p3@AFF3!1.09!11.27!AFF3;;chr2:145277882..145277967,-!p3@ZEB2!1.08!19.12!ZEB2;;chr1:165394215..165394226,-!p8@RXRG!1.08!11.07!RXRG;;chr19:42636586..42636607,-!p1@POU2F2!1.07!29.99!POU2F2;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.35!NR1H3;;chr14:75988771..75988826,+!p1@BATF!1.07!14.49!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.06!340.96!KLF2;;chr16:68119324..68119364,+!p1@NFATC3!1.06!47.30!NFATC3;;chr19:13213662..13213686,-!p1@LYL1!1.06!15.70!LYL1;;chr17:38020557..38020572,-!p4@IKZF3!1.05!10.26!IKZF3;;chr2:60781201..60781258,-!p3@BCL11A!1.05!10.26!BCL11A;;chr22:38380543..38380569,-!p1@SOX10!1.04!10.06!SOX10;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!10.06!ZBTB16;;chrX:49121165..49121179,-!p1@FOXP3!1.04!10.06!FOXP3;;chrY:21906761..21906810,-!p2@KDM5D!1.04!9.86!KDM5D;;chr18:77155922..77155939,+!p1@NFATC1!1.03!26.77!NFATC1;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.49!PRRX1;;chr20:56195474..56195506,-!p1@ZBP1!1.03!9.66!ZBP1;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.66!PAX9;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.46!SATB1;;chr3:27763807..27763822,-!p1@EOMES!1.02!9.46!EOMES;;chr9:124991204..124991246,-!p1@LHX6!1.02!9.46!LHX6;;chr15:42749722..42749739,-!p2@ZFP106!1.01!16.71!ZFP106;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.67!KLF15;;chr6:135502408..135502459,+!p2@MYB!1.01!10.87!MYB;;chr20:39317868..39317884,-!p1@MAFB!1.00!109.69!MAFB;;chr11:47400062..47400077,-!p2@SPI1!1.00!9.06!SPI1;;chr7:50348268..50348366,+!p4@IKZF1!0.99!8.86!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.26!GATA3;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.86!PRRX1;;chr17:53342311..53342400,+!p1@HLF!0.98!9.86!HLF;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.19!RUNX1;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.49!ZBTB16;;chr2:192015701..192015743,-!p1@STAT4!0.96!11.27!STAT4;;chr9:1050331..1050363,+!p1@DMRT2!0.96!8.05!DMRT2;;chr15:96873984..96873999,+!p3@NR2F2!0.95!60.18!NR2F2;;chr2:60778035..60778060,-!p4@BCL11A!0.95!9.66!BCL11A;;chr9:77112244..77112262,+!p1@RORB!0.95!8.86!RORB;;chr3:18487057..18487105,-!p4@SATB1!0.95!7.85!SATB1;;chr7:44143978..44143989,+!p2@AEBP1!0.94!14.29!AEBP1;;chr3:111314186..111314204,-!p1@ZBED2!0.94!7.65!ZBED2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.94!7.65!PEG3;;chr20:21686290..21686311,+!p2@PAX1!0.93!7.45!PAX1;;chr7:27170359..27170381,-!p1@HOXA4!0.93!7.45!HOXA4;;chr18:53089538..53089578,-!p14@TCF4!0.93!7.45!TCF4;;chr11:128457446..128457461,-!p4@ETS1!0.93!7.45!ETS1;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.55!GATA6;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.13!ELK3;;chr4:109089901..109089930,-!p3@LEF1!0.92!7.25!LEF1;;chr17:45810594..45810608,+!p1@TBX21!0.92!7.25!TBX21;;chr13:41240717..41240735,-!p2@FOXO1!0.91!50.72!FOXO1;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.31!TCF4;;chr16:79633894..79633954,-!p3@MAF!0.91!14.29!MAF;;chr6:91006575..91006602,-!p2@BACH2!0.91!10.87!BACH2;;chr5:88120151..88120177,-!p6@MEF2C!0.91!7.04!MEF2C;;chr16:79634581..79634592,-!p4@MAF!0.91!7.04!MAF;;chr17:38020516..38020544,-!p5@IKZF3!0.91!7.04!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!0.90!46.49!ELF1;;chr19:13213704..13213726,-!p3@LYL1!0.90!9.46!LYL1;;chr6:135502501..135502546,+!p1@MYB!0.90!8.45!MYB;;chr1:61548374..61548415,+!p4@NFIA!0.89!12.88!NFIA;;chr1:61548225..61548299,+!p1@NFIA!0.88!90.17!NFIA;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.64!ZFY;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.64!EBF3;;chr12:26277956..26277980,-!p1@BHLHE41!0.87!24.35!BHLHE41;;chr3:32023232..32023273,+!p1@ZNF860!0.87!9.26!ZNF860;;chr22:41763452..41763466,+!p2@TEF!0.87!6.44!TEF;;chr12:101869096..101869118,+!p1@SPIC!0.87!6.44!SPIC;;chr11:128392273..128392308,-!p2@ETS1!0.86!28.18!ETS1;;chr17:1959369..1959388,+!p2@HIC1!0.86!17.11!HIC1;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr20:30433396..30433414,-!p1@FOXS1!0.86!6.24!FOXS1;;chr4:174451370..174451387,-!p1@HAND2!0.86!6.24!HAND2;;chr13:41240737..41240787,-!p1@FOXO1!0.84!75.88!FOXO1;;chr17:40440481..40440550,+!p1@STAT5A!0.84!45.49!STAT5A;;chr19:19779619..19779670,+!p1@ZNF101!0.84!17.71!ZNF101;;chr9:102584159..102584174,+!p2@NR4A3!0.84!11.07!