FF:10555-107I6: Difference between revisions

Latest revision as of 14:29, 3 June 2020

Name:	neuroblastoma cell line:NH-12
Species:	Human (Homo sapiens)
Library ID:	CNhs11811
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	unknown
age	NA
cell type	neuroblast
cell line	NH-12
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005234

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11811		CAGE		DRX007963		DRR008835

Accession ID Hg19

Library id		BAM		CTSS
CNhs11811		DRZ000260		DRZ001645

Accession ID Hg38

Library id		BAM		CTSS
CNhs11811		DRZ011610		DRZ012995

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.045
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0.0858
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.364
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.536
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.045
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0.908
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.045
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.123
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0927
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.191
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.197
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.189
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0483
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.762
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.0858
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00656
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0548
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.045
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0058
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.282
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.123
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.123
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11811

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.80545e-4
MA0003.1	MA0003.1	0.143
MA0004.1	MA0004.1	0.343
MA0006.1	MA0006.1	0.0787
MA0007.1	MA0007.1	0.0992
MA0009.1	MA0009.1	0.141
MA0014.1	MA0014.1	0.473
MA0017.1	MA0017.1	0.00118
MA0018.2	MA0018.2	0.0026
MA0019.1	MA0019.1	0.429
MA0024.1	MA0024.1	2.30812e-6
MA0025.1	MA0025.1	0.596
MA0027.1	MA0027.1	0.801
MA0028.1	MA0028.1	0.159
MA0029.1	MA0029.1	0.77
MA0030.1	MA0030.1	0.929
MA0031.1	MA0031.1	0.282
MA0035.2	MA0035.2	0.543
MA0038.1	MA0038.1	1.04065e-4
MA0039.2	MA0039.2	0.0502
MA0040.1	MA0040.1	0.247
MA0041.1	MA0041.1	0.225
MA0042.1	MA0042.1	0.5
MA0043.1	MA0043.1	0.062
MA0046.1	MA0046.1	0.344
MA0047.2	MA0047.2	0.0752
MA0048.1	MA0048.1	0.581
MA0050.1	MA0050.1	4.50675e-9
MA0051.1	MA0051.1	1.17488e-4
MA0052.1	MA0052.1	0.00786
MA0055.1	MA0055.1	0.816
MA0057.1	MA0057.1	0.114
MA0058.1	MA0058.1	0.358
MA0059.1	MA0059.1	0.309
MA0060.1	MA0060.1	5.23619e-14
MA0061.1	MA0061.1	0.0121
MA0062.2	MA0062.2	0.165
MA0065.2	MA0065.2	0.0032
MA0066.1	MA0066.1	0.059
MA0067.1	MA0067.1	0.945
MA0068.1	MA0068.1	0.529
MA0069.1	MA0069.1	0.779
MA0070.1	MA0070.1	0.499
MA0071.1	MA0071.1	0.194
MA0072.1	MA0072.1	0.342
MA0073.1	MA0073.1	0.259
MA0074.1	MA0074.1	0.0991
MA0076.1	MA0076.1	0.0173
MA0077.1	MA0077.1	0.104
MA0078.1	MA0078.1	0.572
MA0079.2	MA0079.2	0.205
MA0080.2	MA0080.2	1.49944e-11
MA0081.1	MA0081.1	0.197
MA0083.1	MA0083.1	0.0646
MA0084.1	MA0084.1	0.403
MA0087.1	MA0087.1	0.184
MA0088.1	MA0088.1	0.444
MA0090.1	MA0090.1	0.0115
MA0091.1	MA0091.1	0.369
MA0092.1	MA0092.1	0.224
MA0093.1	MA0093.1	0.252
MA0099.2	MA0099.2	5.44045e-19
MA0100.1	MA0100.1	0.516
MA0101.1	MA0101.1	0.0304
MA0102.2	MA0102.2	0.0137
MA0103.1	MA0103.1	0.0718
MA0104.2	MA0104.2	0.0386
MA0105.1	MA0105.1	0.0289
MA0106.1	MA0106.1	0.301
MA0107.1	MA0107.1	0.00763
MA0108.2	MA0108.2	0.458
MA0111.1	MA0111.1	0.918
MA0112.2	MA0112.2	1.31793e-4
MA0113.1	MA0113.1	0.102
MA0114.1	MA0114.1	0.0283
MA0115.1	MA0115.1	0.673
MA0116.1	MA0116.1	0.0167
