FF:10463-106H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005462 | |||
|accession_numbers=CAGE;DRX008014;DRR008886;DRZ000311;DRZ001696;DRZ011661;DRZ013046 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10463-106H4 | |id=FF:10463-106H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102024 | ||
|is_obsolete= | |||
|library_id=CNhs11252 | |||
|library_id_phase_based=2:CNhs11252 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10463 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10463 | |||
|name=squamous cell carcinoma cell line:EC-GI-10 | |name=squamous cell carcinoma cell line:EC-GI-10 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11252,LSID757,release008,COMPLETED | |profile_hcage=CNhs11252,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.389057900945367,0,0,0,0,0.116779743342887,0.0713494635703484,-0.136122778485555,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.385325859198791,0,0,-0.0819735467780792,0,0,0,0,0,-0.0266084326977091,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.676660026914246,0,-0.110224985180839,0,0,0,0,0,0,0,0,0.104607503515064,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.0259941636427485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0713494635703484,0,0,0,0.0384981842992508,0.0356747317851742,0,0,0,0,0,0.0455305462369451,0,0,0,0.183932331429756,-0.00312809925389895,0,0,0.0356747317851742,0,-0.026685887667358,-0.072170015137768,0,0,0,0,0,0,0,0,0,0,0.101981917448301,0,0,0,0,0,0,0.272375729116923,0,0,0,-0.0216197358234288,-0.0965525250731207,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0713494635703484,0,-0.026685887667358,0,0,0.132614371326254,0.0713494635703484,0,0,0,0,0,0,0,0.0690690847629203,0,0.047208967661362,0.241810716675319,0,0,-0.0886601478675657,0,0.0713494635703484,0,0.045746782347154,0,0,0,0,0,-0.0567704033822163,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0481965906172944,0.475693399027565,0,0,0,0,-0.23456593754915,0,0.0117348875325133,-0.0113707047530689,0,-0.484073751217088,0.130583088904267,0,0,0,0.0667506536182374,0.165867068761782,0,0,-0.121779851751874,-0.181349618560659,0.0356747317851742,0,-0.391044581551635,0,-0.276680551924947,0.067153319303549,0,0.166052599187394,0,0,0,0,0,0.0713494635703484,0.0713494635703484,0,0,0,0,-0.0574934668214365,-0.326988596678969,0.0305720805539524,0.0713494635703484,0.277097773429273,0,0.354034691473729,0,0,0.0986057173546962,0.0825269096193879,-0.00979958066145315,-0.29950364895402,0,-0.302389727009913,-0.119414337634984,0.0229282195697735,0.183932331429756,-0.147401849371139,-0.189981719549847,0,-0.275877892088862,0.0520902816654419,0.161245865130277,0.0806280393232481,-0.0604713018066903,0.0357229810641899,0.294497214933293,0.0713494635703484,0.23406548214859,-0.0596142858893766,0.155016676055327,0,0,-0.213016941047501,0.209426883719104,-0.240836768643387,0.068363229165192,-0.0776002603611375,-0.0773942780713535,0.113174944402799,-0.14118849284811,-0.00111826129160742,-0.0946175460338875,0,0,0,-0.0575780103057525,-0.288616469396538,-0.00993775866501745,0,-0.167729501762496,0.117951324608081,0,-0.185279181091713,-0.0625357853736164,0,0,0.129366566265131,0,0,-0.00620399575120145,0,0,-0.0327273305878562,0.0663962714834954,-0.100241190229291,0,0.0130190254427281,0.0390998271182261,-0.0252672503001201,0,0.303250337969805,-0.0158751759253562,-0.0209763789320194,0.21572289144542,0,-0.0873636470914285,0.410023915001573,0.111333048580519,-0.0062561985077979,0.485590833293108,0.160789453846678,-0.263471348216718,0.216390992524587,-0.403614005591435,0,-0.0881268324752877,0,-0.88354475051838,0.0580005144572444,0.0355040536248309,-0.160372758672689,0,0.0299513257664836,0,-0.0854683011994165,0,-0.219947425238555,0.167710045663302,-0.439289374580686,-0.0919983831654376,0,-0.121520484426808,0.77027911355513,0,0.178286922881229,0,0.920160463292756,-0.150367083334639,0.173172525153691,-0.145343242201462,-0.0370075392308934,0,0.080788333276617,0,0,0.495957217677002,-0.00141055561579881,0,0.078184384875614,0.128295731865373,0.0384981842992508,0.118094408713656,0.132614371326254,0,0.402647235206973,0,0,-0.189789456934091,-0.105141101417167,0.088360473177909,-0.120711970160502,0.00474482124506603,-0.0729480776690813,0,0,0.0565377161834142,0,-0.21734401607298,0,0,0.165236284767376,0,0,0,0,0.097851416700307,0,0,0,0,0.02801321437607,0,0,0.268304334230402,-0.120767848067858,0,-0.0736080870340277,0,0,0,0,0.352158886104249,0.0323815941268179,0,0,0.435122243969823,0,-0.0516679521060718,0.183339926737422,0,0.0356747317851742,0,-0.215723402553475,0.0738612113345492,0.186295585685449,0.184385253550853,0,0.272018830052467,0,0,0.0464733815370426,0,0,0.0356747317851742,0.0356747317851742,0.128565128631785,-0.193074439742792,0,0,0.0356747317851742,-0.144340030275536,0,0,0,0,-0.0543344989018686,0,0,0,0,0.193458327829916,-0.010232415976493,0,0.05975831481776,-0.327160280937028,0.6399018457669,0,0.186295585685449,0.210544741521375,0,0.0185379314895368,-0.0975337161434582,0,0,0,0,0,0,0,0.37811863276847,0,-0.0280189267143063,0,0,0,0,0,0.132614371326254,0,0,0,0,0,-0.0260496495188738,-0.0922240566585104,0.23406548214859,0,0,0,0.29972155887952,0.0713494635703484,0,0.183963280363067,0.141857808428385,0,0,0.0290066620608537,0,0,0,0,0,0.0726117204416907,0.101981917448301,0,0,0,0,-0.0969923612426051,0,0.0713494635703484,0,0.778115801890733,-0.564807121153884,0,0,0.138776474690426,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110746396113142,-0.136122778485555,0,0,0,0,0,0.0713494635703484,0,-0.142218926879837,0,0,0,0,-0.0425349101386288,0,0,0,0.367095488522107,0,0.116779743342887,0,0,0,0,0,0.181138366055686,0.0931477928427245,0,0,0,0,0,0,0.964423752869454,0,0,0,0.0356747317851742,0,0,0,0.0543146687130986,0,-0.154593144646656,0.032806505137891,0,0,0.00331758402258981,0,0,0,0,0,0,0.00433430775664715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00081668798008584,0,0,0,0,0,0,0,-0.0266084326977091,0,0,0.119721365036773,0,0,0,0,0,0,-0.00515273110109789,0.124408114551032,0.00415334425511649,0,0,0,-0.054385572482455,0,0,-0.00464638349388324,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.277097773429273,0,0,0,0,0,0,0,0,0.0713494635703484,0,0,0,0,0,0,0,0,0,0.101981917448301,0,0,0,0,-0.0819735467780792,0,0,0,0,0,0,0,0,0,0,0,0.0356747317851742,0.066307185663127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132614371326254,0,0,0,0,0,0,0.0830213777988785,0.132614371326254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,1.34532382167206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0394804365832136,0,0,0,0,0,0,0,0,0.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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=37.711 | |rna_weight_ug=37.711 | ||
|sample_age=65 | |sample_age=65 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0774 | |sample_cell_catalog=RCB0774 | ||