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!0.84!7.85!NFATC2;;chr18:53068911..53068935,-!p4@TCF4!0.84!6.84!TCF4;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.92!BCL11A;;chr7:100065686..100065701,-!p2@TSC22D4!0.83!5.84!TSC22D4;;chr5:88179017..88179046,-!p2@MEF2C!0.82!23.95!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.95!TSC22D3;;chr14:61116183..61116208,-!p1@SIX1!0.82!22.74!SIX1;;chrX:106960221..106960236,-!p3@TSC22D3!0.82!16.30!TSC22D3;;chr3:12329397..12329433,+!p2@PPARG!0.82!13.28!PPARG;;chr2:231090344..231090361,-!p3@SP110!0.82!5.64!SP110;;chr3:128212033..128212051,-!p1@GATA2!0.82!5.64!GATA2;;chr4:109086281..109086319,-!p9@LEF1!0.82!5.64!LEF1;;chr11:128457492..128457506,-!p6@ETS1!0.82!5.64!ETS1;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.64!PRRX1;;chr11:128563948..128564003,+!p1@FLI1!0.81!71.85!FLI1;;chr8:22550982..22550999,-!p1@EGR3!0.81!16.50!EGR3;;chr8:106330656..106330684,+!p1@ZFPM2!0.81!15.10!ZFPM2;;chr5:88179195..88179224,-!p3@MEF2C!0.81!9.06!MEF2C;;chr5:133477905..133477956,+!p5@TCF7!0.81!5.43!TCF7;;chr4:109090054..109090073,-!p7@LEF1!0.81!5.43!LEF1;;chr16:79634464..79634493,-!p5@MAF!0.81!5.43!MAF;;chr17:37934280..37934299,-!p6@IKZF3!0.81!5.43!IKZF3;;chrX:101186981..101187030,-!p1@ZMAT1!0.80!18.32!ZMAT1;;chr11:128392309..128392350,-!p3@ETS1!0.80!13.28!ETS1;;chr2:192015750..192015793,-!p2@STAT4!0.80!7.25!STAT4;;chr22:19748231..19748317,+!p1@TBX1!0.79!5.23!TBX1;;chr3:12329358..12329393,+!p3@PPARG!0.78!13.08!PPARG;;chr4:185395590..185395627,-!p3@IRF2!0.78!6.44!IRF2;;chr6:106546808..106546833,+!p3@PRDM1!0.78!6.44!PRDM1;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.03!ZNF727;;chr4:109088089..109088101,-!p11@LEF1!0.78!5.03!LEF1;;chr17:41738684..41738704,-!p2@MEOX1!0.78!5.03!MEOX1;;chr2:214015111..214015179,-!p1@IKZF2!0.77!9.26!IKZF2;;chr12:125003087..125003141,-!p4@NCOR2!0.77!6.44!NCOR2;;chr5:92919100..92919135,+!p3@NR2F1!0.77!6.04!NR2F1;;chr6:134210243..134210257,+!p1@TCF21!0.77!4.83!TCF21;;chr12:103351444..103351461,+!p1@ASCL1!0.77!4.83!ASCL1;;chr4:109089996..109090012,-!p5@LEF1!0.77!4.83!LEF1;;chr17:56565257..56565283,-!p2@HSF5!0.77!4.83!HSF5;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.77!4.83!MEF2B;;chr2:61108695..61108753,+!p1@REL!0.76!36.23!REL;;chr4:185395633..185395651,-!p2@IRF2!0.76!8.05!IRF2;;chr2:145282041..145282092,-!p8@ZEB2!0.76!7.45!ZEB2;;chr18:77160282..77160343,+!p2@NFATC1!0.75!31.80!NFATC1;;chr3:114866084..114866118,-!p2@ZBTB20!0.75!18.32!ZBTB20;;chr1:23857698..23857733,-!p1@E2F2!0.75!9.06!E2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.75!8.05!FOXC1;;chr3:12607626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| |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.07!117.34!TCF7;;chr16:85932760..85932775,+!p1@IRF8!2.03!107.08!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.01!101.04!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!1.98!95.40!POU2AF1;;chr20:62680984..62680999,-!p1@SOX18!1.97!119.36!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.74!53.34!SPI1;;chr6:391743..391759,+!p1@IRF4!1.65!43.68!IRF4;;chr2:100759010..100759035,-!p1@AFF3!1.65!43.27!AFF3;;chr12:52437488..52437507,+!p2@NR4A1!1.57!36.43!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.56!35.02!HEYL;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.86!SATB1;;chr4:109087445..109087463,-!p1@LEF1!1.53!33.21!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.52!32.20!PLEK;;chr21:39870339..39870443,-!p1@ERG!1.52!32.20!ERG;;chr1:214161272..214161322,+!p1@PROX1!1.49!41.66!PROX1;;chr2:231090433..231090469,+!p1@SP140!1.48!28.98!SP140;;chr20:50159198..50159299,-!p1@NFATC2!1.47!41.06!NFATC2;;chr17:38020392..38020477,-!p1@IKZF3!1.44!26.77!