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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005896
|accession_numbers=CAGE;DRX007892;DRR008764;DRZ000189;DRZ001574;DRZ011539;DRZ012924
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520cancer%2520cell%2520line%253aAZ521.CNhs11286.10549-107H9.hg38.nobarcode.ctss.bed.gz
|id=FF:10549-107H9
|id=FF:10549-107H9
|is_a=EFO:0002091;;FF:0000210;;FF:0100787
|is_a=EFO:0002091;;FF:0000210;;FF:0100787
|is_obsolete=
|is_obsolete=
|library_id=CNhs11286
|library_id_phase_based=2:CNhs11286
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10549
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10549
|name=gastric cancer cell line:AZ521
|name=gastric cancer cell line:AZ521
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11286,LSID759,release008,COMPLETED
|profile_hcage=CNhs11286,LSID759,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 78:
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|sample_cell_line=AZ521
Line 82: Line 100:
|top_motifs=NKX2-1,4:2.80906551958;LEF1_TCF7_TCF7L1,2:2.1942980726;PBX1:2.01647909049;CRX:2.00517882043;NANOG:1.78384707731;ELK1,4_GABP{A,B1}:1.76087039878;NRF1:1.73508209147;RBPJ:1.71243096849;TFDP1:1.6260105193;HOX{A6,A7,B6,B7}:1.47851365335;NFY{A,B,C}:1.43849716847;CDX1,2,4:1.27484689435;YY1:1.26183264165;ZNF143:1.25813507881;E2F1..5:1.25442509829;bHLH_family:1.25109213428;FOX{I1,J2}:1.06000860117;HOX{A5,B5}:1.03358155818;RFX2..5_RFXANK_RFXAP:1.01823066009;PRRX1,2:1.01246668038;LHX3,4:0.989647678735;MYB:0.987974301576;GFI1:0.895664519139;SOX{8,9,10}:0.88588510949;PAX8:0.881664794724;DBP:0.875874229355;PITX1..3:0.862411809368;FOXA2:0.852589117581;EVI1:0.833027022726;POU3F1..4:0.828729574002;T:0.826074965138;FOXP1:0.783885088232;ESRRA:0.745429070689;SOX17:0.737407722009;RXR{A,B,G}:0.7280081482;POU6F1:0.721232180893;HOX{A4,D4}:0.714966591486;VSX1,2:0.693625035807;POU1F1:0.689991387207;BREu{core}:0.659663218421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.657428521369;STAT5{A,B}:0.621614921998;ALX1:0.593341988581;SREBF1,2:0.577792259227;PAX4:0.576768908652;TEF:0.551586769895;SOX2:0.49396057609;NR5A1,2:0.472422953218;STAT1,3:0.444417273251;ADNP_IRX_SIX_ZHX:0.440644538381;ONECUT1,2:0.432690810164;TP53:0.424795860062;ZFP161:0.381896874965;ARID5B:0.37577976047;PDX1:0.354416873235;EGR1..3:0.332991291089;MYOD1:0.316789714939;OCT4_SOX2{dimer}:0.29837795651;PATZ1:0.296261650046;NKX2-3_NKX2-5:0.283649535662;HIC1:0.27899821338;FOXN1:0.278773774491;CDC5L:0.267645085431;GZF1:0.247224465536;HBP1_HMGB_SSRP1_UBTF:0.237815158944;ZBTB6:0.217406723168;CREB1:0.210278385242;MZF1:0.188222598277;RFX1:0.177005183282;GATA6:0.160957195138;GTF2A1,2:0.148484346798;ATF4:0.137819467456;MYBL2:0.131110755069;FOXL1:0.127152782523;BPTF:0.125215573827;PPARG:0.114716953645;FOX{D1,D2}:0.10758028374;GFI1B:0.0957474131286;RREB1:0.0922318287471;SNAI1..3:0.0918468947232;MTE{core}:0.0870124735857;ZBTB16:0.0706623491425;NANOG{mouse}:0.0502835713701;