|sample_cell_line=EC-GI-10 | |sample_cell_line=EC-GI-10 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.18646129041522e-261!GO:0043226;organelle;2.0067598900387e-207!GO:0043229;intracellular organelle;8.88310107449681e-207!GO:0043231;intracellular membrane-bound organelle;1.74513923131188e-199!GO:0043227;membrane-bound organelle;2.53819636809741e-199!GO:0005737;cytoplasm;4.1984872808705e-182!GO:0044422;organelle part;2.26448886170734e-144!GO:0044446;intracellular organelle part;6.81386540683153e-143!GO:0044444;cytoplasmic part;1.09947334810555e-115!GO:0032991;macromolecular complex;3.12315813021659e-95!GO:0005634;nucleus;2.66767311614853e-93!GO:0044237;cellular metabolic process;3.44618169884971e-93!GO:0044238;primary metabolic process;6.31548355741779e-90!GO:0043170;macromolecule metabolic process;7.74888131994167e-88!GO:0030529;ribonucleoprotein complex;7.32598194706652e-85!GO:0044428;nuclear part;1.80368234140209e-79!GO:0005515;protein binding;1.56962742370316e-75!GO:0003723;RNA binding;1.01322641555924e-74!GO:0043233;organelle lumen;5.89871272084978e-74!GO:0031974;membrane-enclosed lumen;5.89871272084978e-74!GO:0005739;mitochondrion;3.76712947781235e-57!GO:0043283;biopolymer metabolic process;1.35147602903414e-55!GO:0006412;translation;8.99045628234029e-53!GO:0005840;ribosome;1.2259882737586e-51!GO:0010467;gene expression;2.16516446505427e-51!GO:0006396;RNA processing;1.13690330119643e-50!GO:0019538;protein metabolic process;4.37570948979386e-50!GO:0031981;nuclear lumen;7.88533400844506e-49!GO:0015031;protein transport;1.47828483479109e-47!GO:0033036;macromolecule localization;1.80618621899512e-47!GO:0031090;organelle membrane;9.20419403453087e-47!GO:0016043;cellular component organization and biogenesis;9.20419403453087e-47!GO:0043234;protein complex;9.39402436969918e-47!GO:0044267;cellular protein metabolic process;9.51198013986049e-47!GO:0044260;cellular macromolecule metabolic process;4.71755441035319e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.57522235991062e-46!GO:0003735;structural constituent of ribosome;9.88104655134901e-45!GO:0008104;protein localization;3.25988704460503e-43!GO:0045184;establishment of protein localization;9.21675401794208e-43!GO:0005829;cytosol;6.05316037251086e-41!GO:0043228;non-membrane-bound organelle;9.9927374094307e-40!GO:0043232;intracellular non-membrane-bound organelle;9.9927374094307e-40!GO:0016071;mRNA metabolic process;1.07663236487816e-39!GO:0009059;macromolecule biosynthetic process;4.1765846018955e-39!GO:0031967;organelle envelope;4.05495026016986e-38!GO:0033279;ribosomal subunit;4.661260780263e-38!GO:0031975;envelope;7.25537396718413e-38!GO:0044429;mitochondrial part;4.1619046198901e-37!GO:0009058;biosynthetic process;5.71341629416836e-36!GO:0008380;RNA splicing;6.38281677092047e-36!GO:0044249;cellular biosynthetic process;8.1234540529321e-36!GO:0006397;mRNA processing;1.22395090794787e-34!GO:0046907;intracellular transport;7.60240928434369e-34!GO:0006996;organelle organization and biogenesis;5.21620400740528e-32!GO:0003676;nucleic acid binding;4.68483622576854e-31!GO:0005654;nucleoplasm;1.85852297585398e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.02182321962916e-30!GO:0065003;macromolecular complex assembly;9.5628692356288e-30!GO:0006886;intracellular protein transport;1.12844532524396e-29!GO:0006259;DNA metabolic process;3.11158519778893e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.28460484981888e-27!GO:0022607;cellular component assembly;1.99024109393426e-26!GO:0005681;spliceosome;1.57325631632835e-25!GO:0016070;RNA metabolic process;2.72596016975975e-25!GO:0000166;nucleotide binding;4.68958462390179e-25!GO:0044451;nucleoplasm part;1.3257234328904e-24!GO:0005740;mitochondrial envelope;1.31548341649298e-23!GO:0051649;establishment of cellular localization;1.00260736807623e-22!GO:0019866;organelle inner membrane;1.38441392499966e-22!GO:0044445;cytosolic part;2.07703845296008e-22!GO:0007049;cell cycle;2.3934720942342e-22!GO:0051641;cellular localization;2.92071925181535e-22!GO:0031966;mitochondrial membrane;5.4010163568918e-22!GO:0012505;endomembrane system;1.92476071625494e-21!GO:0016462;pyrophosphatase activity;2.01790770473932e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.44019427628279e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.22869158613578e-21!GO:0017111;nucleoside-triphosphatase activity;9.34850286355456e-21!GO:0005743;mitochondrial inner membrane;1.01972433863821e-20!GO:0006512;ubiquitin cycle;1.02778286495925e-20!GO:0005730;nucleolus;1.35916607197946e-20!GO:0016874;ligase activity;1.58860393493393e-20!GO:0006119;oxidative phosphorylation;5.24822521789748e-20!GO:0015934;large ribosomal subunit;8.53840367856703e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.14242173943636e-19!GO:0019941;modification-dependent protein catabolic process;2.27395494646362e-19!GO:0043632;modification-dependent macromolecule catabolic process;2.27395494646362e-19!GO:0015935;small ribosomal subunit;2.82577163130032e-19!GO:0044257;cellular protein catabolic process;3.08644814161168e-19!GO:0006457;protein folding;3.78723191387482e-19!GO:0006511;ubiquitin-dependent protein catabolic process;4.74408313556313e-19!GO:0022618;protein-RNA complex assembly;8.632009592003e-19!GO:0008134;transcription factor binding;1.2001791017195e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.27886810660591e-17!GO:0044265;cellular macromolecule catabolic process;2.72459766879663e-17!GO:0032553;ribonucleotide binding;3.43457084176485e-17!GO:0032555;purine ribonucleotide binding;3.43457084176485e-17!GO:0043285;biopolymer catabolic process;5.47528659915568e-17!GO:0017076;purine nucleotide binding;6.36430853108605e-17!GO:0031980;mitochondrial lumen;1.00793743352325e-16!GO:0005759;mitochondrial matrix;1.00793743352325e-16!GO:0006974;response to DNA damage stimulus;1.41599545009334e-16!GO:0022402;cell cycle process;2.78233307330353e-16!GO:0030163;protein catabolic process;3.99788476521933e-16!GO:0048770;pigment granule;8.12575510089159e-16!GO:0042470;melanosome;8.12575510089159e-16!GO:0043412;biopolymer modification;9.89703627257083e-16!GO:0005694;chromosome;1.0812609151033e-15!GO:0008135;translation factor activity, nucleic acid binding;1.70952668445067e-15!GO:0044455;mitochondrial membrane part;1.83938220202198e-15!GO:0005783;endoplasmic reticulum;2.18527895181823e-15!GO:0006605;protein targeting;3.10864567202925e-15!GO:0006366;transcription from RNA polymerase II promoter;4.11992899238764e-15!GO:0005635;nuclear envelope;6.80233083561655e-15!GO:0051276;chromosome organization and biogenesis;6.87690328652431e-15!GO:0009057;macromolecule catabolic process;1.04131753299193e-14!GO:0048193;Golgi vesicle transport;1.05408557598086e-14!GO:0051082;unfolded protein binding;1.8232445850325e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.10389382069266e-14!GO:0005761;mitochondrial ribosome;3.2767883009685e-14!GO:0000313;organellar ribosome;3.2767883009685e-14!GO:0000278;mitotic cell cycle;4.01356998529445e-14!GO:0005794;Golgi apparatus;4.51280576325408e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.46824457356496e-14!GO:0012501;programmed cell death;1.00345373958977e-13!GO:0006915;apoptosis;1.53137975667256e-13!GO:0006464;protein modification process;1.53401222961208e-13!GO:0005746;mitochondrial respiratory chain;1.9647520763539e-13!GO:0005524;ATP binding;2.04930269482281e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.24665169737545e-13!GO:0006281;DNA repair;2.33789759006383e-13!GO:0016604;nuclear body;2.34549612256145e-13!GO:0032559;adenyl ribonucleotide binding;2.96999637190391e-13!GO:0031965;nuclear membrane;3.05643980250986e-13!GO:0044427;chromosomal part;3.69844763772678e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.27549496435153e-13!GO:0000375;RNA splicing, via transesterification reactions;4.27549496435153e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.27549496435153e-13!GO:0030554;adenyl nucleotide binding;6.43142088088448e-13!GO:0044432;endoplasmic reticulum part;6.96680806538695e-13!GO:0050136;NADH dehydrogenase (quinone) activity;9.26886551668295e-13!GO:0003954;NADH dehydrogenase activity;9.26886551668295e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.26886551668295e-13!GO:0042254;ribosome biogenesis and assembly;1.17943821265979e-12!GO:0016192;vesicle-mediated