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.43!26.17!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.43!25.96!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.42!35.83!ZBTB16;;chr2:100759037..100759058,-!p2@AFF3!1.41!24.56!AFF3;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.41!AKNA;;chrY:21906594..21906622,-!p1@KDM5D!1.40!24.35!KDM5D;;chr5:133450365..133450444,+!p1@TCF7!1.39!104.86!TCF7;;chr19:33793430..33793447,-!p1@CEBPA!1.39!97.22!CEBPA;;chr4:109090075..109090095,-!p2@LEF1!1.39!23.55!LEF1;;chr8:55370487..55370503,+!p1@SOX17!1.39!23.35!SOX17;;chr20:21686317..21686350,+!p1@PAX1!1.37!22.34!PAX1;;chr2:19558373..19558392,-!p1@OSR1!1.31!52.33!OSR1;;chr6:91006518..91006570,-!p1@BACH2!1.31!43.88!BACH2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.52!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!1.30!19.12!MEOX2;;chr2:231090471..231090504,+!p2@SP140!1.29!18.32!SP140;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.33!PRRX1;;chr3:12330560..12330579,+!p1@PPARG!1.25!19.32!PPARG;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.71!SOX7;;chr16:79634624..79634642,-!p1@MAF!1.24!64.21!MAF;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.79!RUNX3;;chr3:63953435..63953499,+!p1@ATXN7!1.24!16.30!ATXN7;;chr12:52445218..52445237,+!p1@NR4A1!1.23!196.04!NR4A1;;chr8:60031619..60031676,-!p1@TOX!1.23!34.02!TOX;;chr8:25902876..25902936,-!p1@EBF2!1.22!15.50!EBF2;;chr5:88178983..88179012,-!p1@MEF2C!1.21!115.53!MEF2C;;chr5:133451347..133451358,+!p3@TCF7!1.20!14.69!TCF7;;chr3:71355163..71355209,-!p5@FOXP1!1.19!20.33!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.18!14.09!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.09!IKZF1;;chr17:41739283..41739297,-!p1@MEOX1!1.17!13.69!MEOX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.15!17.31!TSHZ2;;chr10:8096631..8096660,+!p1@GATA3!1.15!15.70!GATA3;;chr17:6926362..6926377,+!p1@BCL6B!1.15!13.08!BCL6B;;chr16:79634595..79634620,-!p2@MAF!1.14!23.55!MAF;;chr7:73038839..73038862,-!p1@MLXIPL!1.14!12.88!MLXIPL;;chr9:37034186..37034216,-!p2@PAX5!1.14!12.88!PAX5;;chr1:151798546..151798590,-!p2@RORC!1.13!12.48!RORC;;chr17:37934365..37934387,-!p2@IKZF3!1.12!12.28!IKZF3;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!315.40!TSC22D3;;chr5:158526917..158526932,-!p1@EBF1!1.11!29.79!EBF1;;chr12:54778471..54778528,-!p1@ZNF385A!1.11!11.88!ZNF385A;;chr7:44143925..44143970,+!p1@AEBP1!1.10!259.44!AEBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.67!ZNF366;;chr17:37934204..37934241,-!p3@IKZF3!1.10!11.67!IKZF3;;chr2:100758991..100759009,-!p3@AFF3!1.09!11.27!AFF3;;chr2:145277882..145277967,-!p3@ZEB2!1.08!19.12!ZEB2;;chr1:165394215..165394226,-!p8@RXRG!1.08!11.07!RXRG;;chr19:42636586..42636607,-!p1@POU2F2!1.07!29.99!POU2F2;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.35!NR1H3;;chr14:75988771..75988826,+!p1@BATF!1.07!14.49!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.06!340.96!KLF2;;chr16:68119324..68119364,+!p1@NFATC3!1.06!47.30!NFATC3;;chr19:13213662..13213686,-!p1@LYL1!1.06!15.70!LYL1;;chr17:38020557..38020572,-!p4@IKZF3!1.05!10.26!IKZF3;;chr2:60781201..60781258,-!p3@BCL11A!1.05!10.26!BCL11A;;chr22:38380543..38380569,-!p1@SOX10!1.04!10.06!SOX10;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!10.06!ZBTB16;;chrX:49121165..49121179,-!p1@FOXP3!1.04!10.06!FOXP3;;chrY:21906761..21906810,-!p2@KDM5D!1.04!9.86!KDM5D;;chr18:77155922..77155939,+!p1@NFATC1!1.03!26.77!NFATC1;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.49!PRRX1;;chr20:56195474..56195506,-!p1@ZBP1!1.03!9.66!ZBP1;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.66!PAX9;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.46!SATB1;;chr3:27763807..27763822,-!p1@EOMES!1.02!9.46!EOMES;;chr9:124991204..124991246,-!p1@LHX6!1.02!9.46!LHX6;;chr15:42749722..42749739,-!p2@ZFP106!1.01!16.71!ZFP106;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.67!KLF15;;chr6:135502408..135502459,+!p2@MYB!1.01!10.87!MYB;;chr20:39317868..39317884,-!p1@MAFB!1.00!109.69!MAFB;;chr11:47400062..47400077,-!p2@SPI1!1.00!9.06!SPI1;;chr7:50348268..50348366,+!p4@IKZF1!0.99!8.86!