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{{f5samples
{{f5samples
|id=FF:10413-106B8
|DRA_sample_Accession=CAGE@SAMD00005418
|name=glioma cell line:GI-1
|accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582;DRZ011547;DRZ012932
|sample_id=10413
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|rna_tube_id=106B8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093
|rna_position=B8
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0763
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr7:27153454..27153469,-!p2@HOXA3!1.64!42.48!HOXA3;;chr8:72756637..72756664,-!p3@MSC!1.54!38.43!MSC;;chr2:176969228..176969260,+!p1@HOXD11!1.49!30.05!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!1.47!58.95!C11orf9;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.78!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!1.45!27.45!ZMAT4;;chr8:72756667..72756736,-!p2@MSC!1.43!40.45!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.88!TWIST1;;chr8:72756063..72756125,-!p1@MSC!1.37!44.79!MSC;;chr7:27183291..27183324,-!p1@HOXA5!1.34!20.80!HOXA5;;chr8:72756267..72756296,-!p4@MSC!1.29!26.87!MSC;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.49!HOXD11;;chr1:119530493..119530572,-!p1@TBX15!1.26!17.05!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!1.24!331.43!SNAI2;;chr7:27183263..27183284,-!p2@HOXA5!1.24!16.47!HOXA5;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.98!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!1.20!22.54!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.45!KDM5D;;chr7:27183114..27183138,-!p3@HOXA5!1.16!13.58!HOXA5;;chr7:27183191..27183214,-!p4@HOXA5!1.11!11.85!HOXA5;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.85!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.52!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!1.10!26.29!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.34!PITX1;;chr8:72755987..72756002,-!p7@MSC!1.09!11.27!MSC;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.81!TOX2;;chr12:85673977..85674015,+!p1@ALX1!1.05!10.11!ALX1;;chr1:78149041..78149142,-!p1@ZZZ3!1.04!189.84!ZZZ3;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.27!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!1.01!9.25!HOXA3;;chr1:158979872..158979898,+!p3@IFI16!1.00!28.32!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.45!TFAP2A;;chr15:37392094..37392116,-!p6@MEIS2!0.98!10.69!MEIS2;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.72!GATA6;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.07!TOX2;;chr8:37553292..37553317,+!p1@ZNF703!0.93!186.37!ZNF703;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.51!HOXA2;;chr7:27153613..27153630,-!p6@HOXA3!0.93!7.51!HOXA3;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.51!PAX3;;chr12:26277817..26277863,-!p2@BHLHE41!0.92!10.11!BHLHE41;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.38!TFAP2A;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.22!ZIC1;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.27!ZFP64;;chr21:38071430..38071456,+!p1@SIM2!0.90!6.93!SIM2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.93!PKNOX2;;chr2:157189180..157189290,-!p1@NR4A2!0.89!36.99!NR4A2;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.65!FOXD1;;chr8:80679993..80680011,-!p1@HEY1!0.89!10.11!HEY1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.93!SHOX2;;chr1:59249645..59249656,-!p4@JUN!0.86!16.47!JUN;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.09!SKIL;;chr3:147111198..147111225,+!p4@ZIC1!0.85!6.07!ZIC1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.07!PITX1;;chr7:27183141..27183152,-!p6@HOXA5!0.85!6.07!HOXA5;;chr1:59165724..59165751,-!p1@MYSM1!0.84!143.32!MYSM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.87!ZFHX4;;chr1:164528616..164528660,+!p5@PBX1!0.84!12.71!PBX1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.80!MSC;;chr15:37390850..37390909,-!p3@MEIS2!0.83!11.85!MEIS2;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.78!FOXG1;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.29!ZBTB20;;chr2:172967621..172967637,-!p1@DLX2!0.81!15.60!DLX2;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.09!GATA6;;chr1:164528410..164528428,+!p1@PBX1!0.80!43.05!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.03!GLI3;;chr1:170633348..170633399,+!p2@PRRX1!0.80!7.51!PRRX1;;chr8:72756023..72756055,-!p6@MSC!0.80!6.65!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.94!BHLHE41;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.14!IFI16;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.07!RUNX2;;chr8:72756380..72756427,-!p8@MSC!0.79!5.20!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.20!ZFHX4;;chr1:119530636..119530653,-!p2@TBX15!0.79!5.20!TBX15;;chr21:38071403..38071428,+!p2@SIM2!0.79!5.20!SIM2;;chr20:50179368..50179392,-!p2@NFATC2!0.78!6.65!NFATC2;;chr19:50432453..50432468,+!p1@ATF5!0.77!302.53!ATF5;;chr6:45390002..45390023,+!p6@RUNX2!0.77!8.96!RUNX2;;chr15:76629123..76629151,+!p1@ISL2!0.77!5.49!ISL2;;chr16:51185172..51185197,-!p1@SALL1!0.77!4.91!SALL1;;chr12:77459306..77459365,-!p1@E2F7!0.76!66.17!E2F7;;chr15:37392724..37392757,-!p1@MEIS2!0.76!23.98!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.38!ZNF521;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.31!TBX2;;chr1:200379104..200379128,-!p2@ZNF281!0.74!11.85!ZNF281;;chr3:12329397..12329433,+!p2@PPARG!0.74!10.98!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.09!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.38!GATA6;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.33!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.33!DLX1;;chr6:28321909..28321965,-!p3@ZNF323!0.73!4.33!ZNF323;;chr7:19156632..19156652,-!p3@TWIST1!0.73!4.33!TWIST1;;chr7:27153590..27153608,-!p7@HOXA3!0.73!4.33!HOXA3;;chr1:164528445..164528459,+!p2@PBX1!0.72!14.45!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.42!HOXB2;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.27!EBF1;;chr1:164528687..164528711,+!p6@PBX1!0.71!4.91!PBX1;;chr1:78148324..78148365,-!p2@ZZZ3!0.70!43.34!ZZZ3;;chr21:36421535..36421610,-!p2@RUNX1!0.70!15.89!RUNX1;;chr17:46655730..46655791,-!p1@HOXB4!0.70!10.98!HOXB4;;chr8:128750175..128750201,+!p8@MYC!0.70!7.51!MYC;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.05!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.05!SOX11;;chr2:8822176..8822196,+!p1@ID2!0.69!633.09!ID2;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr15:37392616..37392638,-!p2@MEIS2!0.69!13.58!MEIS2;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.93!MLLT11;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.43!MAFB;;chr7:138666053..138666146,-!p1@KIAA1549!0.68!17.91!KIAA1549;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.68!8.96!ZNF395;;chr2:176969097..176969109,+!p3@HOXD11!0.68!3.76!HOXD11;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.76!PITX2;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.76!HAND2;;chr1:164528942..164528964,+!p11@PBX1!0.68!3.76!PBX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.76!PKNOX2;;chr14:37131058..37131139,+!p1@PAX9!0.68!3.76!PAX9;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.75!FOSB;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.45!IFI16;;chr1:78149157..78149168,-!p4@ZZZ3!0.67!4.33!ZZZ3;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.38!ZNF436;;chr19:42788636..42788660,+!p1@CIC!0.66!6.36!CIC;;chr7:17338266..17338282,+!p1@AHR!0.65!43.63!AHR;;chr3:71630980..71631110,-!p3@FOXP1!0.65!13.87!FOXP1;;chr3:168864315..168864339,-!p2@MECOM!0.65!6.07!MECOM;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.91!ARNT2;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.47!RFX8;;chr1:119530857..119530884,-!p4@TBX15!0.65!3.47!TBX15;;chr12:56414795..56414836,+!p4@IKZF4!0.65!3.47!IKZF4;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.69!ZNF415;;chr19:20188776..20188826,+!p1@ZNF90!0.64!10.11!ZNF90;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.96!RUNX2;;chr19:20011775..20011800,+!p2@ZNF93!0.64!6.65!ZNF93;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.49!IFI16;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.33!MEIS2;;chr3:169381420..169381535,-!p1@MECOM!0.64!4.05!MECOM;;chr20:306489..306564,+!p1@SOX12!0.63!42.19!SOX12;;chr1:211433275..211433335,+!p2@RCOR3!0.63!11.56!RCOR3;;chr1:164528911..164528940,+!p7@PBX1!0.63!5.20!PBX1;;chr12:54694758..54694805,-!p1@NFE2!0.63!4.05!NFE2;;chr17:70117153..70117174,+!p1@SOX9!0.62!39.30!SOX9;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.21!KLF7;;chr8:37553261..37553282,+!p2@ZNF703!0.62!28.90!ZNF703;;chr19:20011744..20011770,+!p1@ZNF93!0.62!14.16!ZNF93;;chr9:16870659..16870675,-!p2@BNC2!0.62!4.05!