transport;1.93879776459378e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.02938931767937e-12!GO:0006913;nucleocytoplasmic transport;2.05632404331447e-12!GO:0044453;nuclear membrane part;2.05632404331447e-12!GO:0009719;response to endogenous stimulus;2.82489220487064e-12!GO:0008219;cell death;3.49897094834317e-12!GO:0016265;death;3.49897094834317e-12!GO:0043687;post-translational protein modification;3.59666649992336e-12!GO:0044248;cellular catabolic process;3.78614848608408e-12!GO:0006413;translational initiation;4.59541438460659e-12!GO:0016887;ATPase activity;5.05470624980045e-12!GO:0051169;nuclear transport;6.24262139345821e-12!GO:0003743;translation initiation factor activity;6.27980709360127e-12!GO:0006323;DNA packaging;8.34474383650362e-12!GO:0050794;regulation of cellular process;1.3509600099339e-11!GO:0004386;helicase activity;1.49787112527375e-11!GO:0051186;cofactor metabolic process;1.52252375248514e-11!GO:0006446;regulation of translational initiation;1.82728757988039e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11760980332077e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.57708783066379e-11!GO:0042773;ATP synthesis coupled electron transport;2.57708783066379e-11!GO:0003712;transcription cofactor activity;3.96980999221955e-11!GO:0016607;nuclear speck;4.20510497791493e-11!GO:0006260;DNA replication;4.81181335800184e-11!GO:0005643;nuclear pore;5.32620005412686e-11!GO:0008639;small protein conjugating enzyme activity;5.48211543234565e-11!GO:0042623;ATPase activity, coupled;6.59225507631586e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.9905225334488e-11!GO:0045271;respiratory chain complex I;6.9905225334488e-11!GO:0005747;mitochondrial respiratory chain complex I;6.9905225334488e-11!GO:0000087;M phase of mitotic cell cycle;7.14866872239465e-11!GO:0004842;ubiquitin-protein ligase activity;9.53730264946593e-11!GO:0006403;RNA localization;1.15824739758164e-10!GO:0007067;mitosis;1.22256897812343e-10!GO:0050657;nucleic acid transport;1.27382587775851e-10!GO:0051236;establishment of RNA localization;1.27382587775851e-10!GO:0050658;RNA transport;1.27382587775851e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.76923580352909e-10!GO:0019787;small conjugating protein ligase activity;2.33633300000054e-10!GO:0022403;cell cycle phase;2.56458292709912e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.85145354766474e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.14803237713721e-10!GO:0008026;ATP-dependent helicase activity;4.63668922768918e-10!GO:0051726;regulation of cell cycle;6.10493194023235e-10!GO:0048523;negative regulation of cellular process;7.21386691909288e-10!GO:0000074;regulation of progression through cell cycle;8.25231499879475e-10!GO:0005789;endoplasmic reticulum membrane;1.06920405885117e-09!GO:0006399;tRNA metabolic process;1.56402322368206e-09!GO:0008565;protein transporter activity;1.58405613932596e-09!GO:0016881;acid-amino acid ligase activity;1.6513373002364e-09!GO:0006732;coenzyme metabolic process;1.74317556830394e-09!GO:0005768;endosome;1.95075521559104e-09!GO:0051301;cell division;1.9546996605721e-09!GO:0006333;chromatin assembly or disassembly;3.35867876585068e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.56191171471477e-09!GO:0065004;protein-DNA complex assembly;4.39961947739701e-09!GO:0042981;regulation of apoptosis;4.4516572656151e-09!GO:0043067;regulation of programmed cell death;4.99906039043402e-09!GO:0000785;chromatin;5.21120333298687e-09!GO:0065002;intracellular protein transport across a membrane;8.2986721655361e-09!GO:0017038;protein import;8.50063918622294e-09!GO:0000279;M phase;1.04546653797416e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.14884648742588e-08!GO:0051246;regulation of protein metabolic process;1.29367250635766e-08!GO:0009055;electron carrier activity;1.35506057655482e-08!GO:0051028;mRNA transport;1.35506057655482e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.56372834644048e-08!GO:0048519;negative regulation of biological process;2.29497135218854e-08!GO:0043566;structure-specific DNA binding;2.4592175877067e-08!GO:0046930;pore complex;2.4592175877067e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.46219270704439e-08!GO:0006364;rRNA processing;4.56826328455238e-08!GO:0015986;ATP synthesis coupled proton transport;4.86643678174133e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.86643678174133e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.36730418025277e-08!GO:0019222;regulation of metabolic process;6.78176404765925e-08!GO:0032446;protein modification by small protein conjugation;7.08299112463998e-08!GO:0016072;rRNA metabolic process;7.92279475471385e-08!GO:0031324;negative regulation of cellular metabolic process;1.1987972235845e-07!GO:0016567;protein ubiquitination;1.31849817372179e-07!GO:0009259;ribonucleotide metabolic process;1.84050662407664e-07!GO:0006163;purine nucleotide metabolic process;1.966954486018e-07!GO:0005793;ER-Golgi intermediate compartment;2.14352862523809e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.1717858467286e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.24048320243824e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.24048320243824e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.24048320243824e-07!GO:0050789;regulation of biological process;2.25837606073462e-07!GO:0015630;microtubule cytoskeleton;2.40010000800568e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.61929346393565e-07!GO:0006461;protein complex assembly;3.14646763304405e-07!GO:0051188;cofactor biosynthetic process;3.14893106261023e-07!GO:0005667;transcription factor complex;3.59802845691719e-07!GO:0043038;amino acid activation;3.94684123500971e-07!GO:0006418;tRNA aminoacylation for protein translation;3.94684123500971e-07!GO:0043039;tRNA aminoacylation;3.94684123500971e-07!GO:0003924;GTPase activity;3.95960499277333e-07!GO:0016568;chromatin modification;4.4335008384765e-07!GO:0019829;cation-transporting ATPase activity;4.57577216262249e-07!GO:0044431;Golgi apparatus part;4.95859399943391e-07!GO:0003697;single-stranded DNA binding;5.0651567029465e-07!GO:0006164;purine nucleotide biosynthetic process;5.42886210951438e-07!GO:0009150;purine ribonucleotide metabolic process;6.03798553854958e-07!GO:0016564;transcription repressor activity;6.41039859474869e-07!GO:0043069;negative regulation of programmed cell death;6.63702494781891e-07!GO:0004298;threonine endopeptidase activity;6.76179387707259e-07!GO:0007005;mitochondrion organization and biogenesis;6.95457891009163e-07!GO:0006754;ATP biosynthetic process;7.11524961536683e-07!GO:0006753;nucleoside phosphate metabolic process;7.11524961536683e-07!GO:0051170;nuclear import;8.33050235381005e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.79594153037326e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.1208812815972e-06!GO:0046034;ATP metabolic process;1.16295417415909e-06!GO:0043066;negative regulation of apoptosis;1.26362421181194e-06!GO:0009260;ribonucleotide biosynthetic process;1.27144906561484e-06!GO:0006916;anti-apoptosis;1.36886348739265e-06!GO:0009892;negative regulation of metabolic process;1.4965209356447e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.499902382164e-06!GO:0009141;nucleoside triphosphate metabolic process;1.6284251275294e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.65458866336168e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.65828908579083e-06!GO:0009056;catabolic process;1.67027600174064e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.67355540888223e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.67355540888223e-06!GO:0009108;coenzyme biosynthetic