FF:10436-106E4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005478 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |HumanCAGEScanFiles=NCig10057;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008002;DRR008874;DRZ000299;DRZ001684;DRZ011649;DRZ013034 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:3493 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:3493 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100787,FF:0101092 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!266.38!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.19!154.88!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.72!518.04!KLF5;;chr1:201979743..201979762,+!p1@ELF3!1.72!51.23!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.58!36.90!EHF;;chr21:36421535..36421610,-!p2@RUNX1!1.52!110.52!RUNX1;;chr11:34642656..34642667,+!p2@EHF!1.51!31.60!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.31!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!1.50!304.17!SOX9;;chr7:63505799..63505904,+!p1@ZNF727!1.47!28.27!ZNF727;;chr17:46675558..46675577,-!p2@HOXB6!1.42!25.42!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.40!27.87!PPARG;;chr6:106546808..106546833,+!p3@PRDM1!1.38!28.86!PRDM1;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.32!IRF6;;chr17:46622440..46622477,-!p5@HOXB2!1.33!22.87!HOXB2;;chr19:50432453..50432468,+!p1@ATF5!1.28!982.19!ATF5;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.75!PROX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.78!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.59!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.23!16.10!HNF4A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.43!HOXC10;;chr11:2292226..2292270,-!p1@ASCL2!1.18!14.13!ASCL2;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.10!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.96!HOXB3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.96!SOX2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.56!HOXB6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.13!12.37!ZNF676;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.81!C11orf9;;chr18:45663490..45663528,-!p2@ZBTB7C!1.12!12.27!ZBTB7C;;chr17:41623692..41623715,-!p1@ETV4!1.11!50.35!ETV4;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.37!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.29!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.56!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.60!HOXC10;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.51!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr8:76319876..76319926,+!p1@HNF4G!1.05!10.21!HNF4G;;chr11:34535297..34535317,-!p1@ELF5!1.05!10.21!ELF5;;chr17:46667628..46667642,-!p2@HOXB3!1.02!9.52!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.52!TFCP2L1;;chr5:174151612..174151633,+!p2@MSX2!1.01!9.32!MSX2;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.23!HOXC9;;chr3:181429741..181429767,+!p2@SOX2!1.01!9.13!SOX2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.88!E2F2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.40!HOXB2;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.83!GATA4;;chr20:22564895..22564910,-!p1@FOXA2!0.99!8.74!FOXA2;;chr12:52445218..52445237,+!p1@NR4A1!0.98!111.79!NR4A1;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.64!ZNF208;;chr3:32023232..32023273,+!p1@ZNF860!0.97!12.07!ZNF860;;chr20:18038521..18038571,-!p1@OVOL2!0.97!8.24!OVOL2;;chr9:110252035..110252057,-!p1@KLF4!0.96!134.27!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.84!MSX2;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.68!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.95!7.85!MNX1;;chr6:126102292..126102329,+!p3@NCOA7!0.94!26.50!NCOA7;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.36!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.36!IRF8;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.16!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!6.97!HOXC5;;chr6:36355431..36355466,-!p1@ETV7!0.89!6.67!ETV7;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.80!