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.26!GATA3;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.86!PRRX1;;chr17:53342311..53342400,+!p1@HLF!0.98!9.86!HLF;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.19!RUNX1;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.49!ZBTB16;;chr2:192015701..192015743,-!p1@STAT4!0.96!11.27!STAT4;;chr9:1050331..1050363,+!p1@DMRT2!0.96!8.05!DMRT2;;chr15:96873984..96873999,+!p3@NR2F2!0.95!60.18!NR2F2;;chr2:60778035..60778060,-!p4@BCL11A!0.95!9.66!BCL11A;;chr9:77112244..77112262,+!p1@RORB!0.95!8.86!RORB;;chr3:18487057..18487105,-!p4@SATB1!0.95!7.85!SATB1;;chr7:44143978..44143989,+!p2@AEBP1!0.94!14.29!AEBP1;;chr3:111314186..111314204,-!p1@ZBED2!0.94!7.65!ZBED2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.94!7.65!PEG3;;chr20:21686290..21686311,+!p2@PAX1!0.93!7.45!PAX1;;chr7:27170359..27170381,-!p1@HOXA4!0.93!7.45!HOXA4;;chr18:53089538..53089578,-!p14@TCF4!0.93!7.45!TCF4;;chr11:128457446..128457461,-!p4@ETS1!0.93!7.45!ETS1;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.55!GATA6;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.13!ELK3;;chr4:109089901..109089930,-!p3@LEF1!0.92!7.25!LEF1;;chr17:45810594..45810608,+!p1@TBX21!0.92!7.25!TBX21;;chr13:41240717..41240735,-!p2@FOXO1!0.91!50.72!FOXO1;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.31!TCF4;;chr16:79633894..79633954,-!p3@MAF!0.91!14.29!MAF;;chr6:91006575..91006602,-!p2@BACH2!0.91!10.87!BACH2;;chr5:88120151..88120177,-!p6@MEF2C!0.91!7.04!MEF2C;;chr16:79634581..79634592,-!p4@MAF!0.91!7.04!MAF;;chr17:38020516..38020544,-!p5@IKZF3!0.91!7.04!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!0.90!46.49!ELF1;;chr19:13213704..13213726,-!p3@LYL1!0.90!9.46!LYL1;;chr6:135502501..135502546,+!p1@MYB!0.90!8.45!MYB;;chr1:61548374..61548415,+!p4@NFIA!0.89!12.88!NFIA;;chr1:61548225..61548299,+!p1@NFIA!0.88!90.17!NFIA;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.64!ZFY;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.64!EBF3;;chr12:26277956..26277980,-!p1@BHLHE41!0.87!24.35!BHLHE41;;chr3:32023232..32023273,+!p1@ZNF860!0.87!9.26!ZNF860;;chr22:41763452..41763466,+!p2@TEF!0.87!6.44!TEF;;chr12:101869096..101869118,+!p1@SPIC!0.87!6.44!SPIC;;chr11:128392273..128392308,-!p2@ETS1!0.86!28.18!ETS1;;chr17:1959369..1959388,+!p2@HIC1!0.86!17.11!HIC1;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr20:30433396..30433414,-!p1@FOXS1!0.86!6.24!FOXS1;;chr4:174451370..174451387,-!p1@HAND2!0.86!6.24!HAND2;;chr13:41240737..41240787,-!p1@FOXO1!0.84!75.88!FOXO1;;chr17:40440481..40440550,+!p1@STAT5A!0.84!45.49!STAT5A;;chr19:19779619..19779670,+!p1@ZNF101!0.84!17.71!ZNF101;;chr9:102584159..102584174,+!p2@NR4A3!0.84!11.07!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!0.84!7.85!NFATC2;;chr18:53068911..53068935,-!p4@TCF4!0.84!6.84!TCF4;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.92!BCL11A;;chr7:100065686..100065701,-!p2@TSC22D4!0.83!5.84!TSC22D4;;chr5:88179017..88179046,-!p2@MEF2C!0.82!23.95!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.95!TSC22D3;;chr14:61116183..61116208,-!p1@SIX1!0.82!22.74!SIX1;;chrX:106960221..106960236,-!p3@TSC22D3!0.82!16.30!TSC22D3;;chr3:12329397..12329433,+!p2@PPARG!0.82!13.28!PPARG;;chr2:231090344..231090361,-!p3@SP110!0.82!5.64!SP110;;chr3:128212033..128212051,-!p1@GATA2!0.82!5.64!GATA2;;chr4:109086281..109086319,-!p9@LEF1!0.82!5.64!LEF1;;chr11:128457492..128457506,-!p6@ETS1!0.82!5.64!ETS1;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.64!PRRX1;;chr11:128563948..128564003,+!p1@FLI1!0.81!71.85!FLI1;;chr8:22550982..22550999,-!p1@EGR3!0.81!16.50!EGR3;;chr8:106330656..106330684,+!p1@ZFPM2!0.81!15.10!ZFPM2;;chr5:88179195..88179224,-!p3@MEF2C!0.81!9.06!MEF2C;;chr5:133477905..133477956,+!p5@TCF7!0.81!5.43!TCF7;;chr4:109090054..109090073,-!p7@LEF1!0.81!5.43!LEF1;;chr16:79634464