SOX5:0.0435404018291;TGIF1:0.0344688189047;ELF1,2,4:0.0270103896105;ZEB1:0.00639251326395;FOXP3:0.00584238916715;FOXQ1:-0.00218259212868;CUX2:-0.00595172095107;PAX5:-0.00760650169067;ZIC1..3:-0.0163157792673;HSF1,2:-0.0172605234896;EN1,2:-0.0257579305391;RORA:-0.039708455658;SP1:-0.0585515171715;HNF4A_NR2F1,2:-0.0619451735736;TOPORS:-0.0673474057801;NKX6-1,2:-0.101216401082;PAX1,9:-0.128134071487;ZNF384:-0.133502643832;ATF5_CREB3:-0.142860761392;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.143004682634;TFAP2B:-0.144664177307;HNF1A:-0.163975227495;TEAD1:-0.186963860124;HAND1,2:-0.197108241091;KLF4:-0.208392303287;XBP1:-0.225788521398;AHR_ARNT_ARNT2:-0.237863703896;NFE2L1:-0.269417690222;PAX2:-0.27209532857;MEF2{A,B,C,D}:-0.286304624633;LMO2:-0.301761038027;IKZF1:-0.308461525868;HLF:-0.309593014705;NR6A1:-0.317128315934;IRF7:-0.327072890788;DMAP1_NCOR{1,2}_SMARC:-0.328335500832;HOXA9_MEIS1:-0.334571694991;ESR1:-0.336173794364;IKZF2:-0.340568459516;TBX4,5:-0.350648846245;POU2F1..3:-0.362220226431;NFKB1_REL_RELA:-0.366189818086;PAX3,7:-0.373364483773;REST:-0.393583756361;NKX2-2,8:-0.39877589928;POU5F1:-0.40102460135;NKX3-2:-0.410850608048;NFE2:-0.423489973548;AIRE:-0.431760441106;ATF2:-0.441207407393;UFEwm:-0.443239616727;FOS_FOS{B,L1}_JUN{B,D}:-0.444916912292;AR:-0.464720692363;GTF2I:-0.470367587174;NR1H4:-0.471422866866;RUNX1..3:-0.471680154946;SPI1:-0.472620284846;MAZ:-0.513160312155;MED-1{core}:-0.524216856374;FOX{F1,F2,J1}:-0.549025552224;NFE2L2:-0.562239634558;TLX1..3_NFIC{dimer}:-0.563699229399;JUN:-0.567085373862;SPIB:-0.591340727012;FOSL2:-0.596899785332;GCM1,2:-0.597044633354;TAL1_TCF{3,4,12}:-0.599326608959;PRDM1:-0.599597970198;FOXO1,3,4:-0.599670670585;XCPE1{core}:-0.609871769466;NFIX:-0.626148686767;SRF:-0.639180188711;BACH2:-0.658035435421;FOXM1:-0.670025089435;HMGA1,2:-0.670514229657;GATA4:-0.672452162851;CEBPA,B_DDIT3:-0.674538891679;ZNF148:-0.691523954147;MYFfamily:-0.691890348757;NFIL3:-0.74019600084;TFCP2:-0.744385343225;NFATC1..3:-0.767036736918;NHLH1,2:-0.767352955602;NR3C1:-0.778522057641;ALX4:-0.809434120769;HES1:-0.813956715049;ETS1,2:-0.841902658797;EBF1:-0.866185025908;PAX6:-0.871212035159;STAT2,4,6:-0.952510565933;IRF1,2:-0.984803399917;SMAD1..7,9:-1.0056705829;TFAP4:-1.0191783331;TFAP2{A,C}:-1.02085144474;FOXD3:-1.06244699808;TLX2:-1.06521978533;TBP:-1.06588571565;MAFB:-1.10303181714;NKX3-1:-1.1042221866;ZNF238:-1.15730410337;RXRA_VDR{dimer}:-1.40601037519;MTF1:-1.43127401424;HIF1A:-1.43253129302;ATF6:-1.613696097;GLI1..3:-1.64395894468;EP300:-1.69484327426;HMX1:-1.79276974059;SPZ1:-1.91453036358;ZNF423:-2.31112388141