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.18!ZNF323;;chr6:45390137..45390148,+!p12@RUNX2!0.62!3.18!RUNX2;;chr8:49834430..49834446,-!p5@SNAI2!0.62!3.18!SNAI2;;chr8:72756194..72756208,-!p9@MSC!0.62!3.18!MSC;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.18!ZIC1;;chr4:174451370..174451387,-!p1@HAND2!0.62!3.18!HAND2;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.80!NR4A3;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.91!HOXB4;;chr12:26277929..26277955,-!p3@BHLHE41!0.61!4.62!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.51!GLI2;;chr10:64134120..64134183,+!p1@ZNF365!0.60!3.76!ZNF365;;chr8:80680024..80680046,-!p2@HEY1!0.60!3.47!HEY1;;chr7:64838786..64838809,+!p2@ZNF92!0.59!19.94!ZNF92;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.40!SMARCD3;;chr3:12329358..12329393,+!p3@PPARG!0.59!8.09!PPARG;;chr2:166326200..166326216,+!p1@CSRNP3!0.59!4.62!CSRNP3;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.89!RFX8;;chr11:32457075..32457095,-!p1@WT1!0.59!2.89!WT1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.89!SEBOX;;chr7:27153443..27153450,-!p8@HOXA3!0.59!2.89!HOXA3;;chr8:72756522..72756533,-!p13@MSC!0.59!2.89!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.59!2.89!RUNX1T1;;chr19:53289995..53290050,-!p1@ZNF600!0.58!13.87!ZNF600;;chr6:28411241..28411284,-!p1@ZSCAN23!0.58!10.40!ZSCAN23;;chr9:114287433..114287513,+!p1@ZNF483!0.58!8.38!ZNF483;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.91!EBF4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.58!4.62!ZNF853;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.33!HOXB7;;chr7:64467057..64467078,-!p1@ZNF117!0.57!62.99!ZNF117;;chr13:41593425..41593480,-!p1@ELF1!0.57!21.09!ELF1;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.29!CREB3L4;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.20!TBX2;;chr1:164528588..164528610,+!p8@PBX1!0.57!4.62!PBX1;;chr15:37390482..37390572,-!p7@MEIS2!0.57!4.05!MEIS2;;chr17:7590797..7590815,-!p1@TP53!0.56!143.32!TP53;;chr17:17740287..17740307,-!p1@SREBF1!0.56!87.55!SREBF1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.56!18.20!ZNF10;;chr16:79633894..79633954,-!p3@MAF!0.56!5.78!MAF;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.49!ZNF695;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.76!TBX2;;chr7:27183156..27183167,-!p8@HOXA5!0.56!2.60!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.56!2.60!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.60!SHOX2;;chr9:168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|sample_dev_stage=61 year old adult
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316
|sample_tissue=brain
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=61
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.45
|rna_od260/280=2.11
|sample_cell_type=glioblast
|sample_cell_line=GI-1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=glioma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=30.63625
|rna_concentration=1.22545
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10731,LSID691,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|ancestors_in_disease_facet=DOID:0050686,DOID:14566,DOID:162,DOID:3093,DOID:4
|sample_description=
|fonse_cell_line=FF:0100255
|fonse_cell_line=FF:0100255
|fonse_cell_line_closure=FF:0100255
|fonse_cell_line_closure=FF:0100255
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100711
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.ctss.bed.gz
|id=FF:10413-106B8
|is_a=EFO:0002091;;FF:0000210;;FF:0100711
|is_obsolete=
|library_id=CNhs10731
|library_id_phase_based=2:CNhs10731
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10413
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10413
|name=glioma cell line:GI-1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
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|profile_hcage=CNhs10731,LSID691,release008,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_catalog_number=
|rna_concentration=1.22545
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.45
|rna_od260/280=2.11
|rna_position=B8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106B8
|rna_weight_ug=30.63625
|sample_age=61
|sample_category=cell lines
|sample_cell_catalog=RCB0763
|sample_cell_line=GI-1
|sample_cell_lot=
|sample_cell_type=glioblast
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=61 year old adult
|sample_disease=glioma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.79012397123423e-268!GO:0043226;organelle;7.68591249828773e-225!GO:0043229;intracellular organelle;2.59445178760524e-224!GO:0043231;intracellular membrane-bound organelle;1.50298720925989e-222!GO:0043227;membrane-bound organelle;3.66410761189285e-222!GO:0005737;cytoplasm;1.21246132595492e-177!GO:0044422;organelle part;7.62966165081483e-149!GO:0044446;intracellular organelle part;3.15098625407877e-147!GO:0044444;cytoplasmic part;2.16963773975197e-123!GO:0005634;nucleus;5.37780221583568e-104!GO:0044238;primary metabolic process;9.62780209465725e-104!GO:0044237;cellular metabolic process;2.41600054723585e-103!GO:0043170;macromolecule metabolic process;7.55508384390624e-98!GO:0032991;macromolecular complex;3.69388687895809e-96!GO:0044428;nuclear part;8.2259517666724e-85!GO:0030529;ribonucleoprotein complex;1.93478178446223e-82!GO:0043233;organelle lumen;3.2054045491294e-80!GO:0031974;membrane-enclosed lumen;3.2054045491294e-80!GO:0005515;protein binding;3.24961795410599e-77!GO:0003723;RNA binding;3.95410643903928e-77!GO:0043283;biopolymer metabolic process;1.01761524454508e-65!GO:0010467;gene expression;1.47133608981748e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.25504946102125e-56!GO:0005739;mitochondrion;5.40708629679947e-54!GO:0006396;RNA processing;6.15558516840186e-54!GO:0031981;nuclear lumen;4.00034597441015e-53!GO:0016043;cellular component organization and biogenesis;1.61527483524498e-50!GO:0043234;protein complex;6.51650571739844e-49!GO:0031090;organelle membrane;1.53769759493973e-48!GO:0005840;ribosome;1.02306391414516e-46!GO:0019538;protein metabolic process;1.42195697907805e-46!GO:0033036;macromolecule localization;9.71543793072142e-46!GO:0015031;protein transport;2.37652443028503e-45!GO:0006412;translation;2.3247954365775e-43!GO:0016071;mRNA metabolic process;3.54363712339088e-43!GO:0044260;cellular macromolecule metabolic process;1.30964554605567e-42!GO:0044267;cellular protein metabolic process;9.99710966233204e-42!GO:0008104;protein localization;1.08784938304322e-41!GO:0045184;establishment of protein localization;4.3900700622903e-41!GO:0003735;structural constituent of ribosome;2.85795416861008e-40!GO:0008380;RNA splicing;1.81973435288876e-39!GO:0046907;intracellular transport;4.59385911212748e-39!GO:0003676;nucleic acid binding;7.75948463611515e-39!GO:0006397;mRNA processing;6.42264574736227e-37!GO:0009058;biosynthetic process;4.20086261367541e-36!GO:0033279;ribosomal subunit;7.10240716712842e-36!GO:0044429;mitochondrial part;8.63156176214176e-36!GO:0031967;organelle envelope;1.62840773018107e-35!GO:0043228;non-membrane-bound organelle;2.3908487830691e-35!GO:0043232;intracellular non-membrane-bound organelle;2.3908487830691e-35!GO:0031975;envelope;3.53533462220087e-35!GO:0005654;nucleoplasm;4.31046736441842e-34!GO:0016070;RNA metabolic process;1.01004327304944e-33!GO:0009059;macromolecule biosynthetic process;1.79962056495108e-33!GO:0044249;cellular biosynthetic process;4.13389965116817e-33!GO:0006996;organelle organization and biogenesis;6.3033759543836e-33!GO:0005829;cytosol;1.36439150646045e-32!GO:0006886;intracellular