..79634493,-!p5@MAF!0.81!5.43!MAF;;chr17:37934280..37934299,-!p6@IKZF3!0.81!5.43!IKZF3;;chrX:101186981..101187030,-!p1@ZMAT1!0.80!18.32!ZMAT1;;chr11:128392309..128392350,-!p3@ETS1!0.80!13.28!ETS1;;chr2:192015750..192015793,-!p2@STAT4!0.80!7.25!STAT4;;chr22:19748231..19748317,+!p1@TBX1!0.79!5.23!TBX1;;chr3:12329358..12329393,+!p3@PPARG!0.78!13.08!PPARG;;chr4:185395590..185395627,-!p3@IRF2!0.78!6.44!IRF2;;chr6:106546808..106546833,+!p3@PRDM1!0.78!6.44!PRDM1;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.03!ZNF727;;chr4:109088089..109088101,-!p11@LEF1!0.78!5.03!LEF1;;chr17:41738684..41738704,-!p2@MEOX1!0.78!5.03!MEOX1;;chr2:214015111..214015179,-!p1@IKZF2!0.77!9.26!IKZF2;;chr12:125003087..125003141,-!p4@NCOR2!0.77!6.44!NCOR2;;chr5:92919100..92919135,+!p3@NR2F1!0.77!6.04!NR2F1;;chr6:134210243..134210257,+!p1@TCF21!0.77!4.83!TCF21;;chr12:103351444..103351461,+!p1@ASCL1!0.77!4.83!ASCL1;;chr4:109089996..109090012,-!p5@LEF1!0.77!4.83!LEF1;;chr17:56565257..56565283,-!p2@HSF5!0.77!4.83!HSF5;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.77!4.83!MEF2B;;chr2:61108695..61108753,+!p1@REL!0.76!36.23!REL;;chr4:185395633..185395651,-!p2@IRF2!0.76!8.05!IRF2;;chr2:145282041..145282092,-!p8@ZEB2!0.76!7.45!ZEB2;;chr18:77160282..77160343,+!p2@NFATC1!0.75!31.80!NFATC1;;chr3:114866084..114866118,-!p2@ZBTB20!0.75!18.32!ZBTB20;;chr1:23857698..23857733,-!p1@E2F2!0.75!9.06!E2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.75!8.05!FOXC1;;chr3:12607626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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0006965,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0006965,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vein%252c%2520adult.CNhs12844.10191-103E2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vein%252c%2520adult.CNhs12844.10191-103E2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vein%252c%2520adult.CNhs12844.10191-103E2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/vein%252c%2520adult.CNhs12844.10191-103E2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/vein%252c%2520adult.CNhs12844.10191-103E2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10191-103E2 | |id=FF:10191-103E2 | ||
|is_a=EFO:0002091;;FF:0010191 | |is_a=EFO:0002091;;FF:0010191 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12844 | |||
|library_id_phase_based=2:CNhs12844 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10191 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10191 | |||
|name=vein, adult | |name=vein, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12844,LSID973,release012,COMPLETED | |profile_hcage=CNhs12844,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 60: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+04 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=24 | |sample_age=24 | ||
Line 85: | Line 101: | ||
|top_motifs=TLX2:2.50037374359;SPZ1:2.30161041062;TFAP4:2.29625150991;TFCP2:1.90133320591;SRF:1.86119491478;EP300:1.81506198534;GCM1,2:1.80213758911;TBP:1.78244785952;HMX1:1.78046533992;SMAD1..7,9:1.77071294858;SOX5:1.67294342012;MYFfamily:1.54359787171;NFATC1..3:1.54047275036;MEF2{A,B,C,D}:1.53176661981;ESR1:1.5123265393;TFAP2{A,C}:1.48057427318;AR:1.44434943396;ETS1,2:1.35203908353;POU5F1:1.30437365785;RREB1:1.29201041136;ZNF238:1.28387024322;POU2F1..3:1.27404553509;PAX6:1.26021095635;FOXO1,3,4:1.25660720192;PATZ1:1.25234663326;NR1H4:1.1914887033;MAZ:1.18822298794;PRDM1:1.12883937768;EBF1:1.11348860318;MTF1:1.06523391546;TGIF1:1.06195213518;ZNF148:1.02794731211;SPI1:1.02185910312;ZNF423:0.99804879922;MZF1:0.953798150693;IRF7:0.929156323598;IRF1,2:0.926960360559;HIC1:0.916328719603;PAX5:0.910957714138;LMO2:0.900366645317;SNAI1..3:0.878812018302;HES1:0.869466959287;EGR1..3:0.864104932381;IKZF2:0.86238158473;ELF1,2,4:0.853795834547;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.852639935842;SPIB:0.84585367907;SP1:0.83752138324;GATA4:0.829744171716;MED-1{core}:0.819025