|top_motifs=NKX2-1,4:2.80906551958;LEF1_TCF7_TCF7L1,2:2.1942980726;PBX1:2.01647909049;CRX:2.00517882043;NANOG:1.78384707731;ELK1,4_GABP{A,B1}:1.76087039878;NRF1:1.73508209147;RBPJ:1.71243096849;TFDP1:1.6260105193;HOX{A6,A7,B6,B7}:1.47851365335;NFY{A,B,C}:1.43849716847;CDX1,2,4:1.27484689435;YY1:1.26183264165;ZNF143:1.25813507881;E2F1..5:1.25442509829;bHLH_family:1.25109213428;FOX{I1,J2}:1.06000860117;HOX{A5,B5}:1.03358155818;RFX2..5_RFXANK_RFXAP:1.01823066009;PRRX1,2:1.01246668038;LHX3,4:0.989647678735;MYB:0.987974301576;GFI1:0.895664519139;SOX{8,9,10}:0.88588510949;PAX8:0.881664794724;DBP:0.875874229355;PITX1..3:0.862411809368;FOXA2:0.852589117581;EVI1:0.833027022726;POU3F1..4:0.828729574002;T:0.826074965138;FOXP1:0.783885088232;ESRRA:0.745429070689;SOX17:0.737407722009;RXR{A,B,G}:0.7280081482;POU6F1:0.721232180893;HOX{A4,D4}:0.714966591486;VSX1,2:0.693625035807;POU1F1:0.689991387207;BREu{core}:0.659663218421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.657428521369;STAT5{A,B}:0.621614921998;ALX1:0.593341988581;SREBF1,2:0.577792259227;PAX4:0.576768908652;TEF:0.551586769895;SOX2:0.49396057609;NR5A1,2:0.472422953218;STAT1,3:0.444417273251;ADNP_IRX_SIX_ZHX:0.440644538381;ONECUT1,2:0.432690810164;TP53:0.424795860062;ZFP161:0.381896874965;ARID5B:0.37577976047;PDX1:0.354416873235;EGR1..3:0.332991291089;MYOD1:0.316789714939;OCT4_SOX2{dimer}:0.29837795651;PATZ1:0.296261650046;NKX2-3_NKX2-5:0.283649535662;HIC1:0.27899821338;FOXN1:0.278773774491;CDC5L:0.267645085431;GZF1:0.247224465536;HBP1_HMGB_SSRP1_UBTF:0.237815158944;ZBTB6:0.217406723168;CREB1:0.210278385242;MZF1:0.188222598277;RFX1:0.177005183282;GATA6:0.160957195138;GTF2A1,2:0.148484346798;ATF4:0.137819467456;MYBL2:0.131110755069;FOXL1:0.127152782523;BPTF:0.125215573827;PPARG:0.114716953645;FOX{D1,D2}:0.10758028374;GFI1B:0.0957474131286;RREB1:0.0922318287471;SNAI1..3:0.0918468947232;MTE{core}:0.0870124735857;ZBTB16:0.0706623491425;NANOG{mouse}:0.0502835713701;SOX5:0.0435404018291;TGIF1:0.0344688189047;ELF1,2,4:0.0270103896105;ZEB1:0.00639251326395;FOXP3:0.00584238916715;FOXQ1:-0.00218259212868;CUX2:-0.00595172095107;PAX5:-0.00760650169067;ZIC1..3:-0.0163157792673;HSF1,2:-0.0172605234896;EN1,2:-0.0257579305391;RORA:-0.039708455658;SP1:-0.0585515171715;HNF4A_NR2F1,2:-0.0619451735736;TOPORS:-0.0673474057801;NKX6-1,2:-0.101216401082;PAX1,9:-0.128134071487;ZNF384:-0.133502643832;ATF5_CREB3:-0.142860761392;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.143004682634;TFAP2B:-0.144664177307;HNF1A:-0.163975227495;TEAD1:-0.186963860124;HAND1,2:-0.197108241091;KLF4:-0.208392303287;XBP1:-0.225788521398;AHR_ARNT_ARNT2:-0.237863703896;NFE2L1:-0.269417690222;PAX2:-0.27209532857;MEF2{A,B,C,D}:-0.286304624633;LMO2:-0.301761038027;IKZF1:-0.308461525868;HLF:-0.309593014705;NR6A1:-0.317128315934;IRF7:-0.327072890788;DMAP1_NCOR{1,2}_SMARC:-0.328335500832;HOXA9_MEIS1:-0.334571694991;ESR1:-0.336173794364;IKZF2:-0.340568459516;TBX4,5:-0.350648846245;POU2F1..3:-0.362220226431;NFKB1_REL_RELA:-0.366189818086;PAX3,7:-0.373364483773;REST:-0.393583756361;NKX2-2,8:-0.39877589928;POU5F1:-0.40102460135;NKX3-2:-0.410850608048;NFE2:-0.423489973548;AIRE:-0.431760441106;ATF2:-0.441207407393;UFEwm:-0.443239616727;FOS_FOS{B,L1}_JUN{B,D}:-0.444916912292;AR:-0.464720692363;GTF2I:-0.470367587174;NR1H4:-0.471422866866;RUNX1..3:-0.471680154946