MA0117.1	MA0117.1	0.978
MA0119.1	MA0119.1	0.136
MA0122.1	MA0122.1	0.373
MA0124.1	MA0124.1	0.691
MA0125.1	MA0125.1	0.143
MA0131.1	MA0131.1	0.383
MA0135.1	MA0135.1	0.527
MA0136.1	MA0136.1	1.9431e-8
MA0137.2	MA0137.2	0.194
MA0138.2	MA0138.2	0.686
MA0139.1	MA0139.1	0.44
MA0140.1	MA0140.1	0.425
MA0141.1	MA0141.1	0.00674
MA0142.1	MA0142.1	0.736
MA0143.1	MA0143.1	0.945
MA0144.1	MA0144.1	0.0113
MA0145.1	MA0145.1	0.101
MA0146.1	MA0146.1	0.0593
MA0147.1	MA0147.1	0.0544
MA0148.1	MA0148.1	0.031
MA0149.1	MA0149.1	0.0423
MA0150.1	MA0150.1	7.9425e-5
MA0152.1	MA0152.1	0.671
MA0153.1	MA0153.1	0.154
MA0154.1	MA0154.1	0.0339
MA0155.1	MA0155.1	0.459
MA0156.1	MA0156.1	0.0022
MA0157.1	MA0157.1	0.0729
MA0159.1	MA0159.1	0.00353
MA0160.1	MA0160.1	0.0181
MA0162.1	MA0162.1	0.253
MA0163.1	MA0163.1	0.0194
MA0164.1	MA0164.1	0.945
MA0258.1	MA0258.1	0.00816
MA0259.1	MA0259.1	0.0551

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11811

Novel motif	Logo	P-value
1	1	0.22
10	10	0.309
100	100	0.913
101	101	0.549
102	102	0.739
103	103	0.175
104	104	0.517
105	105	0.406
106	106	0.00363
107	107	0.0196
108	108	0.678
109	109	0.0211
11	11	0.0948
110	110	0.268
111	111	0.655
112	112	0.105
113	113	0.691
114	114	0.0894
115	115	0.936
116	116	0.344
117	117	0.214
118	118	0.68
119	119	0.328
12	12	0.588
120	120	0.233
121	121	0.972
122	122	0.941
123	123	0.251
124	124	0.472
125	125	0.819
126	126	0.0746
127	127	0.166
128	128	0.047
129	129	0.167
13	13	0.0804
130	130	0.612
131	131	0.338
132	132	0.805
133	133	0.558
134	134	0.804
135	135	0.45
136	136	0.565
137	137	0.369
138	138	0.986
139	139	0.426
14	14	0.614
140	140	0.383
141	141	0.615
142	142	0.717
143	143	0.0597
144	144	0.812
145	145	0.152
146	146	0.605
147	147	0.547
148	148	0.0153
149	149	0.064
15	15	0.206
150	150	0.266
151	151	0.337
152	152	0.0181
153	153	0.723
154	154	0.942
155	155	0.491
156	156	0.637
157	157	0.398
158	158	0.109
159	159	0.00873
16	16	0.106
160	160	0.374
161	161	0.919
162	162	0.747
163	163	0.289
164	164	0.166
165	165	0.178
166	166	0.755
167	167	0.416
168	168	0.0574
169	169	0.0187
17	17	0.114
18	18	0.429
19	19	0.14
2	2	0.224
20	20	0.898
21	21	0.283
22	22	0.142
23	23	0.014
24	24	0.135
25	25	0.76
26	26	0.0536
27	27	0.242
28	28	0.637
29	29	0.213
3	3	0.173
30	30	0.302
31	31	0.576
32	32	0.00294
33	33	0.348
34	34	0.415
35	35	0.929
36	36	0.799
37	37	0.0782
38	38	0.285
39	39	0.147
4	4	0.545
40	40	0.204
41	41	0.174
42	42	0.491
43	43	0.134
44	44	0.13
45	45	0.246
46	46	0.185
47	47	0.458
48	48	0.211
49	49	0.304
5	5	0.156
50	50	0.483
51	51	0.427
52	52	0.105
53	53	0.884
54	54	0.188
55	55	0.107
56	56	0.355
57	57	0.906
58	58	0.287
59	59	0.0204
6	6	0.971
60	60	0.0219
61	61	0.282
62	62	0.149
63	63	0.18
64	64	0.669
65	65	0.119
66	66	0.47
67	67	0.872
68	68	0.134
69	69	0.345
7	7	0.253
70	70	0.0081
71	71	0.0608
72	72	0.225
73	73	0.0213
74	74	0.241
75	75	0.333
76	76	0.973
77	77	0.0425
78	78	0.239
79	79	0.0709
8	8	0.156
80	80	0.0705
81	81	0.434
82	82	0.225
83	83	0.0662
84	84	0.605
85	85	0.0194
86	86	0.409
87	87	0.0227
88	88	0.671
89	89	0.0534
9	9	0.165
90	90	0.364
91	91	0.175
92	92	0.0511
93	93	0.718
94	94	0.223
95	95	0.0528
96	96	0.257
97	97	0.549
98	98	0.635
99	99	0.377

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11811

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100932 neuroblastoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000013,UBERON:0000479,UBERON:0000073,UBERON:0002410,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000010,UBERON:0001016,UBERON:0000924,UBERON:0006601
+|DRA_sample_Accession=CAGE@SAMD00005234
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000333,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000221,CL:0000219,CL:0000220,CL:0000004,CL:0000255,CL:0000133
+|accession_numbers=CAGE;DRX007963;DRR008835;DRZ000260;DRZ001645;DRZ011610;DRZ012995
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994,DOID:169