protein transport;2.0245787126469e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.80071604728634e-30!GO:0006259;DNA metabolic process;9.2229862489236e-30!GO:0000166;nucleotide binding;7.62080624984032e-29!GO:0044451;nucleoplasm part;1.19878284617691e-27!GO:0005681;spliceosome;2.66179366187843e-27!GO:0007049;cell cycle;7.10074426145896e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.8184172721259e-27!GO:0051649;establishment of cellular localization;1.64664609372531e-26!GO:0065003;macromolecular complex assembly;1.90117468467054e-26!GO:0051641;cellular localization;5.22256147211179e-26!GO:0022607;cellular component assembly;1.83469957253788e-23!GO:0016462;pyrophosphatase activity;1.43419270491228e-22!GO:0008134;transcription factor binding;2.59443483708178e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.90694208027913e-22!GO:0012505;endomembrane system;2.91839386620369e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.76146675066856e-22!GO:0017111;nucleoside-triphosphatase activity;4.05334449343427e-22!GO:0005783;endoplasmic reticulum;6.33686980423218e-22!GO:0005740;mitochondrial envelope;6.75881360310852e-22!GO:0006457;protein folding;9.13731975022155e-22!GO:0044445;cytosolic part;1.06515942148843e-21!GO:0016874;ligase activity;1.42900029812173e-20!GO:0031966;mitochondrial membrane;1.47794321143147e-20!GO:0032553;ribonucleotide binding;2.04570193470579e-20!GO:0032555;purine ribonucleotide binding;2.04570193470579e-20!GO:0019866;organelle inner membrane;2.34072412799197e-20!GO:0005730;nucleolus;7.12559041330624e-20!GO:0015935;small ribosomal subunit;1.38903782775804e-19!GO:0006119;oxidative phosphorylation;1.89000192816102e-19!GO:0017076;purine nucleotide binding;1.89000192816102e-19!GO:0006512;ubiquitin cycle;3.46872474287067e-19!GO:0022402;cell cycle process;7.46668072960382e-19!GO:0048770;pigment granule;9.59205274826102e-19!GO:0042470;melanosome;9.59205274826102e-19!GO:0022618;protein-RNA complex assembly;1.18607903529732e-18!GO:0005743;mitochondrial inner membrane;2.10873351053365e-18!GO:0006974;response to DNA damage stimulus;4.15243665583687e-18!GO:0044432;endoplasmic reticulum part;5.56017779088211e-18!GO:0015934;large ribosomal subunit;1.91950831161798e-17!GO:0043285;biopolymer catabolic process;2.81578797005814e-17!GO:0005524;ATP binding;2.93143577414375e-17!GO:0000278;mitotic cell cycle;3.94415905749547e-17!GO:0044265;cellular macromolecule catabolic process;9.8191369903128e-17!GO:0031980;mitochondrial lumen;1.12753398377362e-16!GO:0005759;mitochondrial matrix;1.12753398377362e-16!GO:0032559;adenyl ribonucleotide binding;1.16796782509043e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.53720303273275e-16!GO:0044455;mitochondrial membrane part;2.95195499690624e-16!GO:0019941;modification-dependent protein catabolic process;4.62794486215269e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.62794486215269e-16!GO:0044257;cellular protein catabolic process;6.3749011275012e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.37776769431957e-16!GO:0006281;DNA repair;1.05207183816382e-15!GO:0006605;protein targeting;1.36794089621605e-15!GO:0030554;adenyl nucleotide binding;1.50210739137621e-15!GO:0008135;translation factor activity, nucleic acid binding;1.82642236017247e-15!GO:0009057;macromolecule catabolic process;1.88276236603544e-15!GO:0030163;protein catabolic process;3.1335602774639e-15!GO:0043412;biopolymer modification;4.23607996814456e-15!GO:0031965;nuclear membrane;5.27336009490983e-15!GO:0048193;Golgi vesicle transport;5.78869719943477e-15!GO:0006366;transcription from RNA polymerase II promoter;6.28477440608437e-15!GO:0016192;vesicle-mediated transport;9.81438714024205e-15!GO:0005635;nuclear envelope;1.05450970586572e-14!GO:0003712;transcription cofactor activity;1.10908153916714e-14!GO:0051082;unfolded protein binding;1.27103389883417e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.54605151346061e-14!GO:0005794;Golgi apparatus;4.18492420355731e-14!GO:0005694;chromosome;7.4445644581194e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.29480814962961e-14!GO:0000375;RNA splicing, via transesterification reactions;8.29480814962961e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.29480814962961e-14!GO:0000087;M phase of mitotic cell cycle;1.06190897077497e-13!GO:0007067;mitosis;1.68751977221524e-13!GO:0051186;cofactor metabolic process;1.71964156484494e-13!GO:0006260;DNA replication;1.92174954043791e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.20744273589215e-13!GO:0044453;nuclear membrane part;3.04245304437697e-13!GO:0006464;protein modification process;3.07653480408592e-13!GO:0044248;cellular catabolic process;3.89584088730908e-13!GO:0051276;chromosome organization and biogenesis;4.02861430582197e-13!GO:0005746;mitochondrial respiratory chain;4.65320804507977e-13!GO:0016887;ATPase activity;5.62428925912051e-13!GO:0005761;mitochondrial ribosome;6.36763307292583e-13!GO:0000313;organellar ribosome;6.36763307292583e-13!GO:0005789;endoplasmic reticulum membrane;6.48103891755526e-13!GO:0022403;cell cycle phase;9.82115807818046e-13!GO:0042254;ribosome biogenesis and assembly;1.03889099036004e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.22091961889182e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.24857922989106e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.34203291716831e-12!GO:0051301;cell division;1.51971747983998e-12!GO:0050794;regulation of cellular process;1.88367988463024e-12!GO:0003743;translation initiation factor activity;1.90397746612111e-12!GO:0004386;helicase activity;2.40696245537398e-12!GO:0042623;ATPase activity, coupled;2.9633460789427e-12!GO:0006913;nucleocytoplasmic transport;4.48223058627191e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.54680062489645e-12!GO:0003954;NADH dehydrogenase activity;4.54680062489645e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.54680062489645e-12!GO:0016604;nuclear body;8.89552628690125e-12!GO:0009719;response to endogenous stimulus;8.98797021666861e-12!GO:0005793;ER-Golgi intermediate compartment;1.20981732627786e-11!GO:0044427;chromosomal part;1.52384094405162e-11!GO:0006413;translational initiation;1.593004839617e-11!GO:0051169;nuclear transport;1.60502536861304e-11!GO:0043687;post-translational protein modification;3.11278578283817e-11!GO:0008565;protein transporter activity;3.91370791057613e-11!GO:0015630;microtubule cytoskeleton;5.15955681427016e-11!GO:0005643;nuclear pore;5.52805406572735e-11!GO:0006732;coenzyme metabolic process;6.30830880607777e-11!GO:0019222;regulation of metabolic process;1.07957814430751e-10!GO:0051726;regulation of cell cycle;1.15352993560676e-10!GO:0006446;regulation of translational initiation;1.19343378133139e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.31895307427526e-10!GO:0042773;ATP synthesis coupled electron transport;1.31895307427526e-10!GO:0000074;regulation of progression through cell cycle;1.74856983881352e-10!GO:0000279;M phase;2.21375947704658e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.4136341960069e-10!GO:0008026;ATP-dependent helicase activity;2.46466142101856e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.57124302429118e-10!GO:0045271;respiratory chain complex I;3.57124302429118e-10!GO:0005747;mitochondrial respiratory chain complex I;3.57124302429118e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.09952708718166e-10!GO:0006399;tRNA metabolic process;6.16481828047595e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.48000492244248e-10!GO:0016607;nuclear speck;6.48000492244248e-10!GO:0050657;nucleic acid transport;7.78845253186427e-10!GO:0051236;establishment of RNA localization;7.78845253186427e-10!GO:0050658;RNA transport;7.78845253186427e-10!GO:0019787;small conjugating protein ligase activity;7.99521766134881e-10!GO:0006403;RNA localization;1.00724010747774e-09!GO:0008639;small protein conjugating enzyme activity;1.02260242614668e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.07496829291541e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.30390875861903e-09!GO:0006323;DNA