;SPI1:-0.472620284846;MAZ:-0.513160312155;MED-1{core}:-0.524216856374;FOX{F1,F2,J1}:-0.549025552224;NFE2L2:-0.562239634558;TLX1..3_NFIC{dimer}:-0.563699229399;JUN:-0.567085373862;SPIB:-0.591340727012;FOSL2:-0.596899785332;GCM1,2:-0.597044633354;TAL1_TCF{3,4,12}:-0.599326608959;PRDM1:-0.599597970198;FOXO1,3,4:-0.599670670585;XCPE1{core}:-0.609871769466;NFIX:-0.626148686767;SRF:-0.639180188711;BACH2:-0.658035435421;FOXM1:-0.670025089435;HMGA1,2:-0.670514229657;GATA4:-0.672452162851;CEBPA,B_DDIT3:-0.674538891679;ZNF148:-0.691523954147;MYFfamily:-0.691890348757;NFIL3:-0.74019600084;TFCP2:-0.744385343225;NFATC1..3:-0.767036736918;NHLH1,2:-0.767352955602;NR3C1:-0.778522057641;ALX4:-0.809434120769;HES1:-0.813956715049;ETS1,2:-0.841902658797;EBF1:-0.866185025908;PAX6:-0.871212035159;STAT2,4,6:-0.952510565933;IRF1,2:-0.984803399917;SMAD1..7,9:-1.0056705829;TFAP4:-1.0191783331;TFAP2{A,C}:-1.02085144474;FOXD3:-1.06244699808;TLX2:-1.06521978533;TBP:-1.06588571565;MAFB:-1.10303181714;NKX3-1:-1.1042221866;ZNF238:-1.15730410337;RXRA_VDR{dimer}:-1.40601037519;MTF1:-1.43127401424;HIF1A:-1.43253129302;ATF6:-1.613696097;GLI1..3:-1.64395894468;EP300:-1.69484327426;HMX1:-1.79276974059;SPZ1:-1.91453036358;ZNF423:-2.31112388141
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10549-107H9;search_select_hide=table117:FF:10549-107H9
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:gastric cancer cell line:AZ521
Species:Human (Homo sapiens)
Library ID:CNhs11286
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexunknown
ageunknown
cell typeunclassifiable
cell lineAZ521
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005896
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11286 CAGE DRX007892 DRR008764
Accession ID Hg19

Library idBAMCTSS
CNhs11286 DRZ000189 DRZ001574
Accession ID Hg38

Library idBAMCTSS
CNhs11286 DRZ011539 DRZ012924
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0183
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.509
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0.89
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0466
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00792
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.236
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.254
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.23
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.442
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00452
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11286

Jaspar motifP-value
MA0002.26.17494e-4
MA0003.10.078
MA0004.10.509
MA0006.10.419
MA0007.10.445
MA0009.10.85
MA0014.10.876
MA0017.10.0331
MA0018.20.255
MA0019.10.419
MA0024.18.91852e-4
MA0025.10.817
MA0027.10.393
MA0028.11.8742e-4
MA0029.10.471
MA0030.10.244
MA0031.10.891
MA0035.20.144
MA0038.14.34681e-4
MA0039.20.716
MA0040.10.315
MA0041.10.272
MA0042.10.274
MA0043.10.0904
MA0046.10.189
MA0047.20.338
MA0048.10.163
MA0050.12.40829e-4
MA0051.10.00226