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100932
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!3.44!2780.04!MYCN;;chr11:71955210..71955227,-!p1@PHOX2A!3.00!988.57!PHOX2A;;chr4:174451370..174451387,-!p1@HAND2!2.85!705.06!HAND2;;chr2:16081912..16081931,+!p2@MYCN!2.53!340.08!MYCN;;chr2:16082155..16082169,+!p3@MYCN!2.34!218.42!MYCN;;chr3:128212033..128212051,-!p1@GATA2!2.28!187.84!GATA2;;chr6:50786591..50786614,+!p1@TFAP2B!2.26!182.05!TFAP2B;;chr5:153857778..153857794,-!p1@HAND1!2.19!155.08!HAND1;;chr2:16080635..16080650,+!p4@MYCN!2.18!149.07!MYCN;;chr5:50679228..50679288,+!p1@ISL1!2.14!135.64!ISL1;;chr4:41750731..41750748,-!p1@PHOX2B!2.04!109.65!PHOX2B;;chr2:74741569..74741620,+!p1@TLX2!1.99!97.20!TLX2;;chr4:174451350..174451363,-!p3@HAND2!1.97!93.37!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.95!235.35!TWIST1;;chr14:36003363..36003378,+!p1@INSM2!1.95!88.35!INSM2;;chr10:8096631..8096660,+!p1@GATA3!1.90!95.01!GATA3;;chr2:16082395..16082415,+!p6@MYCN!1.85!70.33!MYCN;;chr2:16080823..16080836,+!p5@MYCN!1.84!67.93!MYCN;;chr13:100634031..100634045,+!p1@ZIC2!1.79!60.72!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.77!57.44!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.68!46.63!ZIC5;;chr6:50786571..50786590,+!p2@TFAP2B!1.65!43.90!TFAP2B;;chr2:16082094..16082106,+!p7@MYCN!1.65!43.47!MYCN;;chr4:174450089..174450153,-!p2@HAND2!1.63!41.94!HAND2;;chr2:16082418..16082429,+!p8@MYCN!1.63!41.28!MYCN;;chr8:40755333..40755352,-!p1@ZMAT4!1.61!40.19!ZMAT4;;chr1:214161272..214161322,+!p1@PROX1!1.60!53.84!PROX1;;chr6:50786547..50786564,+!p3@TFAP2B!1.57!35.82!TFAP2B;;chr6:50789717..50789729,+!p4@TFAP2B!1.56!35.49!TFAP2B;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.96!PRRX2;;chr4:41750839..41750850,-!p2@PHOX2B!1.53!33.09!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.77!TCF12;;chr2:2334997..2335053,-!p1@MYT1L!1.48!29.27!MYT1L;;chr13:100634004..100634025,+!p2@ZIC2!1.48!28.94!ZIC2;;chr11:8102749..8102769,+!p2@TUB!1.47!54.60!TUB;;chr2:25475120..25475176,-!p2@DNMT3A!1.47!38.00!DNMT3A;;chr18:52989031..52989079,-!p2@TCF4!1.46!63.89!TCF4;;chr10:8096772..8096787,+!p2@GATA3!1.45!32.22!GATA3;;chr7:35293685..35293718,-!p1@TBX20!1.43!25.99!TBX20;;chr3:128206762..128206781,-!p2@GATA2!1.42!151.58!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.42!25.34!HAND1;;chr2:74741642..74741658,+!p2@TLX2!1.41!24.46!TLX2;;chr17:46622440..46622477,-!p5@HOXB2!1.38!25.66!HOXB2;;chr18:52969674..52969685,-!p24@TCF4!1.38!23.04!TCF4;;chr21:47063625..47063658,+!p1@PCBP3!1.37!95.01!PCBP3;;chr4:41750922..41750939,-!p4@PHOX2B!1.36!22.17!PHOX2B;;chr19:9609272..9609297,-!p1@ZNF560!1.36!21.95!ZNF560;;chr13:37494365..37494381,-!p1@SMAD9!1.35!36.69!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.12!ZNF711;;chr16:67197654..67197716,+!p3@HSF4!1.35!21.62!HSF4;;chr2:2328725..2328739,-!p5@MYT1L!1.34!21.08!MYT1L;;chr17:59477233..59477263,+!p1@TBX2!1.32!59.85!TBX2;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.02!RCOR2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.29!18.46!PEG3;;chr1:151032922..151032951,+!p2@MLLT11!1.28!29.81!MLLT11;;chr17:53342311..53342400,+!p1@HLF!1.28!20.75!HLF;;chr17:41623692..41623715,-!p1@ETV4!1.25!70.11!ETV4;;chr11:8102846..8102892,+!p1@TUB!1.24!22.93!TUB;;chr9:14314131..14314147,-!p2@NFIB!1.23!87.80!NFIB;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.38!BCL11A;;chr10:70320074..70320106,+!p1@TET1!1.23!32.11!TET1;;chr9:77112244..77112262,+!p1@RORB!1.23!17.69!RORB;;chr5:170736243..170736279,+!p1@TLX3!1.23!16.16!TLX3;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.62!ASCL1;;chr17:59477197..59477212,+!p2@TBX2!1.19!24.90!TBX2;;chr4:81118647..81118666,+!p1@PRDM8!1.19!19.00!PRDM8;;chr2:219849897..219849928,-!p2@FEV!1.19!14.52!FEV;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.60!GATA3;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.17!131.16!ZNF595;