packaging;1.53726131449426e-09!GO:0004842;ubiquitin-protein ligase activity;1.5405305146151e-09!GO:0016568;chromatin modification;1.81246282147664e-09!GO:0016881;acid-amino acid ligase activity;2.14793420653126e-09!GO:0006163;purine nucleotide metabolic process;2.33174646569157e-09!GO:0065002;intracellular protein transport across a membrane;2.5087584462063e-09!GO:0009259;ribonucleotide metabolic process;3.08574696124716e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.51013618453942e-09!GO:0046930;pore complex;4.7126915384989e-09!GO:0009150;purine ribonucleotide metabolic process;5.21739160634838e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.25628528406138e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.25628528406138e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.25628528406138e-09!GO:0012501;programmed cell death;7.06493674352847e-09!GO:0006164;purine nucleotide biosynthetic process;7.99073474137523e-09!GO:0050789;regulation of biological process;1.08252094410945e-08!GO:0017038;protein import;1.11942813338475e-08!GO:0006350;transcription;1.1266779488778e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.15762998112218e-08!GO:0043566;structure-specific DNA binding;1.22903828535786e-08!GO:0006915;apoptosis;1.2596470296611e-08!GO:0043038;amino acid activation;1.49939699093812e-08!GO:0006418;tRNA aminoacylation for protein translation;1.49939699093812e-08!GO:0043039;tRNA aminoacylation;1.49939699093812e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.70769531687924e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.63205327524464e-08!GO:0031323;regulation of cellular metabolic process;2.77027339888675e-08!GO:0005667;transcription factor complex;2.87335231468481e-08!GO:0015986;ATP synthesis coupled proton transport;2.91862659362561e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.91862659362561e-08!GO:0009056;catabolic process;2.95659639705412e-08!GO:0009260;ribonucleotide biosynthetic process;3.29054334658883e-08!GO:0006364;rRNA processing;3.78908153044834e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.86241315371076e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.86241315371076e-08!GO:0009141;nucleoside triphosphate metabolic process;4.23019217607884e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.25975905423956e-08!GO:0009055;electron carrier activity;4.76983901106877e-08!GO:0016072;rRNA metabolic process;5.10358404963196e-08!GO:0051028;mRNA transport;5.80830753351693e-08!GO:0008219;cell death;5.82416518673164e-08!GO:0016265;death;5.82416518673164e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.56195030999342e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.78887083790691e-08!GO:0046034;ATP metabolic process;8.65714514105962e-08!GO:0048523;negative regulation of cellular process;9.36792496380201e-08!GO:0003924;GTPase activity;9.64101756709421e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.66327800168138e-08!GO:0005768;endosome;1.004472915633e-07!GO:0019829;cation-transporting ATPase activity;1.04981742676089e-07!GO:0006461;protein complex assembly;1.09103377172581e-07!GO:0009060;aerobic respiration;1.1307842876974e-07!GO:0045333;cellular respiration;1.21649448126625e-07!GO:0016563;transcription activator activity;1.23178699245716e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.24990592865462e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.3167561491229e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.3167561491229e-07!GO:0003713;transcription coactivator activity;1.41424841698176e-07!GO:0003697;single-stranded DNA binding;1.83096618499496e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.97575917418939e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.97575917418939e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.0254109172709e-07!GO:0003714;transcription corepressor activity;2.75505589849298e-07!GO:0016564;transcription repressor activity;2.89878941083029e-07!GO:0048475;coated membrane;3.012146032021e-07!GO:0030117;membrane coat;3.012146032021e-07!GO:0006754;ATP biosynthetic process;3.6684696589638e-07!GO:0006753;nucleoside phosphate metabolic process;3.6684696589638e-07!GO:0031324;negative regulation of cellular metabolic process;3.78984139799798e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.84353222855024e-07!GO:0051188;cofactor biosynthetic process;3.84353222855024e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.88736920076491e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.42586966449182e-07!GO:0005788;endoplasmic reticulum lumen;6.51847203701349e-07!GO:0032774;RNA biosynthetic process;6.80603318638369e-07!GO:0000245;spliceosome assembly;7.62020968625136e-07!GO:0006351;transcription, DNA-dependent;9.14976047838176e-07!GO:0005813;centrosome;1.09479425541419e-06!GO:0010468;regulation of gene expression;1.10131115507602e-06!GO:0006099;tricarboxylic acid cycle;1.16067888642672e-06!GO:0046356;acetyl-CoA catabolic process;1.16067888642672e-06!GO:0030120;vesicle coat;1.23539462429485e-06!GO:0030662;coated vesicle membrane;1.23539462429485e-06!GO:0051170;nuclear import;1.93158636497582e-06!GO:0005815;microtubule organizing center;1.94540776964948e-06!GO:0006606;protein import into nucleus;1.99588641440159e-06!GO:0007005;mitochondrion organization and biogenesis;2.02650780901823e-06!GO:0006261;DNA-dependent DNA replication;2.14552483273781e-06!GO:0016779;nucleotidyltransferase activity;2.14552483273781e-06!GO:0051187;cofactor catabolic process;2.408860156771e-06!GO:0009117;nucleotide metabolic process;2.45473889066175e-06!GO:0044431;Golgi apparatus part;2.55494349491622e-06!GO:0005819;spindle;2.5950684872561e-06!GO:0005770;late endosome;2.92487700861572e-06!GO:0051789;response to protein stimulus;3.12332772105703e-06!GO:0006986;response to unfolded protein;3.12332772105703e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.23532565524803e-06!GO:0009109;coenzyme catabolic process;3.37449242874721e-06!GO:0048519;negative regulation of biological process;3.58522007543759e-06!GO:0006084;acetyl-CoA metabolic process;3.75207175139117e-06!GO:0031982;vesicle;3.81799714178169e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.89563388053346e-06!GO:0044440;endosomal part;3.94151645746967e-06!GO:0010008;endosome membrane;3.94151645746967e-06!GO:0008654;phospholipid biosynthetic process;4.02345181515811e-06!GO:0005773;vacuole;4.02838272646026e-06!GO:0031988;membrane-bound vesicle;4.31058979243941e-06!GO:0032446;protein modification by small protein conjugation;4.56073680221693e-06!GO:0006752;group transfer coenzyme metabolic process;4.81820991889779e-06!GO:0009892;negative regulation of metabolic process;4.84822524779746e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.89282043702335e-06!GO:0006613;cotranslational protein targeting to membrane;5.21382638661973e-06!GO:0045786;negative regulation of progression through cell cycle;5.24622793031476e-06!GO:0031410;cytoplasmic vesicle;5.60662544838301e-06!GO:0005525;GTP binding;5.61853187345516e-06!GO:0016859;cis-trans isomerase activity;5.66299533463103e-06!GO:0016740;transferase activity;5.70247644192548e-06!GO:0045259;proton-transporting ATP synthase complex;5.89951333609132e-06!GO:0016853;isomerase activity;6.07300735328128e-06!GO:0043067;regulation of programmed cell death;6.07300735328128e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.59068881816265e-06!GO:0051427;hormone receptor binding;7.6361012662045e-06!GO:0016787;hydrolase activity;7.97305825296629e-06!GO:0016567;protein ubiquitination;8.47404410405671e-06!GO:0009108;coenzyme biosynthetic process;9.96262737372275e-06!GO:0042981;regulation of apoptosis;1.02924494077937e-05!GO:0045449;regulation of transcription;1.22663355283453e-05!GO:0065004;protein-DNA complex assembly;1.31764484924749e-05!GO:0000151;ubiquitin ligase complex;1.39451297425717e-05!GO:0000075;cell cycle checkpoint;1.3954806312648e-05!GO:0051246;regulation of protein metabolic process;1.39923124991202e-05!GO:0003724;RNA helicase