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.87!6.48!HOXC11;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.48!PRDM1;;chr11:34535332..34535347,-!p2@ELF5!0.87!6.38!ELF5;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.38!SIM2;;chr17:46622229..46622257,-!p6@HOXB2!0.86!7.46!HOXB2;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.28!PRDM16;;chr18:19749541..19749557,+!p1@GATA6!0.85!20.22!GATA6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.26!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.89!E2F7;;chr6:31126291..31126399,+!p1@TCF19!0.84!59.58!TCF19;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chr14:75988771..75988826,+!p1@BATF!0.83!7.95!BATF;;chr13:73636516..73636532,+!p3@KLF5!0.83!6.58!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.83!5.79!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.59!HOXC10;;chr18:56532100..56532130,+!p1@ZNF532!0.81!10.60!ZNF532;;chr12:54367122..54367144,+!p4@HOXC11!0.81!5.50!HOXC11;;chr12:2986275..2986363,-!p1@FOXM1!0.80!57.32!FOXM1;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.48!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.09!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.79!60.85!AHR;;chr6:36355513..36355578,-!p2@ETV7!0.79!6.58!ETV7;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr13:28494130..28494168,+!p1@PDX1!0.79!5.20!PDX1;;chr12:80084737..80084763,-!p3@PAWR!0.78!20.32!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.77!196.30!DDIT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.63!TCF7L2;;chr11:64764435..64764449,-!p1@BATF2!0.77!6.97!BATF2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr22:38597987..38598021,+!p2@MAFF!0.76!31.90!MAFF;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.75!BRCA1;;chr12:54366975..54367001,+!p1@HOXC11!0.76!4.71!HOXC11;;chr17:46622070..46622109,-!p1@HOXB2!0.75!10.99!HOXB2;;chr19:50435736..50435781,+!p3@ATF5!0.75!6.67!ATF5;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.61!KLF5;;chr17:46675469..46675481,-!p4@HOXB6!0.75!4.61!HOXB6;;chr22:42229246..42229270,+!p2@SREBF2!0.74!62.72!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.74!18.06!HES6;;chr20:18037473..18037494,-!p3@OVOL2!0.74!4.51!OVOL2;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.51!PRDM1;;chr3:185826855..185826911,-!p1@ETV5!0.73!134.37!ETV5;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.35!FOXM1;;chr7:17338324..17338341,+!p3@AHR!0.73!16.10!AHR;;chr6:1312155..1312187,+!p2@FOXQ1!0.73!4.42!FOXQ1;;chr1:10856694..10856715,-!p3@CASZ1!0.73!4.42!CASZ1;;chr1:209979411..209979433,-!p2@IRF6!0.73!4.42!IRF6;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.32!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.73!4.32!YBX2;;chr6:126102254..126102289,+!p5@NCOA7!0.72!12.76!NCOA7;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.47!HOXB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.22!TFAP2A;;chr6:87923426..87923456,+!p13@ZNF292!0.72!4.22!ZNF292;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr17:46675539..46675551,-!p7@HOXB6!0.69!3.93!HOXB6;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.38!ELF1;;chr14:38064429..38064486,-!p1@FOXA1!0.68!3.83!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!0.68!3.83!FOXA3;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.83!TFAP2A;;chr17:46703942..46703964,-!p4@HOXB9!0.67!3.73!HOXB9;;chr11:34643638..34643667,+!p8@EHF!0.67!3.73!EHF;;chr12:54379136..54379150,+!p4@HOXC5!0.67!3.73!HOXC5;;chr12:54379029..54379057,+!p2@HOXC10!0.67!3.63!HOXC10;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.63!HOXB13;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.63!CASZ1;;chr2:171571931..171571959,+!p3@SP5!0.67!3.63!SP5;;chr17:46675619..46675642,-!p5@HOXB6!0.66!3.53!HOXB6;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.53!NFIX;;chr12:54366949..54366973,+!p3@HOXC11!0.66!3.53!HOXC11;;chr6:106534230..106534254,+!p2@PRDM1!0.65!9.72!PRDM1;;chr1:43148855..43148908,+!p4@YBX1!0.65!5.79!YBX1;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.69!HOXB2;;chr12:66218003..66218018,+!p9@HMGA2!0.65!4.42!