;chr18:56532100..56532130,+!p1@ZNF532!1.16!24.90!ZNF532;;chr18:55102628..55102646,+!p2@ONECUT2!1.16!13.43!ONECUT2;;chr2:219849805..219849819,-!p3@FEV!1.16!13.43!FEV;;chr12:54447637..54447659,+!p4@HOXC4!1.16!13.43!HOXC4;;chr4:41750793..41750804,-!p5@PHOX2B!1.15!13.11!PHOX2B;;chr5:150284532..150284549,-!p1@ZNF300!1.13!26.10!ZNF300;;chr4:299227..299272,-!p1@ZNF732!1.13!12.45!ZNF732;;chr18:56531584..56531646,+!p4@ZNF532!1.12!16.27!ZNF532;;chr12:54447599..54447630,+!p3@HOXC4!1.12!14.96!HOXC4;;chr2:45168997..45169020,+!p4@SIX3!1.12!12.12!SIX3;;chr2:166326200..166326216,+!p1@CSRNP3!1.11!17.26!CSRNP3;;chr2:176994408..176994492,+!p1@HOXD8!1.11!12.01!HOXD8;;chr10:50604121..50604142,-!p1@DRGX!1.11!11.79!DRGX;;chr1:151032860..151032918,+!p1@MLLT11!1.10!137.71!MLLT11;;chr3:40547564..40547616,+!p1@ZNF620!1.10!16.49!ZNF620;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.36!HOXC9;;chrY:21906594..21906622,-!p1@KDM5D!1.09!11.36!KDM5D;;chr18:55102598..55102623,+!p1@ONECUT2!1.09!11.36!ONECUT2;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.28!TBX3;;chr19:12163769..12163798,-!p1@ZNF878!1.08!14.42!ZNF878;;chr10:131762504..131762555,-!p1@EBF3!1.08!11.03!EBF3;;chr6:50786631..50786635,+!p11@TFAP2B!1.08!11.03!TFAP2B;;chr19:22817119..22817145,+!p1@ZNF492!1.07!18.13!ZNF492;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.67!HOXB2;;chr7:19185475..19185487,-!p1@FERD3L!1.07!10.70!FERD3L;;chr12:85673977..85674015,+!p1@ALX1!1.06!10.59!ALX1;;chr13:100634130..100634143,+!p3@ZIC2!1.06!10.48!ZIC2;;chrX:84498989..84499003,+!p1@ZNF711!1.05!13.98!ZNF711;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.27!TBX3;;chr11:8102819..8102845,+!p3@TUB!1.04!12.56!TUB;;chr16:73092898..73092931,-!p1@ZFHX3!1.03!37.79!ZFHX3;;chr19:38042240..38042309,+!p2@ZNF540!1.03!15.07!ZNF540;;chr2:16082384..16082391,+!p9@MYCN!1.03!9.61!MYCN;;chr2:5832493..5832507,+!p2@SOX11!1.02!9.50!SOX11;;chr2:60780753..60780800,-!p1@BCL11A!1.01!46.85!BCL11A;;chr8:60031682..60031710,-!p2@TOX!1.01!15.07!TOX;;chr9:132427972..132428056,+!p1@PRRX2!1.01!12.23!PRRX2;;chr4:41750860..41750867,-!p8@PHOX2B!1.01!9.17!PHOX2B;;chr7:19157043..19157088,-!p2@TWIST1!1.00!23.26!TWIST1;;chr10:8100691..8100732,+!p5@GATA3!1.00!8.96!GATA3;;chr19:20188776..20188826,+!p1@ZNF90!0.99!24.14!ZNF90;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.89!ZNF662;;chr6:20402102..20402152,+!p1@E2F3!0.98!35.60!E2F3;;chr13:72441315..72441454,-!p1@DACH1!0.98!17.26!DACH1;;chr8:28748099..28748141,+!p2@HMBOX1!0.97!26.76!HMBOX1;;chr13:100638100..100638115,+!p4@ZIC2!0.97!8.41!ZIC2;;chr11:66188503..66188511,+!p1@NPAS4!0.97!8.30!NPAS4;;chr7:63505799..63505904,+!p1@ZNF727!0.96!8.08!ZNF727;;chr9:14314106..14314119,-!p5@NFIB!0.95!14.52!NFIB;;chr20:62795799..62795819,+!p1@MYT1!0.95!7.97!MYT1;;chr2:74740569..74740580,+!p4@TLX2!0.95!7.86!TLX2;;chr5:170736216..170736238,+!p2@TLX3!0.95!7.86!TLX3;;chr9:14313893..14313908,-!p7@NFIB!0.94!11.36!NFIB;;chr8:30890810..30890880,-!p1@PURG!0.94!7.75!PURG;;chr12:115121770..115121781,-!p4@TBX3!0.94!7.75!TBX3;;chr2:2328741..2328756,-!p8@MYT1L!0.94!7.75!MYT1L;;chr4:41750895..41750904,-!p6@PHOX2B!0.94!7.75!PHOX2B;;chr2:74726710..74726736,-!p3@LBX2!0.94!7.64!LBX2;;chr7:19185493..19185503,-!p2@FERD3L!0.94!7.64!FERD3L;;chr20:32274179..32274213,-!p1@E2F1!0.93!51.66!E2F1;;chr18:53257027..53257052,-!p3@TCF4!0.93!31.02!TCF4;;chr5:153857819..153857824,-!p3@HAND1!0.93!7.54!HAND1;;chr1:153940354..153940395,+!p1@CREB3L4!0.92!30.47!CREB3L4;;chr1:247171347..247171366,-!p2@ZNF695!0.92!13.65!ZNF695;;chr3:44626446..44626477,+!p1@ZNF660!0.92!13.54!ZNF660;;chrX:131624056..131624069,-!p2@MBNL3!0.92!10.05!MBNL3;;chr2:25475094..25475112,-!p3@DNMT3A!0.91!7.21!DNMT3A;;chr19:37096139..37096170,-!p2@ZNF529!0.90!20.20!ZNF529;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.83!KLF15;;chr19:9609247..9609262,-!p2@ZNF560!0.90!6.99!ZNF560;;chr17:41277372..41277418,-!p1@BRCA1!0.89!25.77!BRCA1;;chr9:128509663..128509715,+!p1@PBX3!0.89!24.03!PBX3;;chr19:38720294..38720348,-!p1@DPF1!0.89!8.63!DPF1;;chr19:57183114..57183145,-!p1@ZNF835!0.89!7.64!ZNF835;;chr19:24097675..24097699,+!p1@ZNF726!0.88!23.15!ZNF726;;chr19:57901326..57901385,+!p2@ZNF548!0.88!16.49!ZNF548;;chr2:71127699..71127744,+!p1@VAX2!0.88!13.87!VAX2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.66!ZNF177;;chr3:126076242..126076257,-!p1@KLF15!0.87!8.19!KLF15;;chr2:2335109..2335134,-!p2@MYT1L!0.87!6.33!MYT1L;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.15!CREB5;;chr10:44070016..44070069,-!p1@ZNF239!0.86!19.66!ZNF239;;chr8:80679993..80680011,-!p1@HEY1!0.86!9.17!HEY1;;chr4:8873716..8873738,-!p2@HMX1!0.86!6.22!HMX1;;chr19:53758058..53758088,-!p2@ZNF677!0.85!21.08!ZNF677;;chr9:114287433..114287513,+!p1@ZNF483!0.85!16.38!ZNF483;;chr19:56988677..56988729,-!p1@ZNF667!0.85!11.03!ZNF667;;chr8:60031762..60031803,-!p3@TOX!0.85!9.17!TOX;;chr6:108977520..108977534,+!p7@FOXO3!0.85!6.12!FOXO3;;chr1:43148625..43148710,+!p3@YBX1!0.84!11.03!YBX1;;chr5:178368186..178368238,+!p1@ZNF454!0.84!10.92!ZNF454;;chr19:44455368..44455396,+!p1@ZNF221!0.83!20.75!ZNF221;;chr12:133706820..133706881,-!p1@ZNF891!0.83!12.56!ZNF891;;chr6:31869828..31869880,-!p1@ZBTB12!0.83!11.25!ZBTB12;;chr19:11750566..11750627,+!p1@ZNF833P!0.83!7.97!ZNF833P;;chr19:38183138..38183157,-!p2@ZNF781!0.83!5.79!ZNF781;;chr1:214161619..214161629,+!p5@PROX1!0.83!5.79!PROX1;;chr2:45168959..45168990,+!p6@SIX3!0.83!5.79!SIX3;;chr19:9695169..9695188,-!p1@ZNF121!0.82!105.82!ZNF121;;chr5:176738887..176738934,-!p1@MXD3!0.82!40.63!MXD3;;chr2:60778035..60778060,-!p4@BCL11A!0.82!6.77!BCL11A;;chr3:52002412..52002433,-!p7@PCBP4!0.82!5.68!PCBP4;;chr13:37494275..37494304,-!p2@SMAD9!0.82!5.68!SMAD9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.82!5.57!HOXC5;;chr2:219850049..219850060,-!p8@FEV!0.82!5.57!FEV;;chr2:219850277..219850288,-!p9@FEV!0.82!5.57!FEV;;chr9:77112225..77112238,+!p2@RORB!0.81!5.46!RORB;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.46!TCF12;;chr19:20959098..20959117,+!p1@ZNF66P!0.80!23.70!ZNF66P;;chr19:22034809..22034878,-!p2@ZNF43!0.80!20.20!ZNF43;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.77!MEIS1;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.78!NR2F1;;chr6:50786057..50786069,+!p9@TFAP2B!0.80!5.35!TFAP2B;;chr13:37494248..37494260,-!p3@SMAD9!0.80!5.35!SMAD9;;chr3:141105235..141105307,+!p7@ZBTB38!0.80!5.35!ZBTB38;;chr16:67197334..67197362,+!p8@HSF4!0.80!5.24!HSF4;;chr10:111967345..111967422,+!p1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+|ffid_belonging_in_development=CL:0000133,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:0100932
 |fonse_cell_line_closure=FF:0100932
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10555-107I6
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100932
+|is_a=EFO:0002091;;FF:0000210;;FF:0100932
+|is_obsolete=
+|library_id=CNhs11811
+|library_id_phase_based=2:CNhs11811
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10555
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10555
 |name=neuroblastoma cell line:NH-12
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11811,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=107
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=64.46405
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB2108
 |sample_cell_line=NH-12