process;1.71732898440011e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.77900707212503e-06!GO:0005525;GTP binding;1.78154183184393e-06!GO:0006334;nucleosome assembly;1.87139596571542e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.9204863405107e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99011014202095e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.0185533698526e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.02436404707848e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.02436404707848e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04602101311218e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04602101311218e-06!GO:0043623;cellular protein complex assembly;2.16397282785932e-06!GO:0006606;protein import into nucleus;2.22957247422285e-06!GO:0044440;endosomal part;2.35007776903085e-06!GO:0010008;endosome membrane;2.35007776903085e-06!GO:0005813;centrosome;2.41995840849024e-06!GO:0016563;transcription activator activity;2.66614260755412e-06!GO:0045259;proton-transporting ATP synthase complex;3.3221026856005e-06!GO:0000245;spliceosome assembly;3.57973848551651e-06!GO:0016779;nucleotidyltransferase activity;3.63820614258679e-06!GO:0031497;chromatin assembly;3.81744183029123e-06!GO:0003724;RNA helicase activity;5.3770245040229e-06!GO:0006793;phosphorus metabolic process;5.58781226365359e-06!GO:0006796;phosphate metabolic process;5.58781226365359e-06!GO:0006613;cotranslational protein targeting to membrane;5.95573807882754e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.25846401989745e-06!GO:0006261;DNA-dependent DNA replication;7.43437266786314e-06!GO:0030120;vesicle coat;7.79606220896659e-06!GO:0030662;coated vesicle membrane;7.79606220896659e-06!GO:0016481;negative regulation of transcription;7.80035136091279e-06!GO:0016787;hydrolase activity;7.84659793891198e-06!GO:0005815;microtubule organizing center;7.95011601126707e-06!GO:0005770;late endosome;8.76288155408295e-06!GO:0048475;coated membrane;8.87085144110369e-06!GO:0030117;membrane coat;8.87085144110369e-06!GO:0003713;transcription coactivator activity;9.45704762166785e-06!GO:0000139;Golgi membrane;1.01484683750161e-05!GO:0009060;aerobic respiration;1.0233210439673e-05!GO:0031323;regulation of cellular metabolic process;1.30772951528886e-05!GO:0000151;ubiquitin ligase complex;1.31355032621423e-05!GO:0005819;spindle;1.31455072687829e-05!GO:0016740;transferase activity;1.374493907626e-05!GO:0005762;mitochondrial large ribosomal subunit;1.42581617734988e-05!GO:0000315;organellar large ribosomal subunit;1.42581617734988e-05!GO:0051168;nuclear export;2.3904005978013e-05!GO:0051427;hormone receptor binding;2.81105159844951e-05!GO:0032561;guanyl ribonucleotide binding;2.92436612983965e-05!GO:0019001;guanyl nucleotide binding;2.92436612983965e-05!GO:0048522;positive regulation of cellular process;3.01750738027965e-05!GO:0003690;double-stranded DNA binding;3.04347499897492e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.59546125796277e-05!GO:0006752;group transfer coenzyme metabolic process;3.99568989866451e-05!GO:0045333;cellular respiration;4.14002085033759e-05!GO:0006350;transcription;4.48394226896958e-05!GO:0031988;membrane-bound vesicle;4.77909443696471e-05!GO:0045786;negative regulation of progression through cell cycle;4.79588968648289e-05!GO:0003714;transcription corepressor activity;4.89081710080298e-05!GO:0051789;response to protein stimulus;5.48254612889462e-05!GO:0006986;response to unfolded protein;5.48254612889462e-05!GO:0035257;nuclear hormone receptor binding;5.99789884750662e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.27517321960441e-05!GO:0016310;phosphorylation;7.23470261103694e-05!GO:0005773;vacuole;7.82828546846115e-05!GO:0005769;early endosome;0.000117035817649477!GO:0048471;perinuclear region of cytoplasm;0.000127373469060487!GO:0007264;small GTPase mediated signal transduction;0.000132051986008245!GO:0008186;RNA-dependent ATPase activity;0.000142671734674444!GO:0010468;regulation of gene expression;0.000148534353315877!GO:0007243;protein kinase cascade;0.000151525747299425!GO:0042802;identical protein binding;0.000167410628689002!GO:0006099;tricarboxylic acid cycle;0.000180375914790963!GO:0046356;acetyl-CoA catabolic process;0.000180375914790963!GO:0051329;interphase of mitotic cell cycle;0.000185937872622959!GO:0003899;DNA-directed RNA polymerase activity;0.000186259804238751!GO:0006612;protein targeting to membrane;0.000188892248401431!GO:0008654;phospholipid biosynthetic process;0.00019027683997884!GO:0045454;cell redox homeostasis;0.000192515541322142!GO:0031982;vesicle;0.000205910847690839!GO:0045893;positive regulation of transcription, DNA-dependent;0.000206458674489872!GO:0005788;endoplasmic reticulum lumen;0.000209448596054502!GO:0043021;ribonucleoprotein binding;0.000213350689993313!GO:0003682;chromatin binding;0.000213500711369994!GO:0005798;Golgi-associated vesicle;0.000244064106355292!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000252083394605726!GO:0000314;organellar small ribosomal subunit;0.00025801519511594!GO:0005763;mitochondrial small ribosomal subunit;0.00025801519511594!GO:0019899;enzyme binding;0.000259579892907572!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000261024498984947!GO:0000323;lytic vacuole;0.000285648033593532!GO:0005764;lysosome;0.000285648033593532!GO:0003702;RNA polymerase II transcription factor activity;0.000305345694678236!GO:0030867;rough endoplasmic reticulum membrane;0.000313958742002221!GO:0031072;heat shock protein binding;0.000314009087398317!GO:0045941;positive regulation of transcription;0.000323512338781499!GO:0006084;acetyl-CoA metabolic process;0.000336571446238561!GO:0031410;cytoplasmic vesicle;0.000338176671503011!GO:0005657;replication fork;0.000346953855360279!GO:0065007;biological regulation;0.000361081752609395!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000386791587741985!GO:0006402;mRNA catabolic process;0.000403035153146!GO:0009117;nucleotide metabolic process;0.000411794850705194!GO:0004004;ATP-dependent RNA helicase activity;0.000423335155756836!GO:0003729;mRNA binding;0.000526138284306783!GO:0051325;interphase;0.000553635654702881!GO:0005048;signal sequence binding;0.000584940339555644!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000592813064616524!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000626246720482772!GO:0016363;nuclear matrix;0.00064102642331408!GO:0007051;spindle organization and biogenesis;0.000677046639090313!GO:0051187;cofactor catabolic process;0.000819479164875173!GO:0015631;tubulin binding;0.000821050798931562!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000904716111619901!GO:0009967;positive regulation of signal transduction;0.000924435439767332!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000930361608076702!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000945355193887223!GO:0006417;regulation of translation;0.000945779448887651!GO:0045045;secretory pathway;0.000947665473016251!GO:0032774;RNA biosynthetic process;0.000961874794146698!GO:0006891;intra-Golgi vesicle-mediated transport;0.000978093945952304!GO:0007010;cytoskeleton organization and biogenesis;0.00104987438931601!GO:0008033;tRNA processing;0.00109574622184792!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0011119913841861!GO:0048500;signal recognition particle;0.00116203160546559!GO:0006351;transcription, DNA-dependent;0.00118683496967017!GO:0009109;coenzyme catabolic process;0.00121987820185171!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122468866798929!