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!260.20!TSC22D1;;chr7:148581327..148581347,-!p2@EZH2!0.64!12.96!EZH2;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.74!SREBF2;;chr3:14058794..14058815,+!p1@TPRXL!0.64!3.34!TPRXL;;chr13:27998831..27998851,+!p2@GTF3A!0.63!22.77!GTF3A;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.75!PBX4;;chr1:10754477..10754517,-!p1@CASZ1!0.63!5.89!CASZ1;;chr8:41508327..41508355,-!p1@NKX6-3!0.63!3.24!NKX6-3;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.82!ZBTB38;;chr19:21203481..21203504,+!p2@ZNF430!0.62!8.34!ZNF430;;chr1:2985726..2985752,+!p2@PRDM16!0.62!3.14!PRDM16;;chr11:2291814..2291825,-!p2@ASCL2!0.62!3.14!ASCL2;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.14!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!0.61!111.60!HMGA1;;chr3:141087339..141087387,+!p2@ZBTB38!0.61!37.89!ZBTB38;;chr9:99180617..99180658,-!p1@ZNF367!0.61!7.66!ZNF367;;chr17:79885633..79885645,-!p4@MAFG!0.61!5.59!MAFG;;chr9:110250697..110250738,-!p2@KLF4!0.61!3.73!KLF4;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.73!E2F8;;chr13:45009301..45009320,-!p7@TSC22D1!0.61!3.04!TSC22D1;;chr17:46132044..46132080,+!p4@NFE2L1!0.61!3.04!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.04!HOXB7;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:151804244..151804310,-!p1@RORC!0.60!2.94!RORC;;chr5:131826457..131826514,-!p1@IRF1!0.59!139.57!IRF1;;chr7:148581360..148581425,-!p1@EZH2!0.59!17.18!EZH2;;chr1:158985493..158985535,+!p4@IFI16!0.59!4.81!IFI16;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.85!PAX9;;chr5:133450458..133450469,+!p4@TCF7!0.59!2.85!TCF7;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.48!E2F1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.58!18.16!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!0.58!9.13!PRDM1;;chr17:79885537..79885554,-!p2@MAFG!0.58!5.99!MAFG;;chr20:32274150..32274166,-!p2@E2F1!0.58!5.79!E2F1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.20!ZNF492;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.02!TEAD4;;chr5:76383070..76383117,-!p3@ZBED3!0.57!6.18!ZBED3;;chr17:38020392..38020477,-!p1@IKZF3!0.57!2.75!IKZF3;;chr6:34204672..34204692,+!p1@HMGA1!0.56!373.27!HMGA1;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.41!ZNF385A;;chr5:133450365..133450444,+!p1@TCF7!0.56!14.72!TCF7;;chr1:23857325..23857416,-!p2@E2F2!0.56!3.24!E2F2;;chr20:22565370..22565388,-!p2@FOXA2!0.56!2.65!FOXA2;;chr7:57509877..57509895,+!p1@ZNF716!0.56!2.65!ZNF716;;chr3:12329397..12329433,+!p2@PPARG!0.55!6.67!PPARG;;chr3:185784049..185784050,-!p7@ETV5!0.55!2.55!ETV5;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.84!KLF3;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.78!PCBP4;;chrX:46404811..46404869,-!p1@ZNF674!0.54!11.09!ZNF674;;chr2:46524897..46524911,+!p2@EPAS1!0.54!8.24!EPAS1;;chr5:76383133..76383186,-!p2@ZBED3!0.54!5.89!ZBED3;;chr19:22235279..22235301,+!p1@ZNF257!0.54!5.3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| |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!266.38!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.19!154.88!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.72!518.04!KLF5;;chr1:201979743..201979762,+!p1@ELF3!1.72!51.23!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.58!36.90!EHF;;chr21:36421535..36421610,-!p2@RUNX1!1.52!110.52!RUNX1;;chr11:34642656..34642667,+!p2@EHF!1.51!31.60!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.31!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!1.50!304.17!SOX9;;chr7:63505799..63505904,+!p1@ZNF727!1.47!28.27!ZNF727;;chr17:46675558..46675577,-!p2@HOXB6!1.42!25.42!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.40!27.87!PPARG;;chr6:106546808..106546833,+!p3@PRDM1!1.38!28.86!PRDM1;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.32!IRF6;;chr17:46622440..46622477,-!p5@HOXB2!1.33!22.87!HOXB2;;chr19:50432453..50432468,+!p1@ATF5!1.28!982.19!ATF5;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.75!PROX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.78!