@@ Line 69: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.91577066284694e-294!GO:0043231;intracellular membrane-bound organelle;1.30012743753678e-265!GO:0043227;membrane-bound organelle;2.7213893757283e-265!GO:0043226;organelle;2.18886850933036e-264!GO:0043229;intracellular organelle;6.09366679882458e-264!GO:0005634;nucleus;9.8888545331825e-161!GO:0044422;organelle part;1.13359606727945e-152!GO:0044446;intracellular organelle part;1.0750679745372e-151!GO:0005737;cytoplasm;2.08967299280798e-136!GO:0044237;cellular metabolic process;9.53900294643722e-117!GO:0044238;primary metabolic process;1.06819421319641e-115!GO:0043170;macromolecule metabolic process;2.0069598498937e-114!GO:0032991;macromolecular complex;1.85783383510882e-111!GO:0044428;nuclear part;3.83119740377171e-99!GO:0030529;ribonucleoprotein complex;2.96864420023052e-98!GO:0003723;RNA binding;1.89994254312267e-97!GO:0044444;cytoplasmic part;8.03026383890327e-97!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.21216189678782e-94!GO:0043283;biopolymer metabolic process;1.48275301764047e-91!GO:0010467;gene expression;1.97843250916472e-89!GO:0043233;organelle lumen;1.51202651388129e-88!GO:0031974;membrane-enclosed lumen;1.51202651388129e-88!GO:0003676;nucleic acid binding;6.59531897277989e-78!GO:0006396;RNA processing;5.83836430380634e-67!GO:0005739;mitochondrion;2.35065821424748e-60!GO:0031981;nuclear lumen;8.76593977426619e-60!GO:0016070;RNA metabolic process;5.10845120297716e-56!GO:0005840;ribosome;3.18307657032826e-55!GO:0043234;protein complex;4.13599935304086e-55!GO:0005515;protein binding;1.71951054446245e-54!GO:0016043;cellular component organization and biogenesis;7.93476062520511e-53!GO:0006259;DNA metabolic process;1.69695682554435e-50!GO:0016071;mRNA metabolic process;1.4530766625193e-49!GO:0006412;translation;1.67207975767291e-48!GO:0003735;structural constituent of ribosome;1.99777747058095e-47!GO:0006996;organelle organization and biogenesis;2.90959775953586e-45!GO:0008380;RNA splicing;3.05869554038213e-45!GO:0006397;mRNA processing;9.48723657484243e-44!GO:0033279;ribosomal subunit;1.81511735691798e-42!GO:0043228;non-membrane-bound organelle;2.40192872455926e-42!GO:0043232;intracellular non-membrane-bound organelle;2.40192872455926e-42!GO:0044429;mitochondrial part;1.23151190475262e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.57972885378815e-39!GO:0031975;envelope;1.66835198126046e-38!GO:0031967;organelle envelope;2.78596048939578e-38!GO:0031090;organelle membrane;7.04052464849654e-36!GO:0044249;cellular biosynthetic process;1.12438709998413e-35!GO:0015031;protein transport;1.20240858371427e-35!GO:0019538;protein metabolic process;2.86451537054266e-35!GO:0033036;macromolecule localization;4.06819151560191e-35!GO:0005654;nucleoplasm;8.309940690213e-35!GO:0065003;macromolecular complex assembly;1.51760779051583e-34!GO:0009059;macromolecule biosynthetic process;3.69611733583076e-34!GO:0009058;biosynthetic process;2.32896187352813e-33!GO:0044267;cellular protein metabolic process;3.92593951969163e-33!GO:0044260;cellular macromolecule metabolic process;2.92106960395138e-32!GO:0005681;spliceosome;6.96550127774613e-32!GO:0046907;intracellular transport;7.32308197383752e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.51764853039604e-32!GO:0007049;cell cycle;3.78845348300234e-31!GO:0045184;establishment of protein localization;5.12191978557116e-31!GO:0022607;cellular component assembly;5.19178644005147e-31!GO:0000166;nucleotide binding;5.19989205328889e-31!GO:0008104;protein localization;8.43799388744998e-31!GO:0005694;chromosome;6.30322669832034e-30!GO:0005829;cytosol;2.38653026606579e-28!GO:0006974;response to DNA damage stimulus;9.0400680455491e-28!GO:0051276;chromosome organization and biogenesis;1.31657155685429e-27!GO:0044451;nucleoplasm part;1.65940646683895e-27!GO:0005730;nucleolus;6.42080757290653e-26!GO:0044427;chromosomal part;1.17262298411905e-25!GO:0044445;cytosolic part;1.890939406221e-25!GO:0005740;mitochondrial envelope;3.83218812265787e-25!GO:0006281;DNA repair;4.53469901295933e-25!GO:0006886;intracellular protein transport;4.57867035763683e-25!GO:0016462;pyrophosphatase activity;4.33605606421745e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.61968522384777e-24!GO:0019866;organelle inner membrane;7.32517813532637e-24!GO:0051649;establishment of cellular