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00127080556347275!GO:0005885;Arp2/3 protein complex;0.00149052167607458!GO:0008234;cysteine-type peptidase activity;0.00149559464185362!GO:0065009;regulation of a molecular function;0.00154089023679829!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.001624565107063!GO:0000775;chromosome, pericentric region;0.00175549570615794!GO:0016251;general RNA polymerase II transcription factor activity;0.00178944006709219!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00179069097129758!GO:0044452;nucleolar part;0.00180496879952563!GO:0008312;7S RNA binding;0.00186522542619715!GO:0033116;ER-Golgi intermediate compartment membrane;0.00191864514638813!GO:0006352;transcription initiation;0.00193126965331535!GO:0016044;membrane organization and biogenesis;0.00206662899300274!GO:0016859;cis-trans isomerase activity;0.00208385296486153!GO:0031968;organelle outer membrane;0.00209731352884353!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00215119853207868!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00215119853207868!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00215119853207868!GO:0016491;oxidoreductase activity;0.00228867104434404!GO:0031252;leading edge;0.00231254645862837!GO:0006302;double-strand break repair;0.00232226942459961!GO:0006383;transcription from RNA polymerase III promoter;0.00235276887267439!GO:0045892;negative regulation of transcription, DNA-dependent;0.00235276887267439!GO:0051052;regulation of DNA metabolic process;0.00236042118606122!GO:0000075;cell cycle checkpoint;0.00239733862218422!GO:0008250;oligosaccharyl transferase complex;0.0024118947574577!GO:0000049;tRNA binding;0.00243884269129489!GO:0006405;RNA export from nucleus;0.00247094719607243!GO:0019867;outer membrane;0.00248054919650022!GO:0006414;translational elongation;0.00251386555538651!GO:0005874;microtubule;0.00251386555538651!GO:0006950;response to stress;0.00252976403231596!GO:0019843;rRNA binding;0.00271851715088212!GO:0043681;protein import into mitochondrion;0.00272816383245413!GO:0051101;regulation of DNA binding;0.00272816383245413!GO:0000776;kinetochore;0.00274855576341366!GO:0030036;actin cytoskeleton organization and biogenesis;0.0027501415078376!GO:0003684;damaged DNA binding;0.00284596922566584!GO:0046467;membrane lipid biosynthetic process;0.00287587569676003!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00303476452951109!GO:0008139;nuclear localization sequence binding;0.00308971569802604!GO:0051087;chaperone binding;0.00312057955990362!GO:0005741;mitochondrial outer membrane;0.00313548454280528!GO:0000059;protein import into nucleus, docking;0.00319669578838698!GO:0000786;nucleosome;0.00321777107331124!GO:0032508;DNA duplex unwinding;0.003324772987819!GO:0032392;DNA geometric change;0.003324772987819!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00334712036225971!GO:0045047;protein targeting to ER;0.00334712036225971!GO:0016197;endosome transport;0.00350201414847301!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00351642833476033!GO:0006818;hydrogen transport;0.00351642833476033!GO:0048487;beta-tubulin binding;0.00353443420156071!GO:0007088;regulation of mitosis;0.00358589738036781!GO:0005791;rough endoplasmic reticulum;0.00360429887807589!GO:0046489;phosphoinositide biosynthetic process;0.00383751696640178!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00384050734556112!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00384050734556112!GO:0008632;apoptotic program;0.00410700443326933!GO:0016853;isomerase activity;0.00429703121786392!GO:0003746;translation elongation factor activity;0.00431152600821858!GO:0051920;peroxiredoxin activity;0.00442354977306322!GO:0015992;proton transport;0.00447342343381465!GO:0006401;RNA catabolic process;0.00455008401488359!GO:0006091;generation of precursor metabolites and energy;0.00460355095456791!GO:0031326;regulation of cellular biosynthetic process;0.00464506470077058!GO:0006611;protein export from nucleus;0.00469486756540182!GO:0006672;ceramide metabolic process;0.0046961732412143!GO:0030118;clathrin coat;0.00524806599484028!GO:0019783;small conjugating protein-specific protease activity;0.00539146312983141!GO:0030134;ER to Golgi transport vesicle;0.0054518556905402!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00549685092587977!GO:0048468;cell development;0.00562882221471637!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0058906784701171!GO:0004576;oligosaccharyl transferase activity;0.00622976007339961!GO:0048518;positive regulation of biological process;0.0062673241674979!GO:0043065;positive regulation of apoptosis;0.00636228507566188!GO:0030880;RNA polymerase complex;0.00651871587855889!GO:0032200;telomere organization and biogenesis;0.00652733066250442!GO:0000723;telomere maintenance;0.00652733066250442!GO:0008637;apoptotic mitochondrial changes;0.00670233766081689!GO:0032984;macromolecular complex disassembly;0.00676670370738036!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00687415150657489!GO:0015399;primary active transmembrane transporter activity;0.00687415150657489!GO:0045449;regulation of transcription;0.00689853852078092!GO:0051252;regulation of RNA metabolic process;0.00739666552273383!GO:0003678;DNA helicase activity;0.00740046365135461!GO:0006268;DNA unwinding during replication;0.00747123105959002!GO:0005637;nuclear inner membrane;0.00757854683735165!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00777178653058808!GO:0046966;thyroid hormone receptor binding;0.00778876142232772!GO:0043624;cellular protein complex disassembly;0.00785694204447789!GO:0046474;glycerophospholipid biosynthetic process;0.00799483967718062!GO:0005684;U2-dependent spliceosome;0.00801224862804856!GO:0030132;clathrin coat of coated pit;0.00803779569102639!GO:0046519;sphingoid metabolic process;0.00808365854276705!GO:0004843;ubiquitin-specific protease activity;0.00812794778709683!GO:0030176;integral to endoplasmic reticulum membrane;0.00827793349862422!GO:0043068;positive regulation of programmed cell death;0.00836588827377134!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00863854323265582!GO:0005905;coated pit;0.00866962024976667!GO:0006984;ER-nuclear signaling pathway;0.0088178752516463!GO:0043488;regulation of mRNA stability;0.00883897944303485!GO:0043487;regulation of RNA stability;0.00883897944303485!GO:0035258;steroid hormone receptor binding;0.00887319302386779!GO:0005876;spindle microtubule;0.00889548400196688!GO:0008094;DNA-dependent ATPase activity;0.0090806356487215!GO:0006289;nucleotide-excision repair;0.00932987948462736!GO:0006892;post-Golgi vesicle-mediated transport;0.00955743035708319!GO:0004674;protein serine/threonine kinase activity;0.00959911162774004!GO:0016741;transferase activity, transferring one-carbon groups;0.00985474032245954!GO:0051098;regulation of binding;0.0100955971953199!GO:0000086;G2/M transition of mitotic cell cycle;0.0102486563594232!GO:0006376;mRNA splice site selection;0.010384190036038!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010384190036038!GO:0007017;microtubule-based process;0.011348323159176!GO:0007265;Ras protein signal transduction;0.011845848471507!GO:0006626;protein targeting to mitochondrion;0.0120349031015445!