activity;1.41468745386063e-05!GO:0000785;chromatin;1.61330793789143e-05!GO:0005657;replication fork;1.622949977342e-05!GO:0035257;nuclear hormone receptor binding;1.64756416705934e-05!GO:0030867;rough endoplasmic reticulum membrane;2.05385661807378e-05!GO:0003690;double-stranded DNA binding;2.09525802574563e-05!GO:0000323;lytic vacuole;2.38578769855124e-05!GO:0005764;lysosome;2.38578769855124e-05!GO:0016481;negative regulation of transcription;2.3868447095765e-05!GO:0006793;phosphorus metabolic process;2.49103952901035e-05!GO:0006796;phosphate metabolic process;2.49103952901035e-05!GO:0007051;spindle organization and biogenesis;3.1951318812154e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.42647352560398e-05!GO:0007010;cytoskeleton organization and biogenesis;4.22518210148302e-05!GO:0051329;interphase of mitotic cell cycle;4.92251473168327e-05!GO:0051168;nuclear export;5.21895335756805e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.9209139523392e-05!GO:0005798;Golgi-associated vesicle;6.06032091191333e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.09588215604792e-05!GO:0000775;chromosome, pericentric region;6.1080993884357e-05!GO:0032561;guanyl ribonucleotide binding;6.11819426427827e-05!GO:0019001;guanyl nucleotide binding;6.11819426427827e-05!GO:0043069;negative regulation of programmed cell death;6.67559674751905e-05!GO:0006355;regulation of transcription, DNA-dependent;6.79486826105561e-05!GO:0043623;cellular protein complex assembly;6.81735549463678e-05!GO:0016310;phosphorylation;7.08932636829179e-05!GO:0003899;DNA-directed RNA polymerase activity;7.10529231707925e-05!GO:0003682;chromatin binding;7.10529231707925e-05!GO:0043021;ribonucleoprotein binding;7.18371557463509e-05!GO:0006333;chromatin assembly or disassembly;7.22446909986814e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.60888426652854e-05!GO:0065007;biological regulation;7.89017691142695e-05!GO:0005762;mitochondrial large ribosomal subunit;8.1934431541736e-05!GO:0000315;organellar large ribosomal subunit;8.1934431541736e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.77324302472403e-05!GO:0016363;nuclear matrix;9.07764578139574e-05!GO:0051325;interphase;0.000100414963882466!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103667092767131!GO:0005769;early endosome;0.000103890316440209!GO:0003729;mRNA binding;0.000118312234102862!GO:0043066;negative regulation of apoptosis;0.000118920701907377!GO:0006352;transcription initiation;0.000119106881592646!GO:0006302;double-strand break repair;0.000121725626101929!GO:0005048;signal sequence binding;0.000121725626101929!GO:0005874;microtubule;0.000129675484991757!GO:0016251;general RNA polymerase II transcription factor activity;0.000131960877485411!GO:0000139;Golgi membrane;0.000144061103883196!GO:0004576;oligosaccharyl transferase activity;0.000154225080716159!GO:0019899;enzyme binding;0.00015822893929459!GO:0008250;oligosaccharyl transferase complex;0.000159031760031034!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000172729406766917!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000211613018374243!GO:0005791;rough endoplasmic reticulum;0.000214286033805999!GO:0008094;DNA-dependent ATPase activity;0.000219533522985891!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000236490803172327!GO:0030133;transport vesicle;0.000242340145106229!GO:0046474;glycerophospholipid biosynthetic process;0.000242455744091036!GO:0000314;organellar small ribosomal subunit;0.000249414277651301!GO:0005763;mitochondrial small ribosomal subunit;0.000249414277651301!GO:0045454;cell redox homeostasis;0.000263032837923578!GO:0031968;organelle outer membrane;0.000282453299532574!GO:0006612;protein targeting to membrane;0.000285818405700604!GO:0003702;RNA polymerase II transcription factor activity;0.000294365090860502!GO:0004298;threonine endopeptidase activity;0.000302865727891865!GO:0019867;outer membrane;0.000309967171913279!GO:0046489;phosphoinositide biosynthetic process;0.000311478849740267!GO:0003677;DNA binding;0.000315644302806029!GO:0051052;regulation of DNA metabolic process;0.00031907265343325!GO:0008186;RNA-dependent ATPase activity;0.00032844248665285!GO:0000776;kinetochore;0.000361404508050476!GO:0019843;rRNA binding;0.000366436016209783!GO:0006891;intra-Golgi vesicle-mediated transport;0.000370975365200823!GO:0031072;heat shock protein binding;0.000413528186733855!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000503725300682774!GO:0006383;transcription from RNA polymerase III promoter;0.000503786367607033!GO:0009165;nucleotide biosynthetic process;0.000518390142149789!GO:0006916;anti-apoptosis;0.000520679952720303!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000592077786520872!GO:0006338;chromatin remodeling;0.000622791078222246!GO:0031252;leading edge;0.000647168078710573!GO:0008022;protein C-terminus binding;0.000685550250582142!GO:0003678;DNA helicase activity;0.0006949803836077!GO:0006310;DNA recombination;0.00071061566988132!GO:0005885;Arp2/3 protein complex;0.000723209263518646!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000759170043401807!GO:0016491;oxidoreductase activity;0.00078415826610605!GO:0006091;generation of precursor metabolites and energy;0.000800287749156228!GO:0007093;mitotic cell cycle checkpoint;0.00081607857857041!GO:0005905;coated pit;0.000837001556771242!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000869891600491485!GO:0030880;RNA polymerase complex;0.000888871486062304!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000968773335674701!GO:0004004;ATP-dependent RNA helicase activity;0.000968967832033942!GO:0030521;androgen receptor signaling pathway;0.000998610826738119!GO:0045045;secretory pathway;0.00110067042472898!GO:0005741;mitochondrial outer membrane;0.00110563627941541!GO:0007040;lysosome organization and biogenesis;0.00111222594852201!GO:0051920;peroxiredoxin activity;0.00125086837624007!GO:0018196;peptidyl-asparagine modification;0.00129151456020412!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00129151456020412!GO:0006402;mRNA catabolic process;0.00129659278015513!GO:0046467;membrane lipid biosynthetic process;0.00136909365298606!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00144342791793872!GO:0015399;primary active transmembrane transporter activity;0.00144342791793872!GO:0045892;negative regulation of transcription, DNA-dependent;0.00151478609593222!GO:0007059;chromosome segregation;0.00154353653313762!GO:0045893;positive regulation of transcription, DNA-dependent;0.00159406323526193!GO:0000059;protein import into nucleus, docking;0.00164695649108461!GO:0008139;nuclear localization sequence binding;0.00167723972378484!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00171222471700344!GO:0000428;DNA-directed RNA polymerase complex;0.00171222471700344!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00182769515092738!GO:0007017;microtubule-based process;0.00189473609963677!GO:0044452;nucleolar part;0.0019436575064451!GO:0048500;signal recognition particle;0.00197284243037964!GO:0007052;mitotic spindle organization and biogenesis;0.00203230566636979!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00206939401792612!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00206939401792612!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00206939401792612!GO:0030036;actin cytoskeleton organization and biogenesis;0.00207913004624179!GO:0030134;ER to Golgi transport vesicle;0.00211828431314062!GO:0016197;endosome transport;0.0023400524154381!GO:0043681;protein import into mitochondrion;0.00250090251991282!GO:0007033;vacuole organization and biogenesis;0.00252901601155824!GO:0006626;protein targeting to mitochondrion;0.00255006817559302!GO:0030384;phosphoinositide metabolic process;0.00255266422715528!GO:0007243;protein kinase cascade;0.0026084509000737!GO:0003684;damaged DNA binding;0.00261763093683804!GO:0007088;regulation of mitosis;0.00278657898927836!GO:0030663;COPI coated vesicle membrane;0.0029021821279108!GO:0030126;COPI vesicle coat;0.0029021821279108!GO:0006818;hydrogen transport;0.00301105866080519!GO:0030176;integral to endoplasmic reticulum membrane;0.00306771956410133!