681333;MYBL2:0.809020787596;NHLH1,2:0.79704068082;BREu{core}:0.791719448974;MTE{core}:0.77590106613;RUNX1..3:0.757023783265;GLI1..3:0.752297664054;TLX1..3_NFIC{dimer}:0.729582524655;RXRA_VDR{dimer}:0.65332967466;MAFB:0.646450360649;NR5A1,2:0.642422943025;GTF2I:0.615207108194;FOX{D1,D2}:0.575234778555;XCPE1{core}:0.571421421176;MYOD1:0.52132005974;NR3C1:0.513347905502;STAT1,3:0.507331607894;TFAP2B:0.498994840762;GATA6:0.486901079383;XBP1:0.475315131543;TBX4,5:0.474870715598;T:0.473628459467;RBPJ:0.452692573097;ZEB1:0.436728441994;POU6F1:0.425845968064;HBP1_HMGB_SSRP1_UBTF:0.425188025818;BPTF:0.419620667783;STAT2,4,6:0.393860831467;ATF6:0.361182578164;ALX4:0.330582808594;HNF4A_NR2F1,2:0.327238007576;PAX3,7:0.312744488726;ZIC1..3:0.30107724872;ATF2:0.289847518113;HAND1,2:0.255699256738;RORA:0.227496836719;NANOG{mouse}:0.198340327048;GFI1B:0.19474595074;KLF4:0.189948855872;SREBF1,2:0.180802939822;GTF2A1,2:0.178180508195;NKX6-1,2:0.177328887644;ZNF384:0.135866441584;RXR{A,B,G}:0.125096293873;NFE2L1:0.117988567133;DMAP1_NCOR{1,2}_SMARC:0.115008485953;TEAD1:0.107393815312;NR6A1:0.0985343584752;FOXL1:0.0940157751501;NKX3-2:0.0879629697644;ZFP161:0.0872995819171;REST:0.0715338518104;NKX2-1,4:0.0668627410787;IKZF1:0.0642452261299;FOXP3:0.0642303310399;GZF1:0.0540789324732;JUN:0.0157291779115;SOX{8,9,10}:0.0142414730827;UFEwm:-0.00531240341523;ESRRA:-0.0276527097212;NFKB1_REL_RELA:-0.0475261658492;FOXN1:-0.0476540921354;PDX1:-0.0820683041112;ATF4:-0.134231865591;FOXA2:-0.140959610487;SOX2:-0.152705082024;FOX{F1,F2,J1}:-0.20288324786;PBX1:-0.217987218814;NANOG:-0.228650792297;NFIL3:-0.239202734369;NFY{A,B,C}:-0.258614908541;TP53:-0.338059831491;TOPORS:-0.33878988775;ZNF143:-0.355057990915;FOXP1:-0.36533049311;PITX1..3:-0.381609028295;E2F1..5:-0.394076108761;HNF1A:-0.395344962307;HSF1,2:-0.406052449362;HOX{A4,D4}:-0.412844848835;ZBTB6:-0.414169268442;TAL1_TCF{3,4,12}:-0.425677932586;RFX2..5_RFXANK_RFXAP:-0.434652866953;AIRE:-0.434871572072;PPARG:-0.484601310661;VSX1,2:-0.522908640904;DBP:-0.534143430856;LEF1_TCF7_TCF7L1,2:-0.555016960739;CUX2:-0.565162623726;CEBPA,B_DDIT3:-0.581484554201;ARID5B:-0.589107297309;ATF5_CREB3:-0.595907155376;GFI1:-0.599374159209;HOX{A6,A7,B6,B7}:-0.606177055834;NKX2-2,8:-0.612711991142;bHLH_family:-0.616667693751;SOX17:-0.659596444941;CREB1:-0.664192652447;FOX{I1,J2}:-0.675331985181;PAX2:-0.681885033588;NKX2-3_NKX2-5:-0.688207150729;YY1:-0.691150063581;ZBTB16:-0.697598141415;MYB:-0.701692913496;FOSL2:-0.706579188709;FOXD3:-0.714761253684;EN1,2:-0.755836440625;NRF1:-0.77378180592;CDX1,2,4:-0.785636371477;ADNP_IRX_SIX_ZHX:-0.831458028875;HLF:-0.832706601339;HOXA9_MEIS1:-0.843016589564;AHR_ARNT_ARNT2:-0.843901675863;CRX:-0.855839981303;PAX1,9:-0.857096081091;FOS_FOS{B,L1}_JUN{B,D}:-0.888447794032;NFE2:-0.912513714387;NFIX:-0.941773617481;POU3F1..4:-0.949371818142;LHX3,4:-0.958494511873;TFDP1:-0.983063774314;BACH2:-1.01179332142;CDC5L:-1.01217274958;OCT4_SOX2{dimer}:-1.01516396534;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.01714177026;PRRX1,2:-1.03422827135;NKX3-1:-1.12468976446;ELK1,4_GABP{A,B1}:-1.1404914729;RFX1:-1.14623244146;FOXM1:-1.15485587309;POU1F1:-1.2063775967;NFE2L2:-1.21863985762;HMGA1,2:-1.24754101171;PAX8:-1.29611247342;EVI1:-1.32129383993;ALX1:-1.3726480023;HIF1A:-1.47045293165;HOX{A5,B5}:-1.54578657493;FOXQ1:-1.56304704778;TEF:-1.57969340316;ONECUT1,2:-1.70199127161;PAX4:-1.77850677366;STAT5{A,B}:-1.7802596931 | |top_motifs=TLX2:2.50037374359;SPZ1:2.30161041062;TFAP4:2.29625150991;TFCP2:1.90133320591;SRF:1.86119491478;EP300:1.81506198534;GCM1,2:1.80213758911;TBP:1.78244785952;HMX1:1.78046533992;SMAD1..7,9:1.77071294858;SOX5:1.67294342012;MYFfamily:1.54359787171;NFATC1..3:1.54047275036;MEF2{A,B,C,D}:1.53176661981;ESR1:1.5123265393;TFAP2{A,C}:1.48057427318;AR:1.44434943396;ETS1,2:1.35203908353;POU5F1:1.30437365785;RREB1:1.29201041136;ZNF238:1.28387024322;POU2F1..3:1.27404553509;PAX6:1.26021095635;FOXO1,3,4:1.25660720192;PATZ1:1.25234663326;NR1H4:1.1914887033;MAZ:1.18822298794;PRDM1:1.12883937768;EBF1:1.11348860318;MTF1:1.06523391546;TGIF1:1.06195213518;ZNF148:1.02794731211;SPI1:1.02185910312;ZNF423:0.99804879922;MZF1:0.953798150693;IRF7:0.929156323598;IRF1,2:0.926960360559;HIC1:0.916328719603;PAX5:0.910957714138;LMO2:0.900366645317;SNAI1..3:0.878812018302;HES1:0.869466959287;EGR1..3:0.864104932381;IKZF2:0.86238158473;ELF1,2,4:0.853795834547;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.852639935842;SPIB:0.84585367907;SP1:0.83752138324;GATA4:0.829744171716;MED-1{core}:0.819025681333;MYBL2:0.809020787596;NHLH1,2:0.79704068082;BREu{core}:0.791719448974;MTE{core}:0.77590106613;RUNX1..3:0.757023783265;GLI1..3:0.752297664054;TLX1..3_NFIC{dimer}:0.729582524655;RXRA_VDR{dimer}:0.65332967466;MAFB:0.646450360649;NR5A1,2:0.642422943025;GTF2I:0.615207108194;FOX{D1,D2}:0.575234778555;XCPE1{core}:0.571421421176;MYOD1:0.52132005974;NR3C1:0.513347905502;STAT1,3:0.507331607894;TFAP2B:0.498994840762;GATA6:0.486901079383;XBP1:0.475315131543;TBX4,5:0.474870715598;T:0.473628459467;RBPJ:0.452692573097;ZEB1:0.436728441994;POU6F1:0.425845968064;HBP1_HMGB_SSRP1_UBTF:0.425188025818;BPTF:0.419620667783;STAT2,4,6:0.393860831467;ATF6:0.361182578164;ALX4:0.330582808594;HNF4A_NR2F1,2:0.327238007576;PAX3,7:0.312744488726;ZIC1..3:0.30107724872;ATF2:0.289847518113;HAND1,2:0.255699256738;RORA:0.227496836719;NANOG{mouse}:0.198340327048;GFI1B:0.19474595074;KLF4:0.189948855872;SREBF1,2:0.180802939822;GTF2A1,2:0.178180508195;NKX6-1,2:0.177328887644;ZNF384:0.135866441584;RXR{A,B,G}:0.125096293873;NFE2L1:0.117988567133;DMAP1_NCOR{1,2}_SMARC:0.115008485953;TEAD1:0.107393815312;NR6A1:0.0985343584752;FOXL1:0.0940157751501;NKX3-2:0.0879629697644;ZFP161:0.0872995819171;REST:0.0715338518104;NKX2-1,4:0.0668627410787;IKZF1:0.0642452261299;FOXP3:0.0642303310399;GZF1:0.0540789324732;JUN:0.0157291779115;SOX{8,9,10}:0.0142414730827;UFEwm:-0.00531240341523;ESRRA:-0.0276527097212;NFKB1_REL_RELA:-0.0475261658492;FOXN1:-0.0476540921354;PDX1:-0.0820683041112;ATF4:-0.134231865591;FOXA2:-0.140959610487;SOX2:-0.152705082024;FOX{F1,F2,J1}:-0.20288324786;PBX1:-0.217987218814;NANOG:-0.228650792297;NFIL3:-0.239202734369;NFY{A,B,C}:-0.258614908541;TP53:-0.338059831491;TOPORS:-0.33878988775;ZNF143:-0.355057990915;FOXP1:-0.36533049311;PITX1..3:-0.381609028295;E2F1..5:-0.394076108761;HNF1A:-0.395344962307;HSF1,2:-0.406052449362;HOX{A4,D4}:-0.412844848835;ZBTB6:-0.414169268442;TAL1_TCF{3,4,12}:-0.425677932586;RFX2..5_RFXANK_RFXAP:-0.434652866953;AIRE:-0.434871572072;PPARG:-0.484601310661;VSX1,2:-0.522908640904;DBP:-0.534143430856;LEF1_TCF7_TCF7L1,2:-0.555016960739;CUX2:-0.565162623726;CEBPA,B_DDIT3:-0.581484554201;ARID5B:-0.589107297309;ATF5_CREB3:-0.595907155376;GFI1:-0.599374159209;HOX{A6,A7,B6,B7}:-0.606177055834;NKX2-2,8:-0.612711991142;bHLH_family:-0.616667693751;SOX17:-0.659596444941;CREB1:-0.664192652447;FOX{I1,J2}:-0.675331985181;PAX2:-0.681885033588;NKX2-3_NKX2-5:-0.688207150729;YY1:-0.691150063581;ZBTB16:-0.697598141415;MYB:-0.701692913496;FOSL2:-0.706579188709;FOXD3:-0.714761253684;EN1,2:-0.755836440625;NRF1:-0.77378180592;CDX1,2,4:-0.785636371477;ADNP_IRX_SIX_ZHX:-0.831458028875;HLF:-0.832706601339;HOXA9_MEIS1:-0.843016589564;AHR_ARNT_ARNT2:-0.843901675863;CRX:-0.855839981303;PAX1,9:-0.857096081091;FOS_FOS{B,L1}_JUN{B,D}:-0.888447794032;NFE2:-0.912513714387;NFIX:-0.941773617481;POU3F1..4:-0.949371818142;LHX3,4:-0.958494511873;TFDP1:-0.983063774314;BACH2:-1.01179332142;CDC5L:-1.01217274958;OCT4_SOX2{dimer}:-1.01516396534;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.01714177026;PRRX1,2:-1.03422827135;NKX3-1:-1.12468976446;ELK1,4_GABP{A,B1}:-1.1404914729;RFX1:-1.14623244146;FOXM1:-1.15485587309;POU1F1:-1.2063775967;NFE2L2:-1.21863985762;HMGA1,2:-1.24754101171;PAX8:-1.29611247342;EVI1:-1.32129383993;ALX1:-1.3726480023;HIF1A:-1.47045293165;HOX{A5,B5}:-1.54578657493;FOXQ1:-1.56304704778;TEF:-1.57969340316;ONECUT1,2:-1.70199127161;PAX4:-1.77850677366;STAT5{A,B}:-1.7802596931 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10191-103E2;search_select_hide=table117:FF:10191-103E2 | |||