MA0052.10.021
MA0055.10.018
MA0057.10.213
MA0058.10.263
MA0059.10.836
MA0060.15.36005e-11
MA0061.10.0276
MA0062.21.17326e-4
MA0065.20.149
MA0066.10.374
MA0067.10.95
MA0068.10.123
MA0069.10.556
MA0070.10.00791
MA0071.10.754
MA0072.10.38
MA0073.10.808
MA0074.10.286
MA0076.14.56708e-5
MA0077.10.663
MA0078.10.969
MA0079.20.758
MA0080.21.35621e-9
MA0081.10.0795
MA0083.10.0215
MA0084.10.361
MA0087.10.241
MA0088.10.203
MA0090.10.713
MA0091.10.0276
MA0092.10.0778
MA0093.10.319
MA0099.28.41154e-13
MA0100.10.103
MA0101.10.455
MA0102.20.0114
MA0103.10.743
MA0104.20.25
MA0105.10.00616
MA0106.10.776
MA0107.10.184
MA0108.20.0087
MA0111.10.877
MA0112.23.23401e-5
MA0113.10.0287
MA0114.10.672
MA0115.10.912
MA0116.10.0367
MA0117.10.801
MA0119.10.114
MA0122.10.919
MA0124.10.146
MA0125.10.235
MA0131.10.0738
MA0135.10.204
MA0136.19.5186e-6
MA0137.20.173
MA0138.20.0176
MA0139.10.563
MA0140.10.0772
MA0141.10.274
MA0142.10.932
MA0143.10.207
MA0144.10.0382
MA0145.10.0728
MA0146.10.199
MA0147.10.293
MA0148.10.624
MA0149.10.893
MA0150.10.00929
MA0152.10.738
MA0153.10.668
MA0154.10.00781
MA0155.10.133
MA0156.10.44
MA0157.10.861
MA0159.10.306
MA0160.10.353
MA0162.10.0829
MA0163.10.009
MA0164.10.834
MA0258.10.00483
MA0259.10.37



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11286

Novel motifP-value
10.471
100.414
1000.377
1010.762
1020.76
1030.378
1040.481
1050.865
1061.396e-4
1070.0206
1080.649
1090.538
110.29
1100.714
1110.35
1120.0251
1130.137
1140.111
1150.588
1160.809
1170.718
1180.757
1190.146
120.715
1200.597
1210.839
1220.905
1230.894
1240.678
1250.745
1260.541
1270.161
1280.00104
1290.991
130.598
1300.038
1310.0186
1320.876
1330.519
1340.521
1350.00527
1360.246
1370.349
1380.0368
1390.0164
140.704
1400.552
1410.503
1420.75
1430.0659
1440.586
1450.312
1460.669
1470.38
1480.152
1490.0593
150.299
1500.503
1510.0906
1520.134
1530.296
1540.753
1550.961
1560.415
1570.872
1580.662
1590.462
160.312
1600.165
1610.853
1620.693
1630.297
1640.352
1650.167
1661
1670.507
1680.839
1690.00831
170.29
180.208
190.112
20.0924
200.126
210.874
220.154
230.00779
240.786
250.598
260.402
270.0445
280.788
290.886
30.219
300.228
310.662
320.0156
330.708
340.485
350.68
360.9
370.143
380.534
390.367
40.213
400.814
410.348
420.774
430.148
440.158
450.399
460.112
470.8
480.729
490.356
50.242
500.902
510.489
520.0619
530.281
540.467
550.227
560.284
570.848
580.249
590.0404
60.992
600.0171
610.881
620.12
630.312
640.422
650.087
660.0295
670.382
680.13
690.734
70.786
700.165
710.234
720.219
730.309
740.745
750.892
760.585
770.0933
780.977
790.0465
80.392
800.45
810.288
820.0175
830.344
840.657
850.0113
860.616
870.822
880.528
890.0591
90.0581
900.484
910.0242
920.16
930.802
940.171
950.607
960.37
970.784
980.194
990.781



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11286


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100787 (gastric cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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