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00308979597116987!GO:0035258;steroid hormone receptor binding;0.00313998608627332!GO:0048522;positive regulation of cellular process;0.00318073655436032!GO:0015992;proton transport;0.00318073655436032!GO:0051087;chaperone binding;0.00321496839499738!GO:0008033;tRNA processing;0.00325643053823224!GO:0030518;steroid hormone receptor signaling pathway;0.00327003394309896!GO:0045941;positive regulation of transcription;0.00334289831546757!GO:0030127;COPII vesicle coat;0.00334841084625376!GO:0012507;ER to Golgi transport vesicle membrane;0.00334841084625376!GO:0015631;tubulin binding;0.00335184400299421!GO:0008361;regulation of cell size;0.00340086314339226!GO:0048471;perinuclear region of cytoplasm;0.00340335274599531!GO:0004527;exonuclease activity;0.00347871952226628!GO:0008312;7S RNA binding;0.00364159521337337!GO:0006650;glycerophospholipid metabolic process;0.00365303586712819!GO:0007050;cell cycle arrest;0.00399890320002452!GO:0004674;protein serine/threonine kinase activity;0.00410551009924607!GO:0030137;COPI-coated vesicle;0.00415612935141997!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00442272235309729!GO:0045047;protein targeting to ER;0.00442272235309729!GO:0006505;GPI anchor metabolic process;0.00480094912225549!GO:0016126;sterol biosynthetic process;0.00483031782776731!GO:0008092;cytoskeletal protein binding;0.00485570880766801!GO:0000049;tRNA binding;0.00488312723261563!GO:0006506;GPI anchor biosynthetic process;0.00489951199450591!GO:0005684;U2-dependent spliceosome;0.00490530158270162!GO:0006401;RNA catabolic process;0.00497255576795669!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00506941324431434!GO:0007006;mitochondrial membrane organization and biogenesis;0.00517221891754008!GO:0005876;spindle microtubule;0.00517221891754008!GO:0042158;lipoprotein biosynthetic process;0.00517573373576995!GO:0030658;transport vesicle membrane;0.0052079064242622!GO:0006405;RNA export from nucleus;0.0052079064242622!GO:0005637;nuclear inner membrane;0.00533945569171252!GO:0042802;identical protein binding;0.00553245336547989!GO:0006839;mitochondrial transport;0.00568552629777763!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00580161632007927!GO:0006414;translational elongation;0.00588339213846519!GO:0005869;dynactin complex;0.00602644293095858!GO:0031124;mRNA 3'-end processing;0.00612831134398376!GO:0006497;protein amino acid lipidation;0.00624513920522879!GO:0051252;regulation of RNA metabolic process;0.00630820558468883!GO:0030118;clathrin coat;0.00634602488632089!GO:0006275;regulation of DNA replication;0.00644044082120348!GO:0016049;cell growth;0.00655852206924696!GO:0051287;NAD binding;0.00662049330474953!GO:0032200;telomere organization and biogenesis;0.00669392113275032!GO:0000723;telomere maintenance;0.00669392113275032!GO:0006376;mRNA splice site selection;0.00678510013795359!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00678510013795359!GO:0008270;zinc ion binding;0.00679018427120615!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00698769891434582!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00698769891434582!GO:0008168;methyltransferase activity;0.00703056624438445!GO:0008610;lipid biosynthetic process;0.007296381878013!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00733394648823069!GO:0048487;beta-tubulin binding;0.0073702908636225!GO:0032508;DNA duplex unwinding;0.00753368606915894!GO:0032392;DNA geometric change;0.00753368606915894!GO:0016741;transferase activity, transferring one-carbon groups;0.00761125823491582!GO:0006595;polyamine metabolic process;0.00770979579550046!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0078738387696495!GO:0017166;vinculin binding;0.00792289233004408!GO:0030029;actin filament-based process;0.0079882397522213!GO:0006611;protein export from nucleus;0.00820999021720435!GO:0051101;regulation of DNA binding;0.00821008850011901!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00856704988193684!GO:0022890;inorganic cation transmembrane transporter activity;0.00856791573829427!GO:0031902;late endosome membrane;0.00864905890061477!GO:0006892;post-Golgi vesicle-mediated transport;0.00875991839591941!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00885413175959027!GO:0003711;transcription elongation regulator activity;0.00897316360487226!GO:0000096;sulfur amino acid metabolic process;0.00901763343810174!GO:0006672;ceramide metabolic process;0.00920892661327421!GO:0031901;early endosome membrane;0.00933446768002442!GO:0043433;negative regulation of transcription factor activity;0.00935700331579047!GO:0006984;ER-nuclear signaling pathway;0.00971373958936816!GO:0044262;cellular carbohydrate metabolic process;0.0106773114333417!GO:0043284;biopolymer biosynthetic process;0.0107777990912954!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0111792341046681!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0112156548616147!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0112605113882309!GO:0005832;chaperonin-containing T-complex;0.0113457573324757!GO:0008180;signalosome;0.011508584787825!GO:0005669;transcription factor TFIID complex;0.0115349753104691!GO:0032039;integrator complex;0.0115685736975222!GO:0000910;cytokinesis;0.011702302609212!GO:0000082;G1/S transition of mitotic cell cycle;0.0118167318749282!GO:0007004;telomere maintenance via telomerase;0.0119117373479098!GO:0000922;spindle pole;0.0119527268912642!GO:0046914;transition metal ion binding;0.0119629005363655!GO:0043130;ubiquitin binding;0.0119912422680842!GO:0032182;small conjugating protein binding;0.0119912422680842!GO:0043022;ribosome binding;0.0124122833210925!GO:0006268;DNA unwinding during replication;0.0126994123493514!GO:0043492;ATPase activity, coupled to movement of substances;0.0127753805341434!GO:0030660;Golgi-associated vesicle membrane;0.0130252180441106!GO:0030433;ER-associated protein catabolic process;0.013353200208288!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.013353200208288!GO:0000339;RNA cap binding;0.0135035443817798!GO:0016044;membrane organization and biogenesis;0.0135409944722131!GO:0050681;androgen receptor binding;0.0139966178531692!GO:0006695;cholesterol biosynthetic process;0.0139966178531692!GO:0005862;muscle thin filament tropomyosin;0.0141735379264244!GO:0051539;4 iron, 4 sulfur cluster binding;0.0141761129801486!GO:0005774;vacuolar membrane;0.0143364167207805!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0144062280728117!GO:0043488;regulation of mRNA stability;0.0144062280728117!GO:0043487;regulation of RNA stability;0.0144062280728117!GO:0030522;intracellular receptor-mediated signaling pathway;0.0145546651451078!GO:0004177;aminopeptidase activity;0.0151625556662506!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.01526091909699!GO:0015002;heme-copper terminal oxidase activity;0.01526091909699!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.01526091909699!GO:0004129;cytochrome-c oxidase activity;0.01526091909699!GO:0046966;thyroid hormone receptor binding;0.0153768315320997!GO:0047485;protein N-terminus binding;0.0154068096907672!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0154940261595306!GO:0051059;NF-kappaB binding;0.0157006537675789!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.016221263015928!GO:0003923;GPI-anchor transamidase activity;0.0162668908899298!GO:0016255;attachment of GPI anchor to protein;0.0162668908899298!GO:0042765;GPI-anchor transamidase complex;0.0162668908899298!GO:0051540;metal cluster binding;0.0164472489635396!GO:0051536;iron-sulfur cluster binding;0.0164472489635396!GO:0006378;mRNA polyadenylation;0.017463281264433!GO:0007021;tubulin folding;0.0175611190931504!GO:0030119;AP-type membrane coat adaptor complex;0.0175666896215223!GO:0031625;ubiquitin protein ligase binding;0.0179884409684806!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0186706951609299!