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0120349031015445!GO:0000428;DNA-directed RNA polymerase complex;0.0120349031015445!GO:0030663;COPI coated vesicle membrane;0.0120698105577357!GO:0030126;COPI vesicle coat;0.0120698105577357!GO:0008092;cytoskeletal protein binding;0.0122255537458309!GO:0043241;protein complex disassembly;0.0124268451680829!GO:0008168;methyltransferase activity;0.0126876652169618!GO:0018196;peptidyl-asparagine modification;0.0130594992549332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0130594992549332!GO:0030384;phosphoinositide metabolic process;0.0130631234171471!GO:0000781;chromosome, telomeric region;0.0133046728429146!GO:0030658;transport vesicle membrane;0.0133046728429146!GO:0006310;DNA recombination;0.0137309059853395!GO:0016584;nucleosome positioning;0.0137442145029969!GO:0043022;ribosome binding;0.014007949475141!GO:0006284;base-excision repair;0.014007949475141!GO:0005149;interleukin-1 receptor binding;0.0141987664497335!GO:0008017;microtubule binding;0.0142525813173829!GO:0009889;regulation of biosynthetic process;0.0142755674111779!GO:0005832;chaperonin-containing T-complex;0.0144349549818872!GO:0030521;androgen receptor signaling pathway;0.0145627112696921!GO:0006650;glycerophospholipid metabolic process;0.0147786133676136!GO:0003725;double-stranded RNA binding;0.0150640081056139!GO:0004221;ubiquitin thiolesterase activity;0.0151519885137448!GO:0015980;energy derivation by oxidation of organic compounds;0.0152842707305397!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158076246106149!GO:0022890;inorganic cation transmembrane transporter activity;0.0161914035203923!GO:0030029;actin filament-based process;0.0163799311236582!GO:0006275;regulation of DNA replication;0.0163901091128795!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164576017271443!GO:0006839;mitochondrial transport;0.016852026412162!GO:0031902;late endosome membrane;0.0168531820385351!GO:0003711;transcription elongation regulator activity;0.017347601154209!GO:0005869;dynactin complex;0.017347601154209!GO:0030127;COPII vesicle coat;0.0174380275668621!GO:0012507;ER to Golgi transport vesicle membrane;0.0174380275668621!GO:0001726;ruffle;0.0174380275668621!GO:0050662;coenzyme binding;0.0176200736666308!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0178216780384264!GO:0015002;heme-copper terminal oxidase activity;0.0178216780384264!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0178216780384264!GO:0004129;cytochrome-c oxidase activity;0.0178216780384264!GO:0030133;transport vesicle;0.017924722471878!GO:0000209;protein polyubiquitination;0.0179463712239229!GO:0009303;rRNA transcription;0.0188401697601204!GO:0007004;telomere maintenance via telomerase;0.0189191902424269!GO:0030119;AP-type membrane coat adaptor complex;0.0190603057330615!GO:0005669;transcription factor TFIID complex;0.0190863746686523!GO:0000792;heterochromatin;0.019186096898652!GO:0046983;protein dimerization activity;0.0196505850570527!GO:0030131;clathrin adaptor complex;0.0197338651642706!GO:0046483;heterocycle metabolic process;0.0200533713716993!GO:0009112;nucleobase metabolic process;0.0203362275630224!GO:0008629;induction of apoptosis by intracellular signals;0.0205138973581308!GO:0040029;regulation of gene expression, epigenetic;0.0218238996108366!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0218265299576386!GO:0016272;prefoldin complex;0.0218284571354803!GO:0009116;nucleoside metabolic process;0.0218408074883235!GO:0043492;ATPase activity, coupled to movement of substances;0.0220297427722864!GO:0008180;signalosome;0.0220356831841111!GO:0031625;ubiquitin protein ligase binding;0.022039221062389!GO:0006607;NLS-bearing substrate import into nucleus;0.0221285685359479!GO:0030968;unfolded protein response;0.0221723524033097!GO:0030433;ER-associated protein catabolic process;0.0223141821385752!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0223141821385752!GO:0016791;phosphoric monoester hydrolase activity;0.0223336680019986!GO:0007093;mitotic cell cycle checkpoint;0.0223345182565142!GO:0004518;nuclease activity;0.0223843961833155!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0235713811323745!GO:0006355;regulation of transcription, DNA-dependent;0.023851217547047!GO:0006739;NADP metabolic process;0.0241819184476652!GO:0006506;GPI anchor biosynthetic process;0.0241893724099534!GO:0006497;protein amino acid lipidation;0.0241893724099534!GO:0030137;COPI-coated vesicle;0.0241893724099534!GO:0008022;protein C-terminus binding;0.0241893724099534!GO:0051540;metal cluster binding;0.0245132512561028!GO:0051536;iron-sulfur cluster binding;0.0245132512561028!GO:0006740;NADPH regeneration;0.025444674138506!GO:0006098;pentose-phosphate shunt;0.025444674138506!GO:0051128;regulation of cellular component organization and biogenesis;0.0258050465212229!GO:0007052;mitotic spindle organization and biogenesis;0.0258153090330245!GO:0008538;proteasome activator activity;0.0261559023422922!GO:0050790;regulation of catalytic activity;0.0266662925807712!GO:0043596;nuclear replication fork;0.026764098504186!GO:0007050;cell cycle arrest;0.0271808096908568!GO:0017166;vinculin binding;0.0277205398899091!GO:0006505;GPI anchor metabolic process;0.0278474577373373!GO:0031529;ruffle organization and biogenesis;0.0278506088489099!GO:0043433;negative regulation of transcription factor activity;0.0279542596135294!GO:0008097;5S rRNA binding;0.0283765641231705!GO:0031124;mRNA 3'-end processing;0.0286760384291001!GO:0051059;NF-kappaB binding;0.0287556366930652!GO:0009451;RNA modification;0.0288768867883083!GO:0042026;protein refolding;0.029388716042471!GO:0001889;liver development;0.0296342265141841!GO:0016311;dephosphorylation;0.0300893979370596!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0306931122063273!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0311327033018376!GO:0046822;regulation of nucleocytoplasmic transport;0.0314582648401493!GO:0006643;membrane lipid metabolic process;0.0315480007165782!GO:0030660;Golgi-associated vesicle membrane;0.0315480007165782!GO:0007059;chromosome segregation;0.0315670931836336!GO:0000228;nuclear chromosome;0.0318319601125373!GO:0016790;thiolester hydrolase activity;0.0319551544679178!GO:0006338;chromatin remodeling;0.0329560747010748!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0334010091499236!GO:0007030;Golgi organization and biogenesis;0.0336846131361495!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0337313537966425!GO:0000922;spindle pole;0.0344257148369756!GO:0000082;G1/S transition of mitotic cell cycle;0.0344688408016861!GO:0051338;regulation of transferase activity;0.0348496663608419!GO:0008426;protein kinase C inhibitor activity;0.034854220135358!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0349539998761227!GO:0006144;purine base metabolic process;0.0350088663494304!GO:0009165;nucleotide biosynthetic process;0.035195715762303!GO:0032259;methylation;0.0352645846224876!GO:0032507;maintenance of cellular protein localization;0.0353013972509473!GO:0047485;protein N-terminus binding;0.0353637715377611!GO:0019834;phospholipase A2 inhibitor activity;0.0356277651627222!GO:0005784;translocon complex;0.0356416838365519!GO:0022415;viral reproductive process;0.0365077219051325!GO:0005774;vacuolar membrane;0.0371041624278775!GO:0008287;protein serine/threonine phosphatase complex;0.0372476537515487!GO:0004527;exonuclease activity;0.0372535574204967!GO:0031901;early endosome membrane;0.037802481989983!GO:0032940;secretion by cell;0.0380960353235873!GO:0001836;release of cytochrome c from mitochondria;0.038148706906114!GO:0043414;biopolymer methylation;0.0391833427679228!GO:0009893;positive regulation of metabolic process;0.03958853410707!GO:0043189;H4/H2A histone acetyltransferase complex;0.0397170003305668!GO:0030518;steroid hormone receptor signaling pathway;0.040164109209997!GO:0031970;organelle envelope lumen;0.0406727624853587!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0407206669650109!