localization;7.38555125560132e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;9.03759740552895e-24!GO:0031966;mitochondrial membrane;9.77693541251468e-24!GO:0017111;nucleoside-triphosphatase activity;1.80953094212223e-23!GO:0051641;cellular localization;2.65625157464912e-23!GO:0022402;cell cycle process;3.53091107989696e-23!GO:0000278;mitotic cell cycle;3.6585151414633e-23!GO:0015935;small ribosomal subunit;2.75928023009304e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;2.83972339977742e-22!GO:0005743;mitochondrial inner membrane;7.68610916602771e-22!GO:0022618;protein-RNA complex assembly;1.28762364863939e-21!GO:0015934;large ribosomal subunit;2.46232878644478e-21!GO:0006323;DNA packaging;2.96830557065763e-21!GO:0031980;mitochondrial lumen;1.58273843769125e-20!GO:0005759;mitochondrial matrix;1.58273843769125e-20!GO:0006119;oxidative phosphorylation;1.67905566984445e-20!GO:0032553;ribonucleotide binding;3.23093156237264e-20!GO:0032555;purine ribonucleotide binding;3.23093156237264e-20!GO:0016874;ligase activity;4.40094976762338e-20!GO:0044455;mitochondrial membrane part;6.93729607314628e-20!GO:0006260;DNA replication;7.69773299971868e-20!GO:0019222;regulation of metabolic process;9.45440724188613e-20!GO:0009719;response to endogenous stimulus;4.40689749123761e-19!GO:0006457;protein folding;5.9932061059365e-19!GO:0006350;transcription;7.16189298960555e-19!GO:0008135;translation factor activity, nucleic acid binding;8.02068726994177e-19!GO:0006512;ubiquitin cycle;8.5397225829207e-19!GO:0017076;purine nucleotide binding;9.76177705977567e-19!GO:0042254;ribosome biogenesis and assembly;2.28315642547065e-18!GO:0008134;transcription factor binding;5.09404385392091e-18!GO:0022403;cell cycle phase;5.09404385392091e-18!GO:0000087;M phase of mitotic cell cycle;5.58250330295175e-18!GO:0007067;mitosis;1.21445926330045e-17!GO:0005524;ATP binding;4.29616024716989e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.34948378167829e-17!GO:0032559;adenyl ribonucleotide binding;4.67012598803041e-17!GO:0031323;regulation of cellular metabolic process;7.56583821397093e-17!GO:0004386;helicase activity;8.04990457962094e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;8.82414591502222e-17!GO:0000375;RNA splicing, via transesterification reactions;8.82414591502222e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.82414591502222e-17!GO:0003677;DNA binding;2.33803039524828e-16!GO:0051301;cell division;2.48444987906321e-16!GO:0050794;regulation of cellular process;4.54071806546053e-16!GO:0005746;mitochondrial respiratory chain;4.90995170751152e-16!GO:0042623;ATPase activity, coupled;5.77207651285024e-16!GO:0032774;RNA biosynthetic process;6.095542537989e-16!GO:0006351;transcription, DNA-dependent;9.92447927313603e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.19406232337496e-15!GO:0016887;ATPase activity;1.32305364350464e-15!GO:0006333;chromatin assembly or disassembly;1.56680187684348e-15!GO:0010468;regulation of gene expression;1.56680187684348e-15!GO:0031965;nuclear membrane;1.85812387794533e-15!GO:0030554;adenyl nucleotide binding;1.93623934885362e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.29044914901556e-15!GO:0065004;protein-DNA complex assembly;2.38804370045425e-15!GO:0016568;chromatin modification;4.99833911746768e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.94583793923814e-15!GO:0003954;NADH dehydrogenase activity;7.94583793923814e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.94583793923814e-15!GO:0000279;M phase;8.49691165921481e-15!GO:0005761;mitochondrial ribosome;1.37680781469464e-14!GO:0000313;organellar ribosome;1.37680781469464e-14!GO:0000785;chromatin;1.71875982930193e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.91015024888366e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.05305007064176e-14!GO:0005635;nuclear envelope;2.67464086409574e-14!GO:0012505;endomembrane