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0187022674946701!GO:0065009;regulation of a molecular function;0.0190556123698183!GO:0031123;RNA 3'-end processing;0.019131986782822!GO:0042393;histone binding;0.0191688480806517!GO:0006289;nucleotide-excision repair;0.0193334603402176!GO:0030132;clathrin coat of coated pit;0.0196149147592377!GO:0006950;response to stress;0.0198165968396443!GO:0046483;heterocycle metabolic process;0.0199667053219039!GO:0046519;sphingoid metabolic process;0.0199667053219039!GO:0008097;5S rRNA binding;0.0208445131522055!GO:0000209;protein polyubiquitination;0.0209039713853869!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0216642929422188!GO:0030659;cytoplasmic vesicle membrane;0.0217543162685893!GO:0016407;acetyltransferase activity;0.0229434295145294!GO:0051098;regulation of binding;0.0230638596941043!GO:0006607;NLS-bearing substrate import into nucleus;0.0235547043147798!GO:0006643;membrane lipid metabolic process;0.0240484841489613!GO:0006467;protein thiol-disulfide exchange;0.0243545607741867!GO:0004518;nuclease activity;0.0246741619361719!GO:0000118;histone deacetylase complex;0.0249745313600502!GO:0033673;negative regulation of kinase activity;0.0249745313600502!GO:0006469;negative regulation of protein kinase activity;0.0249745313600502!GO:0031529;ruffle organization and biogenesis;0.0251190932099046!GO:0016272;prefoldin complex;0.0261712696381155!GO:0043624;cellular protein complex disassembly;0.0262913775982383!GO:0030131;clathrin adaptor complex;0.0269051695663847!GO:0000097;sulfur amino acid biosynthetic process;0.0272719176960472!GO:0008601;protein phosphatase type 2A regulator activity;0.02737189007069!GO:0007569;cell aging;0.027684794524493!GO:0043596;nuclear replication fork;0.027684794524493!GO:0051452;cellular pH reduction;0.0281219831940729!GO:0051453;regulation of cellular pH;0.0281219831940729!GO:0045851;pH reduction;0.0281219831940729!GO:0046983;protein dimerization activity;0.0282687634994406!GO:0009451;RNA modification;0.028996760960254!GO:0006979;response to oxidative stress;0.0295752073440604!GO:0007034;vacuolar transport;0.0298058485849873!GO:0030224;monocyte differentiation;0.0298651935544947!GO:0001558;regulation of cell growth;0.0299953809475549!GO:0044437;vacuolar part;0.0302616600550574!GO:0016180;snRNA processing;0.0302710546919375!GO:0016073;snRNA metabolic process;0.0302710546919375!GO:0022408;negative regulation of cell-cell adhesion;0.0302710546919375!GO:0032940;secretion by cell;0.0304230051314388!GO:0030503;regulation of cell redox homeostasis;0.0311338268187455!GO:0006284;base-excision repair;0.0314516321673582!GO:0051348;negative regulation of transferase activity;0.031739488537402!GO:0005784;translocon complex;0.0321254054032976!GO:0006740;NADPH regeneration;0.0321535223633212!GO:0006098;pentose-phosphate shunt;0.0321535223633212!GO:0044433;cytoplasmic vesicle part;0.0330400012644244!GO:0003746;translation elongation factor activity;0.0331974094312503!GO:0006509;membrane protein ectodomain proteolysis;0.0334311560905236!GO:0033619;membrane protein proteolysis;0.0334311560905236!GO:0008652;amino acid biosynthetic process;0.0334999517005729!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0335319601061777!GO:0008408;3'-5' exonuclease activity;0.0339525518583339!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.033959845603368!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339957534945327!GO:0035035;histone acetyltransferase binding;0.0341446016478341!GO:0007264;small GTPase mediated signal transduction;0.0341446016478341!GO:0008320;protein transmembrane transporter activity;0.0344891031884541!GO:0030027;lamellipodium;0.0349638281045793!GO:0017134;fibroblast growth factor binding;0.0353454279802471!GO:0000228;nuclear chromosome;0.0355186119368641!GO:0006778;porphyrin metabolic process;0.0355186119368641!GO:0033013;tetrapyrrole metabolic process;0.0355186119368641!GO:0031497;chromatin assembly;0.0356292346981509!GO:0003756;protein disulfide isomerase activity;0.0362966855960069!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0362966855960069!GO:0022884;macromolecule transmembrane transporter activity;0.0362966855960069!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0362966855960069!GO:0032984;macromolecular complex disassembly;0.0365784536448946!GO:0004003;ATP-dependent DNA helicase activity;0.0365854769495941!GO:0016408;C-acyltransferase activity;0.0370448463876538!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0372476978629344!GO:0031371;ubiquitin conjugating enzyme complex;0.0374038651338588!GO:0019783;small conjugating protein-specific protease activity;0.0376107574133353!GO:0032507;maintenance of cellular protein localization;0.0380104664716212!GO:0000086;G2/M transition of mitotic cell cycle;0.0385227621383804!GO:0000792;heterochromatin;0.0386740138657158!GO:0000781;chromosome, telomeric region;0.039079234722577!GO:0005765;lysosomal membrane;0.0396816054881095!GO:0000726;non-recombinational repair;0.0400684291309417!GO:0008538;proteasome activator activity;0.0411918717585973!GO:0006360;transcription from RNA polymerase I promoter;0.0411936912770277!GO:0004843;ubiquitin-specific protease activity;0.0423066650294425!GO:0022415;viral reproductive process;0.0428236886773014!GO:0015036;disulfide oxidoreductase activity;0.0430215285151653!GO:0000030;mannosyltransferase activity;0.0434938163834089!GO:0006520;amino acid metabolic process;0.0435473693871054!GO:0006144;purine base metabolic process;0.0436128886579786!GO:0006897;endocytosis;0.0447296814478036!GO:0010324;membrane invagination;0.0447296814478036!GO:0000178;exosome (RNase complex);0.0448204509746677!GO:0016584;nucleosome positioning;0.0452175854685706!GO:0006220;pyrimidine nucleotide metabolic process;0.0452872898820063!GO:0000123;histone acetyltransferase complex;0.0453975241100933!GO:0051053;negative regulation of DNA metabolic process;0.0458592821946114!GO:0012506;vesicle membrane;0.0459014820223604!GO:0042026;protein refolding;0.0461152216418109!GO:0007041;lysosomal transport;0.0461152216418109!GO:0043189;H4/H2A histone acetyltransferase complex;0.0466102056565109!GO:0007030;Golgi organization and biogenesis;0.0468110108796434!GO:0005875;microtubule associated complex;0.0470087214036855!GO:0019752;carboxylic acid metabolic process;0.0472541070753405!GO:0032259;methylation;0.0473640623500257!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0475810061821211!GO:0005938;cell cortex;0.04758187188393!GO:0008287;protein serine/threonine phosphatase complex;0.0477463100592073!GO:0050662;coenzyme binding;0.048399925326905!GO:0005586;collagen type III;0.0494811787982409!GO:0009112;nucleobase metabolic process;0.0495207666207388
|sample_id=10413
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brain
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58007627964;bHLH_family:1.0245002728;HSF1,2:0.98668410731;GZF1:0.969708444572;RXR{A,B,G}:0.950545164449;PAX4:0.950043194185;NFY{A,B,C}:0.925198241649;NFIX:0.916060504273;TOPORS:0.894700061811;EN1,2:0.888695275885;ELK1,4_GABP{A,B1}:0.816457901734;HOX{A5,B5}:0.805087433072;GFI1:0.77300668311;ZNF143:0.764453805036;AHR_ARNT_ARNT2:0.745794212975;POU6F1:0.729276163404;NRF1:0.727298545332;NKX6-1,2:0.713151823803;SOX17:0.688655480606;ZNF384:0.686265039629;TLX1..3_NFIC{dimer}:0.667475965097;E2F1..5:0.662852068764;SREBF1,2:0.651503681943;LHX3,4:0.646293663262;PITX1..3:0.605904338514;HAND1,2:0.596920708146;YY1:0.595299606675;HBP1_HMGB_SSRP1_UBTF:0.547419759469;ONECUT1,2:0.544492898778;FOXD3:0.51933656157;MAFB:0.51883395245;SOX2:0.501840395131;MZF1:0.497420431007;CREB1:0.490108697806;TFAP2B:0.488199906361;PAX1,9:0.481984182363;ARID5B:0.465661544148;HOXA9_MEIS1:0.439624268464;ZNF238:0.434063503051;PAX5:0.420261914333;PATZ1:0.41701982452;GATA4:0.401627251044;MAZ:0.397132225566;NKX3-1:0.385457196025;TBX4,5:0.384289571744;ZIC1..3:0.382448289523;GTF2I:0.380741135759;CUX2:0.376503498031;RFX1:0.358560552091;CDX1,2,4:0.350221175991;BACH2:0.339667307541;EVI1:0.335372184469;PDX1:0.334749235719;FOXQ1:0.33388114755;HLF:0.326181410544;VSX1,2:0.311690074614;CRX:0.263613872059;NR3C1:0.