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.59!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.23!16.10!HNF4A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.43!HOXC10;;chr11:2292226..2292270,-!p1@ASCL2!1.18!14.13!ASCL2;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.10!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.96!HOXB3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.96!SOX2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.56!HOXB6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.13!12.37!ZNF676;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.81!C11orf9;;chr18:45663490..45663528,-!p2@ZBTB7C!1.12!12.27!ZBTB7C;;chr17:41623692..41623715,-!p1@ETV4!1.11!50.35!ETV4;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.37!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.29!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.56!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.60!HOXC10;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.51!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr8:76319876..76319926,+!p1@HNF4G!1.05!10.21!HNF4G;;chr11:34535297..34535317,-!p1@ELF5!1.05!10.21!ELF5;;chr17:46667628..46667642,-!p2@HOXB3!1.02!9.52!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.52!TFCP2L1;;chr5:174151612..174151633,+!p2@MSX2!1.01!9.32!MSX2;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.23!HOXC9;;chr3:181429741..181429767,+!p2@SOX2!1.01!9.13!SOX2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.88!E2F2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.40!HOXB2;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.83!GATA4;;chr20:22564895..22564910,-!p1@FOXA2!0.99!8.74!FOXA2;;chr12:52445218..52445237,+!p1@NR4A1!0.98!111.79!NR4A1;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.64!ZNF208;;chr3:32023232..32023273,+!p1@ZNF860!0.97!12.07!ZNF860;;chr20:18038521..18038571,-!p1@OVOL2!0.97!8.24!OVOL2;;chr9:110252035..110252057,-!p1@KLF4!0.96!134.27!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.84!MSX2;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.68!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.95!7.85!MNX1;;chr6:126102292..126102329,+!p3@NCOA7!0.94!26.50!NCOA7;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.36!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.36!IRF8;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.16!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!6.97!HOXC5;;chr6:36355431..36355466,-!p1@ETV7!0.89!6.67!ETV7;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.80!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.87!6.48!HOXC11;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.48!PRDM1;;chr11:34535332..34535347,-!p2@ELF5!0.87!6.38!ELF5;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.38!SIM2;;chr17:46622229..46622257,-!p6@HOXB2!0.86!7.46!HOXB2;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.28!PRDM16;;chr18:19749541..19749557,+!p1@GATA6!0.85!20.22!GATA6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.26!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.89!E2F7;;chr6:31126291..31126399,+!p1@TCF19!0.84!59.58!TCF19;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chr14:75988771..75988826,+!p1@BATF!0.83!7.95!BATF;;chr13:73636516..73636532,+!p3@KLF5!0.83!6.58!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.83!5.79!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.59!HOXC10;;chr18:56532100..56532130,+!p1@ZNF532!0.81!10.60!ZNF532;;chr12:54367122..54367144,+!p4@HOXC11!0.81!5.50!HOXC11;;chr12:2986275..2986363,-!p1@FOXM1!0.80!57.32!FOXM1;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.48!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.09!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.79!60.85!AHR;;chr6:36355513..36355578,-!p2@ETV7!0.79!6.58!ETV7;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr13:28494130..28494168,+!p1@PDX1!0.79!5.20!PDX1;;chr12:80084737..80084763,-!p3@PAWR!0.78!20.32!