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0407206669650109!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0407674879860123!GO:0030911;TPR domain binding;0.0408856927303515!GO:0051287;NAD binding;0.0418370924890827!GO:0048144;fibroblast proliferation;0.0418370924890827!GO:0048145;regulation of fibroblast proliferation;0.0418370924890827!GO:0017134;fibroblast growth factor binding;0.0419000273962934!GO:0048146;positive regulation of fibroblast proliferation;0.042383296291678!GO:0008652;amino acid biosynthetic process;0.0425921195428348!GO:0000096;sulfur amino acid metabolic process;0.0428079730697117!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0428079730697117!GO:0010257;NADH dehydrogenase complex assembly;0.0428079730697117!GO:0033108;mitochondrial respiratory chain complex assembly;0.0428079730697117!GO:0042770;DNA damage response, signal transduction;0.0428079730697117!GO:0004721;phosphoprotein phosphatase activity;0.0432482900618918!GO:0003677;DNA binding;0.0434577637960376!GO:0050811;GABA receptor binding;0.0436941498667463!GO:0035267;NuA4 histone acetyltransferase complex;0.0441154877568181!GO:0000123;histone acetyltransferase complex;0.0441896601397652!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0461306672991466!GO:0006509;membrane protein ectodomain proteolysis;0.0471360241988961!GO:0033619;membrane protein proteolysis;0.0471360241988961!GO:0008601;protein phosphatase type 2A regulator activity;0.0478746260734499!GO:0007242;intracellular signaling cascade;0.0481082096022147!GO:0030659;cytoplasmic vesicle membrane;0.0485120815154611!GO:0022408;negative regulation of cell-cell adhesion;0.0485682567649871!GO:0031399;regulation of protein modification process;0.0485682567649871!GO:0007034;vacuolar transport;0.0489532524460346!GO:0022411;cellular component disassembly;0.0490386102547934!GO:0006541;glutamine metabolic process;0.0491203702688309 | |||
|sample_id=10463 | |sample_id=10463 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=esophagus | |sample_tissue=esophagus | ||
|top_motifs=ZEB1:2.11632970669;SNAI1..3:1.81288760321;TBX4,5:1.46474152533;PDX1:1.39638391255;ADNP_IRX_SIX_ZHX:1.32146692005;FOXA2:1.31307792932;NKX2-1,4:1.22930672823;NKX6-1,2:1.21085825952;ZBTB16:1.16125657248;FOXQ1:1.15726801996;TP53:1.15651057833;FOX{I1,J2}:1.12728654911;VSX1,2:1.08143636679;TEF:1.01815218224;POU1F1:0.98053588891;FOXL1:0.958499563467;HOX{A6,A7,B6,B7}:0.886433012956;NR6A1:0.878320894272;RBPJ:0.87561427712;MYOD1:0.8634871054;PITX1..3:0.834077526425;NKX2-3_NKX2-5:0.810145476994;LMO2:0.806367443829;STAT5{A,B}:0.762105618548;BPTF:0.743967546731;ONECUT1,2:0.719387512988;ELK1,4_GABP{A,B1}:0.708409883247;IRF7:0.705393217912;CDX1,2,4:0.681547034238;AIRE:0.66107015773;FOXP1:0.646996052573;CDC5L:0.63753442324;bHLH_family:0.631822585193;ATF2:0.629087345611;ZNF384:0.612393065545;NANOG:0.579402522025;SP1:0.548802302995;FOXM1:0.53184349269;HSF1,2:0.520016035863;CEBPA,B_DDIT3:0.51555702118;POU2F1..3:0.465413953226;MYBL2:0.422677269231;FOXO1,3,4:0.402129711904;ARID5B:0.399115975304;IKZF1:0.365617371284;E2F1..5:0.33671804472;FOS_FOS{B,L1}_JUN{B,D}:0.326857080855;NKX2-2,8:0.320792521117;NFE2:0.32017693663;ALX1:0.307139035288;IKZF2:0.302846654983;SOX17:0.293106467955;OCT4_SOX2{dimer}:0.288689330892;FOX{F1,F2,J1}:0.285899812379;NR5A1,2:0.262080771345;ATF5_CREB3:0.23799317318;HIF1A:0.236274234573;POU5F1:0.22183916679;PBX1:0.21997796698;NFIL3:0.212380598541;ATF4:0.205428278922;YY1:0.203901050882;SOX2:0.190985475363;TBP:0.190835264867;IRF1,2:0.180810372171;LHX3,4:0.179298712192;ZNF143:0.174062707982;NKX3-1:0.16892578259;ELF1,2,4:0.167116346057;NR1H4:0.157869482932;GLI1..3:0.154870764402;HLF:0.154068695531;NFE2L2:0.150921719457;PAX2:0.150464171144;NFKB1_REL_RELA:0.127360363089;FOXN1:0.120928207641;NFY{A,B,C}:0.103034831903;TFDP1:0.0991515937912;NFIX:0.0857258665027;NRF1:0.0788870442731;TEAD1:0.0783165095076;HMGA1,2:0.069303665052;HOX{A4,D4}:0.0655658716935;FOX{D1,D2}:0.060316474115;FOSL2:0.0399575410055;TFAP2{A,C}:0.0309905583534;POU6F1:0.0266137775532;TFAP2B:0.0257168935274;EN1,2:0.0115343398837;GFI1B:0.00740367686685;CRX:0.00378744957238;TOPORS:0.00195970752016;ZNF423:-0.00945750203581;TLX1..3_NFIC{dimer}:-0.016771411729;BACH2:-0.0577458794645;PPARG:-0.0613399913959;STAT2,4,6:-0.0673480766824;HBP1_HMGB_SSRP1_UBTF:-0.0712004860053;RFX2..5_RFXANK_RFXAP:-0.0718240128183;XCPE1{core}:-0.0803237599552;HNF1A:-0.0920473332125;NKX3-2:-0.0935192666094;MEF2{A,B,C,D}:-0.0985945262973;PATZ1:-0.106371070042;PAX8:-0.106392950296;ZNF148:-0.11511055263;EP300:-0.128249609096;PAX6:-0.130944822593;HOXA9_MEIS1:-0.137356069102;PAX1,9:-0.140614111476;DMAP1_NCOR{1,2}_SMARC:-0.145206109557;ZIC1..3:-0.146962510809;RFX1:-0.152848841727;MED-1{core}:-0.153011526792;MYB:-0.160940374609;BREu{core}:-0.175911776074;PAX4:-0.179200015412;REST:-0.180576528843;GATA6:-0.19116798776;HIC1:-0.192088688305;ZFP161:-0.196098771884;TFCP2:-0.201509151476;DBP:-0.232251289354;MTE{core}:-0.235835455279;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.247582607988;MTF1:-0.248961959825;PRRX1,2:-0.265007083405;CREB1:-0.267896015537;FOXP3:-0.276726370282;HAND1,2:-0.282701461909;AHR_ARNT_ARNT2:-0.285329289573;KLF4:-0.289219445105;LEF1_TCF7_TCF7L1,2:-0.289259736476;SOX{8,9,10}:-0.345213906813;HOX{A5,B5}:-0.347378879912;GTF2I:-0.349520499486;JUN:-0.351675953133;PAX3,7:-0.371288122109;MAZ:-0.378293709731;CUX2:-0.388664534509;ESR1:-0.399904247967;HNF4A_NR2F1,2:-0.415291166066;EGR1..3:-0.422400796239;RORA:-0.446311925049;UFEwm:-0.497268532014;GTF2A1,2:-0.518017970274;ETS1,2:-0.522478961841;GFI1:-0.535398865733;SPI1:-0.555320297488;RREB1:-0.577918950952;GZF1:-0.589703453023;SREBF1,2:-0.600558921149;PRDM1:-0.605283445956;TLX2:-0.608079516757;SOX5:-0.619747942978;ZNF238:-0.629260942199;SPIB:-0.634874556612;ALX4:-0.651134525871;MYFfamily:-0.658443029434;EBF1:-0.659632960409;ATF6:-0.668667996207;STAT1,3:-0.683906160968;AR:-0.687767283579;PAX5:-0.688072021303;ZBTB6:-0.691676363002;T:-0.720874101015;TAL1_TCF{3,4,12}:-0.731072717326;RUNX1..3:-0.760993106158;FOXD3:-0.801082578204;XBP1:-0.831354975664;POU3F1..4:-0.841252952729;EVI1:-0.862933490453;RXR{A,B,G}:-0.882886052148;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.888606083492;NHLH1,2:-0.905483316406;NFE2L1:-0.953461279716;SRF:-0.993153282105;NANOG{mouse}:-1.00531234156;GATA4:-1.02013307661;TGIF1:-1.03740937572;HES1:-1.06533478966;TFAP4:-1.14333038875;GCM1,2:-1.18517770007;NR3C1:-1.18790211219;MAFB:-1.21210664937;NFATC1..3:-1.28281291576;SMAD1..7,9:-1.28602254041;RXRA_VDR{dimer}:-1.31479798857;MZF1:-1.35282165234;HMX1:-1.68343625723;ESRRA:-1.70364408566;SPZ1:-2.30969467394 | |top_motifs=ZEB1:2.11632970669;SNAI1..3:1.81288760321;TBX4,5:1.46474152533;PDX1:1.39638391255;ADNP_IRX_SIX_ZHX:1.32146692005;FOXA2:1.31307792932;NKX2-1,4:1.22930672823;NKX6-1,2:1.21085825952;ZBTB16:1.16125657248;FOXQ1:1.15726801996;TP53:1.15651057833;FOX{I1,J2}:1.12728654911;VSX1,2:1.08143636679;TEF:1.01815218224;POU1F1:0.98053588891;FOXL1:0.958499563467;HOX{A6,A7,B6,B7}:0.886433012956;NR6A1:0.878320894272;RBPJ:0.87561427712;MYOD1:0.8634871054;PITX1..3:0.834077526425;NKX2-3_NKX2-5:0.810145476994;LMO2:0.806367443829;STAT5{A,B}:0.762105618548;BPTF:0.743967546731;ONECUT1,2:0.719387512988;ELK1,4_GABP{A,B1}:0.708409883247;IRF7:0.705393217912;CDX1,2,4:0.681547034238;AIRE:0.66107015773;FOXP1:0.646996052573;CDC5L:0.63753442324;bHLH_family:0.631822585193;ATF2:0.629087345611;ZNF384:0.612393065545;NANOG:0.579402522025;SP1:0.548802302995;FOXM1:0.53184349269;HSF1,2:0.520016035863;CEBPA,B_DDIT3:0.51555702118;POU2F1..3:0.465413953226;MYBL2:0.422677269231;FOXO1,3,4:0.402129711904;ARID5B:0.399115975304;IKZF1:0.365617371284;E2F1..5:0.33671804472;FOS_FOS{B,L1}_JUN{B,D}:0.326857080855;NKX2-2,8:0.320792521117;NFE2:0.32017693663;ALX1:0.307139035288;IKZF2:0.302846654983;SOX17:0.293106467955;OCT4_SOX2{dimer}:0.288689330892;FOX{F1,F2,J1}:0.285899812379;NR5A1,2:0.262080771345;ATF5_CREB3:0.23799317318;HIF1A:0.236274234573;POU5F1:0.22183916679;PBX1:0.21997796698;NFIL3:0.212380598541;ATF4:0.205428278922;YY1:0.203901050882;SOX2:0.190985475363;TBP:0.190835264867;IRF1,2:0.180810372171;LHX3,4:0.179298712192;ZNF143:0.174062707982;NKX3-1:0.16892578259;ELF1,2,4:0.167116346057;NR1H4:0.157869482932;GLI1..3:0.154870764402;HLF:0.154068695531;NFE2L2:0.150921719457;PAX2:0.150464171144;NFKB1_REL_RELA:0.127360363089;FOXN1:0.120928207641;NFY{A,B,C}:0.103034831903;TFDP1:0.0991515937912;NFIX:0.0857258665027;NRF1:0.0788870442731;TEAD1:0.0783165095076;HMGA1,2:0.069303665052;HOX{A4,D4}:0.0655658716935;FOX{D1,D2}:0.060316474115;FOSL2:0.0399575410055;TFAP2{A,C}:0.0309905583534;POU6F1:0.0266137775532;TFAP2B:0.0257168935274;EN1,2:0.0115343398837;GFI1B:0.00740367686685;CRX:0.00378744957238;TOPORS:0.00195970752016;ZNF423:-0.00945750203581;TLX1..3_NFIC{dimer}:-0.016771411729;BACH2:-0.0577458794645;PPARG:-0.0613399913959;STAT2,4,6:-0.0673480766824;HBP1_HMGB_SSRP1_UBTF:-0.0712004860053;RFX2..5_RFXANK_RFXAP:-0.0718240128183;XCPE1{core}:-0.0803237599552;HNF1A:-0.0920473332125;NKX3-2:-0.0935192666094;MEF2{A,B,C,D}:-0.0985945262973;PATZ1:-0.106371070042;PAX8:-0.106392950296;ZNF148:-0.11511055263;EP300:-0.128249609096;PAX6:-0.130944822593;HOXA9_MEIS1:-0.137356069102;PAX1,9:-0.140614111476;DMAP1_NCOR{1,2}_SMARC:-0.145206109557;ZIC1..3:-0.146962510809;RFX1:-0.152848841727;MED-1{core}:-0.153011526792;MYB:-0.160940374609;BREu{core}:-0.175911776074;PAX4:-0.179200015412;REST:-0.180576528843;GATA6:-0.19116798776;HIC1:-0.192088688305;ZFP161:-0.196098771884;TFCP2:-0.201509151476;DBP:-0.232251289354;MTE{core}:-0.235835455279;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.247582607988;MTF1:-0.248961959825;PRRX1,2:-0.265007083405;CREB1:-0.267896015537;FOXP3:-0.276726370282;HAND1,2:-0.282701461909;AHR_ARNT_ARNT2:-0.285329289573;KLF4:-0.289219445105;LEF1_TCF7_TCF7L1,2:-0.289259736476;SOX{8,9,10}:-0.345213906813;HOX{A5,B5}:-0.347378879912;GTF2I:-0.349520499486;JUN:-0.351675953133;PAX3,7:-0.371288122109;MAZ:-0.378293709731;CUX2:-0.388664534509;ESR1:-0.399904247967;HNF4A_NR2F1,2:-0.415291166066;EGR1..3:-0.422400796239;RORA:-0.446311925049;UFEwm:-0.497268532014;GTF2A1,2:-0.518017970274;ETS1,2:-0.522478961841;GFI1:-0.535398865733;SPI1:-0.555320297488;RREB1:-0.577918950952;GZF1:-0.589703453023;SREBF1,2:-0.600558921149;PRDM1:-0.605283445956;TLX2:-0.608079516757;SOX5:-0.619747942978;ZNF238:-0.629260942199;SPIB:-0.634874556612;ALX4:-0.651134525871;MYFfamily:-0.658443029434;EBF1:-0.659632960409;ATF6:-0.668667996207;STAT1,3:-0.683906160968;AR:-0.687767283579;PAX5:-0.688072021303;ZBTB6:-0.691676363002;T:-0.720874101015;TAL1_TCF{3,4,12}:-0.731072717326;RUNX1..3:-0.760993106158;FOXD3:-0.801082578204;XBP1:-0.831354975664;POU3F1..4:-0.841252952729;EVI1:-0.862933490453;RXR{A,B,G}:-0.882886052148;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.888606083492;NHLH1,2:-0.905483316406;NFE2L1:-0.953461279716;SRF:-0.993153282105;NANOG{mouse}:-1.00531234156;GATA4:-1.02013307661;TGIF1:-1.03740937572;HES1:-1.06533478966;TFAP4:-1.14333038875;GCM1,2:-1.18517770007;NR3C1:-1.18790211219;MAFB:-1.21210664937;NFATC1..3:-1.28281291576;SMAD1..7,9:-1.28602254041;RXRA_VDR{dimer}:-1.31479798857;MZF1:-1.35282165234;HMX1:-1.68343625723;ESRRA:-1.70364408566;SPZ1:-2.30969467394 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10463-106H4;search_select_hide=table117:FF:10463-106H4 | |||
}} | }} | ||
Latest revision as of 14:03, 3 June 2020
| Name: | squamous cell carcinoma cell line:EC-GI-10 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11252 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11252
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11252
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.706 |
| 10 | 10 | 0.73 |
| 100 | 100 | 0.235 |
| 101 | 101 | 0.425 |
| 102 | 102 | 0.53 |
| 103 | 103 | 0.879 |
| 104 | 104 | 0.446 |
| 105 | 105 | 0.214 |
| 106 | 106 | 0.874 |
| 107 | 107 | 0.3 |
| 108 | 108 | 0.479 |
| 109 | 109 | 0.0529 |
| 11 | 11 | 0.638 |
| 110 | 110 | 0.896 |
| 111 | 111 | 0.922 |
| 112 | 112 | 0.826 |
| 113 | 113 | 0.444 |
| 114 | 114 | 0.324 |
| 115 | 115 | 0.638 |
| 116 | 116 | 0.313 |
| 117 | 117 | 0.133 |
| 118 | 118 | 0.954 |
| 119 | 119 | 0.321 |
| 12 | 12 | 0.101 |
| 120 | 120 | 0.933 |
| 121 | 121 | 0.695 |
| 122 | 122 | 0.46 |
| 123 | 123 | 0.527 |
| 124 | 124 | 0.15 |
| 125 | 125 | 0.723 |
| 126 | 126 | 0.331 |
| 127 | 127 | 0.687 |
| 128 | 128 | 0.416 |
| 129 | 129 | 0.539 |
| 13 | 13 | 0.00287 |
| 130 | 130 | 0.639 |
| 131 | 131 | 0.177 |
| 132 | 132 | 0.809 |
| 133 | 133 | 0.0111 |
| 134 | 134 | 0.0558 |
| 135 | 135 | 0.075 |
| 136 | 136 | 0.0552 |
| 137 | 137 | 0.0186 |
| 138 | 138 | 0.698 |
| 139 | 139 | 0.2 |
| 14 | 14 | 0.748 |
| 140 | 140 | 0.732 |
| 141 | 141 | 0.606 |
| 142 | 142 | 0.769 |
| 143 | 143 | 0.0375 |
| 144 | 144 | 0.235 |
| 145 | 145 | 0.905 |
| 146 | 146 | 0.849 |
| 147 | 147 | 0.183 |
| 148 | 148 | 0.601 |
| 149 | 149 | 0.0976 |
| 15 | 15 | 0.946 |
| 150 | 150 | 0.234 |
| 151 | 151 | 0.801 |
| 152 | 152 | 0.185 |
| 153 | 153 | 0.716 |
| 154 | 154 | 0.188 |
| 155 | 155 | 0.226 |
| 156 | 156 | 0.97 |
| 157 | 157 | 0.86 |
| 158 | 158 | 0.262 |
| 159 | 159 | 0.44 |
| 16 | 16 | 0.933 |
| 160 | 160 | 0.166 |
| 161 | 161 | 0.501 |
| 162 | 162 | 0.781 |
| 163 | 163 | 0.46 |
| 164 | 164 | 0.464 |
| 165 | 165 | 0.739 |
| 166 | 166 | 0.904 |
| 167 | 167 | 0.514 |
| 168 | 168 | 0.965 |
| 169 | 169 | 0.523 |
| 17 | 17 | 0.317 |
| 18 | 18 | 0.544 |
| 19 | 19 | 0.111 |
| 2 | 2 | 0.644 |
| 20 | 20 | 0.0627 |
| 21 | 21 | 0.235 |
| 22 | 22 | 0.341 |
| 23 | 23 | 0.68 |
| 24 | 24 | 0.356 |
| 25 | 25 | 0.645 |
| 26 | 26 | 0.727 |
| 27 | 27 | 0.333 |
| 28 | 28 | 0.263 |
| 29 | 29 | 0.159 |
| 3 | 3 | 0.76 |
| 30 | 30 | 0.715 |
| 31 | 31 | 0.232 |
| 32 | 32 | 0.00299 |
| 33 | 33 | 0.371 |
| 34 | 34 | 0.309 |
| 35 | 35 | 0.126 |
| 36 | 36 | 0.383 |
| 37 | 37 | 0.907 |
| 38 | 38 | 0.957 |
| 39 | 39 | 0.304 |
| 4 | 4 | 0.718 |
| 40 | 40 | 0.116 |
| 41 | 41 | 0.00538 |
| 42 | 42 | 0.272 |
| 43 | 43 | 0.434 |
| 44 | 44 | 0.887 |
| 45 | 45 | 0.865 |
| 46 | 46 | 0.585 |
| 47 | 47 | 0.826 |
| 48 | 48 | 0.517 |
| 49 | 49 | 0.129 |
| 5 | 5 | 0.754 |
| 50 | 50 | 0.338 |
| 51 | 51 | 0.941 |
| 52 | 52 | 0.802 |
| 53 | 53 | 0.845 |
| 54 | 54 | 0.882 |
| 55 | 55 | 0.919 |
| 56 | 56 | 0.781 |
| 57 | 57 | 0.23 |
| 58 | 58 | 0.833 |
| 59 | 59 | 0.147 |
| 6 | 6 | 0.544 |
| 60 | 60 | 0.739 |
| 61 | 61 | 0.183 |
| 62 | 62 | 0.541 |
| 63 | 63 | 0.471 |
| 64 | 64 | 0.689 |
| 65 | 65 | 0.452 |
| 66 | 66 | 0.0247 |
| 67 | 67 | 0.629 |
| 68 | 68 | 0.0576 |
| 69 | 69 | 0.488 |
| 7 | 7 | 0.791 |
| 70 | 70 | 0.0351 |
| 71 | 71 | 0.777 |
| 72 | 72 | 0.565 |
| 73 | 73 | 0.403 |
| 74 | 74 | 0.0637 |
| 75 | 75 | 0.32 |
| 76 | 76 | 0.4 |
| 77 | 77 | 0.733 |
| 78 | 78 | 0.201 |
| 79 | 79 | 0.109 |
| 8 | 8 | 0.55 |
| 80 | 80 | 0.0385 |
| 81 | 81 | 0.233 |
| 82 | 82 | 0.0559 |
| 83 | 83 | 0.945 |
| 84 | 84 | 0.717 |
| 85 | 85 | 0.4 |
| 86 | 86 | 0.505 |
| 87 | 87 | 0.0458 |
| 88 | 88 | 0.483 |
| 89 | 89 | 0.537 |
| 9 | 9 | 0.144 |
| 90 | 90 | 0.79 |
| 91 | 91 | 0.11 |
| 92 | 92 | 0.155 |
| 93 | 93 | 0.493 |
| 94 | 94 | 0.245 |
| 95 | 95 | 0.326 |
| 96 | 96 | 0.371 |
| 97 | 97 | 0.984 |
| 98 | 98 | 0.0787 |
| 99 | 99 | 0.692 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11252
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