262198060775;AIRE:0.246052179192;NKX3-2:0.245912893796;PRRX1,2:0.242659836474;FOSL2:0.236436800513;MYB:0.23110905671;ZBTB6:0.221108069004;TEAD1:0.220359003191;MYFfamily:0.213002090245;RXRA_VDR{dimer}:0.209904076476;SMAD1..7,9:0.193855771291;RREB1:0.188066316076;HMGA1,2:0.185888185898;ESRRA:0.179268866712;POU1F1:0.170926533243;PRDM1:0.166067128188;NFE2:0.15255570889;ATF5_CREB3:0.148423442099;TFDP1:0.141789519399;FOXM1:0.135436829818;CDC5L:0.13442594119;ZFP161:0.13337972705;IKZF1:0.124762129803;ATF4:0.121392832514;NFE2L2:0.107207554451;BREu{core}:0.106549093166;PBX1:0.102648566031;SRF:0.100417585297;FOXP1:0.0798910084014;NR1H4:0.0700637140046;GATA6:0.0447883013118;RUNX1..3:0.042386864958;RFX2..5_RFXANK_RFXAP:0.0394430392694;ADNP_IRX_SIX_ZHX:0.0321282420821;GTF2A1,2:0.0318972350478;ZBTB16:0.0205299782694;MYBL2:0.0184974884228;TAL1_TCF{3,4,12}:0.00603272583401;TFAP4:0.000983451711223;ELF1,2,4:-0.00432009623008;JUN:-0.00521766625633;FOXP3:-0.00684510962584;XCPE1{core}:-0.0112403589558;NFIL3:-0.012812236273;TFAP2{A,C}:-0.0139533864022;CEBPA,B_DDIT3:-0.0178645412669;ZNF423:-0.0314419968191;MEF2{A,B,C,D}:-0.0342871516294;HNF1A:-0.038699384317;FOS_FOS{B,L1}_JUN{B,D}:-0.0420183105488;NFATC1..3:-0.0456956509363;T:-0.0509256805424;RORA:-0.0688000548516;LEF1_TCF7_TCF7L1,2:-0.0709056463336;PAX3,7:-0.0722871261496;UFEwm:-0.0989744540969;SOX{8,9,10}:-0.103651001901;TFCP2:-0.124543061422;HOX{A4,D4}:-0.134188242395;FOXA2:-0.13459399137;RBPJ:-0.16393611846;BPTF:-0.167573075151;IRF7:-0.167689280215;XBP1:-0.170496946759;HIF1A:-0.17833333396;KLF4:-0.183281465236;PAX8:-0.19005012972;HMX1:-0.194356001153;EGR1..3:-0.196184150185;GFI1B:-0.19798994927;HNF4A_NR2F1,2:-0.200243599203;SPZ1:-0.2077305145;TEF:-0.209787517049;EBF1:-0.215154811895;REST:-0.224233838622;NKX2-1,4:-0.228075986111;ATF6:-0.242861728094;ESR1:-0.257454542566;STAT1,3:-0.265151763441;NFE2L1:-0.269114653176;PAX2:-0.269269210921;TLX2:-0.276824002438;SP1:-0.278680281164;FOX{D1,D2}:-0.288482046116;MTE{core}:-0.289391867744;HIC1:-0.29130475141;FOX{F1,F2,J1}:-0.295899880164;IRF1,2:-0.297953333918;NFKB1_REL_RELA:-0.30011905656;FOXN1:-0.333769556393;OCT4_SOX2{dimer}:-0.340122330841;NR6A1:-0.353794605741;DMAP1_NCOR{1,2}_SMARC:-0.368344861539;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368581955843;NANOG:-0.383464678935;TBP:-0.389859114665;TP53:-0.394225537118;NKX2-2,8:-0.401092842561;LMO2:-0.413752167933;MED-1{core}:-0.413826303726;IKZF2:-0.414832854124;NHLH1,2:-0.433177502141;POU3F1..4:-0.434686071893;ALX4:-0.450440230321;DBP:-0.47061368742;NKX2-3_NKX2-5:-0.473391289221;SPIB:-0.475917478212;MYOD1:-0.482323075736;ATF2:-0.500062483376;FOX{I1,J2}:-0.502454011631;SPI1:-0.511480773203;STAT2,4,6:-0.515076050892;MTF1:-0.544979712573;HES1:-0.555232278736;POU5F1:-0.580808599796;NR5A1,2:-0.586776988024;ETS1,2:-0.608717993869;SNAI1..3:-0.615990193532;ZNF148:-0.640720897951;GLI1..3:-0.642864268572;GCM1,2:-0.647258276763;SOX5:-0.665294915975;PPARG:-0.704722763059;ALX1:-0.725924127972;ZEB1:-0.763655843157;EP300:-0.766746252279;NANOG{mouse}:-0.7882971492;AR:-0.789989173971;TGIF1:-0.860504568575;FOXO1,3,4:-0.909853091812;STAT5{A,B}:-0.94267440659;HOX{A6,A7,B6,B7}:-0.962443477229;PAX6:-1.23341566523;POU2F1..3:-1.5675776398;FOXL1:-1.62787901201
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10413-106B8;search_select_hide=table117:FF:10413-106B8
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:glioma cell line:GI-1
Species:Human (Homo sapiens)
Library ID:CNhs10731
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage61 year old adult
sexmale
age61
cell typeglioblast
cell lineGI-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005418
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10731 CAGE DRX007900 DRR008772
Accession ID Hg19

Library idBAMCTSS
CNhs10731 DRZ000197 DRZ001582
Accession ID Hg38

Library idBAMCTSS
CNhs10731 DRZ011547 DRZ012932
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.332
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0228
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.11
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.213
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.261
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.231
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.165
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.11
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.11
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.198
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.11
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.271
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.11
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.111
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10731

Jaspar motifP-value
MA0002.20.281
MA0003.10.244
MA0004.10.113
MA0006.10.411
MA0007.10.0122
MA0009.10.188
MA0014.10.605
MA0017.10.0738
MA0018.20.747
MA0019.10.141
MA0024.10.00938
MA0025.10.679
MA0027.10.483
MA0028.18.30508e-4
MA0029.10.478
MA0030.10.685
MA0031.10.383
MA0035.20.646
MA0038.10.00531
MA0039.20.0206
MA0040.10.595
MA0041.10.293
MA0042.10.763
MA0043.10.0674
MA0046.10.311
MA0047.20.716
MA0048.10.048
MA0050.10.28
MA0051.10.209
MA0052.10.169
MA0055.10.311
MA0057.10.422
MA0058.10.0063
MA0059.10.553
MA0060.16.57458e-8
MA0061.10.00213
MA0062.20.0139
MA0065.20.127
MA0066.10.327
MA0067.10.689
MA0068.10.0225
MA0069.10.574
MA0070.10.00162
MA0071.10.773
MA0072.10.957
MA0073.10.768
MA0074.10.634
MA0076.12.42947e-4
MA0077.10.837
MA0078.10.436
MA0079.20.958
MA0080.21.37652e-13
MA0081.10.0323
MA0083.10.147
MA0084.10.763
MA0087.10.292
MA0088.10.648
MA0090.10.473
MA0091.10.303
MA0092.10.0761
MA0093.10.0317
MA0099.21.58421e-5
MA0100.10.305
MA0101.10.0861
MA0102.20.05
MA0103.10.00151
MA0104.20.199
MA0105.10.0016
MA0106.10.598
MA0107.10.024
MA0108.20.019
MA0111.10.563
MA0112.25.44259e-4
MA0113.10.687
MA0114.10.501
MA0115.10.197
MA0116.10.00764
MA0117.10.74
MA0119.10.817
MA0122.10.59
MA0124.10.0788
MA0125.10.657
MA0131.10.846
MA0135.10.528
MA0136.11.34134e-10
MA0137.20.016
MA0138.20.0374
MA0139.10.87
MA0140.10.445
MA0141.10.215
MA0142.10.0332
MA0143.10.876
MA0144.19.42131e-4
MA0145.10.381
MA0146.10.532
MA0147.10.488
MA0148.10.455
MA0149.10.732
MA0150.10.341
MA0152.10.683
MA0153.10.518
MA0154.10.012
MA0155.10.307
MA0156.10.00244
MA0157.10.0932
MA0159.10.0859
MA0160.10.262
MA0162.10.254
MA0163.10.0887
MA0164.10.353
MA0258.10.0377
MA0259.10.843



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10731

Novel motifP-value
10.453
100.74
1000.965
1010.623
1020.624
1030.252
1040.394
1050.634
1062.36851e-4
1070.193
1080.497
1090.109
110.312
1100.589
1110.588
1120.0645
1130.071
1140.0179
1150.631
1160.805
1170.389
1180.906
1190.0399
120.312
1200.799
1210.929
1220.169
1230.396
1240.925
1250.401
1260.217
1270.66
1280.0139
1290.0148
130.894
1300.148
1310.369
1320.207
1330.0874
1340.988
1350.134
1360.351
1370.534
1380.167
1390.0595
140.997
1400.977
1410.351
1420.997
1430.0112
1440.891
1450.219
1460.564
1470.858
1480.0898
1490.18
150.294
1500.562
1510.551
1520.138
1530.997
1540.808
1550.668
1560.739
1570.712
1580.316
1590.614
160.263
1600.124
1610.214
1620.492
1630.956
1640.417
1650.0136
1660.753
1670.248
1680.933
1690.209
170.492
180.75
190.237
20.441
200.811
210.883
220.435
230.0164
240.99
250.128
260.33
270.211
280.897
290.985
30.714
300.67
310.224
320.153
330.432
340.418
350.803
360.102
370.706
380.125
390.429
40.905
400.139
410.0509
420.879
430.104
440.191
450.352
460.217
470.995
480.331
490.188
50.37
500.878
510.817
520.0776
530.757
540.616
550.945
560.882
570.715
580.0648
590.0436
60.348
600.0263
610.857
620.00157
630.236
640.901
650.0209
660.0555
670.84
680.832
690.442
70.229
700.02
710.691
720.576
730.383
740.66
750.923
760.853
770.486
780.0709
790.368
80.383
800.528
810.631
820.0193
830.852
840.704
850.115
860.91
870.338
880.78
890.0608
90.665
900.327
910.364
920.0759
930.205
940.143
950.439
960.198
970.234
980.0136
990.909



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10731


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

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