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.77!196.30!DDIT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.63!TCF7L2;;chr11:64764435..64764449,-!p1@BATF2!0.77!6.97!BATF2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr22:38597987..38598021,+!p2@MAFF!0.76!31.90!MAFF;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.75!BRCA1;;chr12:54366975..54367001,+!p1@HOXC11!0.76!4.71!HOXC11;;chr17:46622070..46622109,-!p1@HOXB2!0.75!10.99!HOXB2;;chr19:50435736..50435781,+!p3@ATF5!0.75!6.67!ATF5;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.61!KLF5;;chr17:46675469..46675481,-!p4@HOXB6!0.75!4.61!HOXB6;;chr22:42229246..42229270,+!p2@SREBF2!0.74!62.72!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.74!18.06!HES6;;chr20:18037473..18037494,-!p3@OVOL2!0.74!4.51!OVOL2;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.51!PRDM1;;chr3:185826855..185826911,-!p1@ETV5!0.73!134.37!ETV5;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.35!FOXM1;;chr7:17338324..17338341,+!p3@AHR!0.73!16.10!AHR;;chr6:1312155..1312187,+!p2@FOXQ1!0.73!4.42!FOXQ1;;chr1:10856694..10856715,-!p3@CASZ1!0.73!4.42!CASZ1;;chr1:209979411..209979433,-!p2@IRF6!0.73!4.42!IRF6;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.32!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.73!4.32!YBX2;;chr6:126102254..126102289,+!p5@NCOA7!0.72!12.76!NCOA7;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.47!HOXB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.22!TFAP2A;;chr6:87923426..87923456,+!p13@ZNF292!0.72!4.22!ZNF292;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr17:46675539..46675551,-!p7@HOXB6!0.69!3.93!HOXB6;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.38!ELF1;;chr14:38064429..38064486,-!p1@FOXA1!0.68!3.83!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!0.68!3.83!FOXA3;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.83!TFAP2A;;chr17:46703942..46703964,-!p4@HOXB9!0.67!3.73!HOXB9;;chr11:34643638..34643667,+!p8@EHF!0.67!3.73!EHF;;chr12:54379136..54379150,+!p4@HOXC5!0.67!3.73!HOXC5;;chr12:54379029..54379057,+!p2@HOXC10!0.67!3.63!HOXC10;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.63!HOXB13;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.63!CASZ1;;chr2:171571931..171571959,+!p3@SP5!0.67!3.63!SP5;;chr17:46675619..46675642,-!p5@HOXB6!0.66!3.53!HOXB6;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.53!NFIX;;chr12:54366949..54366973,+!p3@HOXC11!0.66!3.53!HOXC11;;chr6:106534230..106534254,+!p2@PRDM1!0.65!9.72!PRDM1;;chr1:43148855..43148908,+!p4@YBX1!0.65!5.79!YBX1;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.69!HOXB2;;chr12:66218003..66218018,+!p9@HMGA2!0.65!4.42!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!260.20!TSC22D1;;chr7:148581327..148581347,-!p2@EZH2!0.64!12.96!EZH2;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.74!SREBF2;;chr3:14058794..14058815,+!p1@TPRXL!0.64!3.34!TPRXL;;chr13:27998831..27998851,+!p2@GTF3A!0.63!22.77!GTF3A;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.75!PBX4;;chr1:10754477..10754517,-!p1@CASZ1!0.63!5.89!CASZ1;;chr8:41508327..41508355,-!p1@NKX6-3!0.63!3.24!NKX6-3;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.82!ZBTB38;;chr19:21203481..21203504,+!p2@ZNF430!0.62!8.34!ZNF430;;chr1:2985726..2985752,+!p2@PRDM16!0.62!3.14!PRDM16;;chr11:2291814..2291825,-!p2@ASCL2!0.62!3.14!ASCL2;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.14!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!0.61!111.60!HMGA1;;chr3:141087339..141087387,+!p2@ZBTB38!0.61!37.89!ZBTB38;;chr9:99180617..99180658,-!p1@ZNF367!0.61!7.66!ZNF367;;chr17:79885633..79885645,-!p4@MAFG!0.61!5.59!MAFG;;chr9:110250697..110250738,-!p2@KLF4!0.61!3.73!KLF4;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.73!E2F8;;chr13:45009301..45009320,-!p7@TSC22D1!0.61!3.04!TSC22D1;;chr17:46132044..46132080,+!p4@NFE2L1!0.61!3.04!