}} | }} |
Latest revision as of 12:26, 3 June 2020
Name: | vein, adult |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12844 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12844
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12844
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.154 |
10 | 10 | 0.109 |
100 | 100 | 0.0544 |
101 | 101 | 0.694 |
102 | 102 | 0.499 |
103 | 103 | 0.91 |
104 | 104 | 0.745 |
105 | 105 | 0.838 |
106 | 106 | 0.297 |
107 | 107 | 0.0402 |
108 | 108 | 0.58 |
109 | 109 | 0.285 |
11 | 11 | 0.553 |
110 | 110 | 0.325 |
111 | 111 | 0.461 |
112 | 112 | 0.345 |
113 | 113 | 0.0534 |
114 | 114 | 0.151 |
115 | 115 | 0.19 |
116 | 116 | 0.727 |
117 | 117 | 0.0706 |
118 | 118 | 0.0171 |
119 | 119 | 0.749 |
12 | 12 | 0.933 |
120 | 120 | 0.151 |
121 | 121 | 0.571 |
122 | 122 | 0.775 |
123 | 123 | 0.0905 |
124 | 124 | 0.456 |
125 | 125 | 0.353 |
126 | 126 | 0.998 |
127 | 127 | 0.402 |
128 | 128 | 0.198 |
129 | 129 | 0.464 |
13 | 13 | 0.00869 |
130 | 130 | 0.682 |
131 | 131 | 0.658 |
132 | 132 | 0.0616 |
133 | 133 | 0.00605 |
134 | 134 | 0.0448 |
135 | 135 | 0.00729 |
136 | 136 | 0.913 |
137 | 137 | 0.581 |
138 | 138 | 0.62 |
139 | 139 | 0.506 |
14 | 14 | 0.826 |
140 | 140 | 0.779 |
141 | 141 | 0.485 |
142 | 142 | 0.186 |
143 | 143 | 0.894 |
144 | 144 | 0.896 |
145 | 145 | 0.796 |
146 | 146 | 0.187 |
147 | 147 | 0.854 |
148 | 148 | 0.557 |
149 | 149 | 0.369 |
15 | 15 | 0.129 |
150 | 150 | 0.821 |
151 | 151 | 0.727 |
152 | 152 | 0.151 |
153 | 153 | 0.504 |
154 | 154 | 0.288 |
155 | 155 | 0.638 |
156 | 156 | 0.418 |
157 | 157 | 0.384 |
158 | 158 | 0.282 |
159 | 159 | 0.784 |
16 | 16 | 0.879 |
160 | 160 | 0.377 |
161 | 161 | 0.306 |
162 | 162 | 0.866 |
163 | 163 | 0.0726 |
164 | 164 | 0.0169 |
165 | 165 | 0.741 |
166 | 166 | 0.194 |
167 | 167 | 0.0143 |
168 | 168 | 0.0447 |
169 | 169 | 0.476 |
17 | 17 | 0.85 |
18 | 18 | 0.133 |
19 | 19 | 0.356 |
2 | 2 | 0.00336 |
20 | 20 | 0.00398 |
21 | 21 | 0.808 |
22 | 22 | 0.621 |
23 | 23 | 0.394 |
24 | 24 | 0.558 |
25 | 25 | 0.927 |
26 | 26 | 0.379 |
27 | 27 | 0.0302 |
28 | 28 | 0.544 |
29 | 29 | 0.112 |
3 | 3 | 0.422 |
30 | 30 | 0.0385 |
31 | 31 | 0.873 |
32 | 32 | 0.728 |
33 | 33 | 0.237 |
34 | 34 | 0.0597 |
35 | 35 | 0.835 |
36 | 36 | 0.0663 |
37 | 37 | 0.391 |
38 | 38 | 0.986 |
39 | 39 | 0.44 |
4 | 4 | 0.48 |
40 | 40 | 0.184 |
41 | 41 | 0.249 |
42 | 42 | 0.409 |
43 | 43 | 0.773 |
44 | 44 | 0.232 |
45 | 45 | 0.121 |
46 | 46 | 0.729 |
47 | 47 | 0.428 |
48 | 48 | 0.525 |
49 | 49 | 0.287 |
5 | 5 | 0.282 |
50 | 50 | 0.38 |
51 | 51 | 0.953 |
52 | 52 | 0.347 |
53 | 53 | 0.703 |
54 | 54 | 0.838 |
55 | 55 | 0.785 |
56 | 56 | 0.897 |
57 | 57 | 0.0991 |
58 | 58 | 0.541 |
59 | 59 | 0.189 |
6 | 6 | 0.414 |
60 | 60 | 0.402 |
61 | 61 | 0.902 |
62 | 62 | 0.673 |
63 | 63 | 0.945 |
64 | 64 | 0.517 |
65 | 65 | 0.547 |
66 | 66 | 0.00731 |
67 | 67 | 0.506 |
68 | 68 | 0.417 |
69 | 69 | 0.801 |
7 | 7 | 0.899 |
70 | 70 | 0.174 |
71 | 71 | 0.137 |
72 | 72 | 0.167 |
73 | 73 | 0.613 |
74 | 74 | 0.642 |
75 | 75 | 0.0884 |
76 | 76 | 0.0292 |
77 | 77 | 0.124 |
78 | 78 | 0.566 |
79 | 79 | 0.22 |
8 | 8 | 0.834 |
80 | 80 | 8.99381e-4 |
81 | 81 | 0.622 |
82 | 82 | 0.443 |
83 | 83 | 0.739 |
84 | 84 | 0.271 |
85 | 85 | 0.433 |
86 | 86 | 0.375 |
87 | 87 | 0.64 |
88 | 88 | 0.722 |
89 | 89 | 0.613 |
9 | 9 | 0.0943 |
90 | 90 | 0.0889 |
91 | 91 | 0.175 |
92 | 92 | 0.617 |
93 | 93 | 0.297 |
94 | 94 | 0.356 |
95 | 95 | 0.192 |
96 | 96 | 0.543 |
97 | 97 | 0.58 |
98 | 98 | 0.59 |
99 | 99 | 0.438 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12844
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010191 human vein - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010191 (human vein - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0006965 (vascular cord)
UBERON:0010316 (germ layer / neural crest)