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.04!HOXB7;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:151804244..151804310,-!p1@RORC!0.60!2.94!RORC;;chr5:131826457..131826514,-!p1@IRF1!0.59!139.57!IRF1;;chr7:148581360..148581425,-!p1@EZH2!0.59!17.18!EZH2;;chr1:158985493..158985535,+!p4@IFI16!0.59!4.81!IFI16;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.85!PAX9;;chr5:133450458..133450469,+!p4@TCF7!0.59!2.85!TCF7;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.48!E2F1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.58!18.16!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!0.58!9.13!PRDM1;;chr17:79885537..79885554,-!p2@MAFG!0.58!5.99!MAFG;;chr20:32274150..32274166,-!p2@E2F1!0.58!5.79!E2F1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.20!ZNF492;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.02!TEAD4;;chr5:76383070..76383117,-!p3@ZBED3!0.57!6.18!ZBED3;;chr17:38020392..38020477,-!p1@IKZF3!0.57!2.75!IKZF3;;chr6:34204672..34204692,+!p1@HMGA1!0.56!373.27!HMGA1;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.41!ZNF385A;;chr5:133450365..133450444,+!p1@TCF7!0.56!14.72!TCF7;;chr1:23857325..23857416,-!p2@E2F2!0.56!3.24!E2F2;;chr20:22565370..22565388,-!p2@FOXA2!0.56!2.65!FOXA2;;chr7:57509877..57509895,+!p1@ZNF716!0.56!2.65!ZNF716;;chr3:12329397..12329433,+!p2@PPARG!0.55!6.67!PPARG;;chr3:185784049..185784050,-!p7@ETV5!0.55!2.55!ETV5;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.84!KLF3;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.78!PCBP4;;chrX:46404811..46404869,-!p1@ZNF674!0.54!11.09!ZNF674;;chr2:46524897..46524911,+!p2@EPAS1!0.54!8.24!EPAS1;;chr5:76383133..76383186,-!p2@ZBED3!0.54!5.89!ZBED3;;chr19:22235279..22235301,+!p1@ZNF257!0.54!5.3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| ||
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0100787,FF:0101120 | |fonse_cell_line=FF:0100787,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100787,FF:0101120 | |fonse_cell_line_closure=FF:0100787,FF:0101120 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10436-106E4 | |id=FF:10436-106E4 | ||
|is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0101092 | |is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0101092 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10753 | |||
|library_id_phase_based=2:CNhs10753 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10436 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10436 | |||
|name=signet ring carcinoma cell line:Kato III | |name=signet ring carcinoma cell line:Kato III | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=NCig10057,,, | |profile_cagescan=NCig10057,,, | ||
|profile_hcage=CNhs10753,LSID692,release008,COMPLETED | |profile_hcage=CNhs10753,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.020330879149429,0,0,0,0,-0.0164913478271008,0.112085514980729,-0.234171539907232,-0.262072681427513,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.11266125204957,0,0,0,0.020330879149429,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.12019705332141,0,0,0,0,0,0,0,0,0.65336596382005,0,0,0,0,0,-0.0810027456015433,0,-0.0969923612426051,0,0,-0.0195033548587919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.195408352872938,0.0867025791544045,0,0,-0.0584468268118252,0.0222714718670672,0,0,0.020330879149429,0,-0.0573735929388484,-0.118146321651466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232499804584635,0,0,0,-0.125576014121094,-0.187850707253185,0,0,0,0,0,0.0406617582988581 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 55: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+06 | ||
|rna_weight_ug=21.48075 | |rna_weight_ug=21.48075 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2088 | |sample_cell_catalog=RCB2088 | ||
|sample_cell_line=Kato III | |sample_cell_line=Kato III | ||
| Line 79: | Line 101: | ||
|top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336 | |top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10436-106E4;search_select_hide=table117:FF:10436-106E4 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | signet ring carcinoma cell line:Kato III |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10753 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10753
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10753
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.148 |
| 10 | 10 | 0.29 |
| 100 | 100 | 0.534 |
| 101 | 101 | 0.777 |
| 102 | 102 | 0.285 |
| 103 | 103 | 0.903 |
| 104 | 104 | 0.757 |
| 105 | 105 | 0.219 |
| 106 | 106 | 0.343 |
| 107 | 107 | 0.669 |
| 108 | 108 | 0.773 |
| 109 | 109 | 0.0124 |
| 11 | 11 | 0.343 |
| 110 | 110 | 0.152 |
| 111 | 111 | 0.935 |
| 112 | 112 | 0.943 |
| 113 | 113 | 0.257 |
| 114 | 114 | 0.755 |
| 115 | 115 | 0.794 |
| 116 | 116 | 0.289 |
| 117 | 117 | 0.107 |
| 118 | 118 | 0.332 |
| 119 | 119 | 0.195 |
| 12 | 12 | 0.149 |
| 120 | 120 | 0.467 |
| 121 | 121 | 0.667 |
| 122 | 122 | 0.0899 |
| 123 | 123 | 0.175 |
| 124 | 124 | 0.471 |
| 125 | 125 | 0.955 |
| 126 | 126 | 0.248 |
| 127 | 127 | 0.561 |
| 128 | 128 | 0.757 |
| 129 | 129 | 0.052 |
| 13 | 13 | 0.00268 |
| 130 | 130 | 0.681 |
| 131 | 131 | 0.127 |
| 132 | 132 | 0.972 |
| 133 | 133 | 0.0844 |
| 134 | 134 | 0.433 |
| 135 | 135 | 0.0352 |
| 136 | 136 | 0.443 |
| 137 | 137 | 0.872 |
| 138 | 138 | 0.614 |
| 139 | 139 | 0.32 |
| 14 | 14 | 0.721 |
| 140 | 140 | 0.228 |
| 141 | 141 | 0.391 |
| 142 | 142 | 0.118 |
| 143 | 143 | 0.379 |
| 144 | 144 | 0.0947 |
| 145 | 145 | 0.985 |
| 146 | 146 | 0.36 |
| 147 | 147 | 0.783 |
| 148 | 148 | 0.286 |
| 149 | 149 | 0.876 |
| 15 | 15 | 0.169 |
| 150 | 150 | 0.38 |
| 151 | 151 | 0.456 |
| 152 | 152 | 0.773 |
| 153 | 153 | 0.601 |
| 154 | 154 | 0.956 |
| 155 | 155 | 0.561 |
| 156 | 156 | 0.226 |
| 157 | 157 | 0.809 |
| 158 | 158 | 0.461 |
| 159 | 159 | 0.962 |
| 16 | 16 | 0.387 |
| 160 | 160 | 0.56 |
| 161 | 161 | 0.929 |
| 162 | 162 | 0.766 |
| 163 | 163 | 0.719 |
| 164 | 164 | 0.754 |
| 165 | 165 | 0.956 |
| 166 | 166 | 0.437 |
| 167 | 167 | 0.272 |
| 168 | 168 | 0.935 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.273 |
| 18 | 18 | 0.607 |
| 19 | 19 | 0.816 |
| 2 | 2 | 0.918 |
| 20 | 20 | 0.502 |
| 21 | 21 | 0.989 |
| 22 | 22 | 0.586 |
| 23 | 23 | 0.826 |
| 24 | 24 | 0.0901 |
| 25 | 25 | 0.454 |
| 26 | 26 | 0.032 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.504 |
| 29 | 29 | 0.183 |
| 3 | 3 | 0.665 |
| 30 | 30 | 0.758 |
| 31 | 31 | 0.915 |
| 32 | 32 | 0.0249 |
| 33 | 33 | 0.0591 |
| 34 | 34 | 0.591 |
| 35 | 35 | 0.721 |
| 36 | 36 | 0.0339 |
| 37 | 37 | 0.388 |
| 38 | 38 | 0.241 |
| 39 | 39 | 0.463 |
| 4 | 4 | 0.268 |
| 40 | 40 | 0.0203 |
| 41 | 41 | 0.219 |
| 42 | 42 | 0.547 |
| 43 | 43 | 0.484 |
| 44 | 44 | 0.816 |
| 45 | 45 | 0.976 |
| 46 | 46 | 0.489 |
| 47 | 47 | 0.0982 |
| 48 | 48 | 0.24 |
| 49 | 49 | 0.263 |
| 5 | 5 | 0.937 |
| 50 | 50 | 0.317 |
| 51 | 51 | 0.894 |
| 52 | 52 | 0.693 |
| 53 | 53 | 0.731 |
| 54 | 54 | 0.969 |
| 55 | 55 | 0.674 |
| 56 | 56 | 0.44 |
| 57 | 57 | 0.292 |
| 58 | 58 | 0.767 |
| 59 | 59 | 0.797 |
| 6 | 6 | 0.674 |
| 60 | 60 | 0.368 |
| 61 | 61 | 0.191 |
| 62 | 62 | 0.8 |
| 63 | 63 | 0.178 |
| 64 | 64 | 0.215 |
| 65 | 65 | 0.578 |
| 66 | 66 | 2.03208e-4 |
| 67 | 67 | 0.346 |
| 68 | 68 | 0.0176 |
| 69 | 69 | 0.0484 |
| 7 | 7 | 0.127 |
| 70 | 70 | 0.626 |
| 71 | 71 | 0.273 |
| 72 | 72 | 0.714 |
| 73 | 73 | 0.247 |
| 74 | 74 | 0.143 |
| 75 | 75 | 0.206 |
| 76 | 76 | 0.407 |
| 77 | 77 | 0.338 |
| 78 | 78 | 0.0385 |
| 79 | 79 | 0.0675 |
| 8 | 8 | 0.369 |
| 80 | 80 | 0.564 |
| 81 | 81 | 0.139 |
| 82 | 82 | 0.0373 |
| 83 | 83 | 0.524 |
| 84 | 84 | 0.414 |
| 85 | 85 | 0.228 |
| 86 | 86 | 0.974 |
| 87 | 87 | 0.0585 |
| 88 | 88 | 0.868 |
| 89 | 89 | 0.388 |
| 9 | 9 | 0.569 |
| 90 | 90 | 0.618 |
| 91 | 91 | 0.36 |
| 92 | 92 | 0.897 |
| 93 | 93 | 0.0937 |
| 94 | 94 | 0.611 |
| 95 | 95 | 0.0466 |
| 96 | 96 | 0.693 |
| 97 | 97 | 0.0681 |
| 98 | 98 | 0.109 |
| 99 | 99 | 0.717 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10753
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101092 KATO-III cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
3493 (signet ring cell adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100787 (gastric cancer cell line sample)
0101092 (KATO-III cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