system;3.03988655295394e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.41641485769297e-14!GO:0019941;modification-dependent protein catabolic process;5.17512151543295e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.17512151543295e-14!GO:0044453;nuclear membrane part;7.6014695357196e-14!GO:0045449;regulation of transcription;7.64706475909066e-14!GO:0008026;ATP-dependent helicase activity;1.03067227776954e-13!GO:0044265;cellular macromolecule catabolic process;1.13657197628824e-13!GO:0044257;cellular protein catabolic process;1.20657813172414e-13!GO:0006413;translational initiation;1.72713677139242e-13!GO:0003743;translation initiation factor activity;1.76486248871825e-13!GO:0015630;microtubule cytoskeleton;2.05180567773349e-13!GO:0006403;RNA localization;2.59189292157837e-13!GO:0005643;nuclear pore;2.83980500927929e-13!GO:0051082;unfolded protein binding;2.95026633592335e-13!GO:0016604;nuclear body;3.04341215253651e-13!GO:0006399;tRNA metabolic process;3.7733829543999e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.48601723004516e-13!GO:0042773;ATP synthesis coupled electron transport;4.48601723004516e-13!GO:0050657;nucleic acid transport;5.76656302954588e-13!GO:0051236;establishment of RNA localization;5.76656302954588e-13!GO:0050658;RNA transport;5.76656302954588e-13!GO:0043412;biopolymer modification;5.95603670967602e-13!GO:0006364;rRNA processing;6.76730435260307e-13!GO:0006605;protein targeting;7.04876747042152e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.13579262930304e-13!GO:0045271;respiratory chain complex I;8.13579262930304e-13!GO:0005747;mitochondrial respiratory chain complex I;8.13579262930304e-13!GO:0006355;regulation of transcription, DNA-dependent;1.36140646477051e-12!GO:0016072;rRNA metabolic process;1.97050633133371e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.38379930536161e-12!GO:0048770;pigment granule;2.47017479630393e-12!GO:0042470;melanosome;2.47017479630393e-12!GO:0003712;transcription cofactor activity;5.71988517393522e-12!GO:0050789;regulation of biological process;7.90682383172871e-12!GO:0043285;biopolymer catabolic process;8.40369518984004e-12!GO:0005794;Golgi apparatus;9.02853868571759e-12!GO:0043566;structure-specific DNA binding;1.0547035212436e-11!GO:0006446;regulation of translational initiation;1.60975393726021e-11!GO:0065002;intracellular protein transport across a membrane;3.59922620064422e-11!GO:0000502;proteasome complex (sensu Eukaryota);3.88115721032581e-11!GO:0003697;single-stranded DNA binding;5.84563391838668e-11!GO:0051726;regulation of cell cycle;6.5834918863665e-11!GO:0006334;nucleosome assembly;6.92077636102125e-11!GO:0006464;protein modification process;8.15373343267124e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.8857507378467e-11!GO:0009057;macromolecule catabolic process;9.22525825108403e-11!GO:0008565;protein transporter activity;9.46334666856823e-11!GO:0051028;mRNA transport;9.72627312166919e-11!GO:0000074;regulation of progression through cell cycle;1.03561949787509e-10!GO:0016607;nuclear speck;1.04208991186607e-10!GO:0031497;chromatin assembly;1.25965726516325e-10!GO:0030163;protein catabolic process;1.34000380408629e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76788693454535e-10!GO:0046930;pore complex;2.35107849071577e-10!GO:0006913;nucleocytoplasmic transport;2.56968364975328e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.5654818828685e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.5654818828685e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.5654818828685e-10!GO:0044248;cellular catabolic process;5.57914508842633e-10!GO:0043038;amino acid activation;6.01814815558904e-10!GO:0006418;tRNA aminoacylation for protein translation;6.01814815558904e-10!GO:0043039;tRNA aminoacylation;6.01814815558904e-10!GO:0051169;nuclear transport;7.60521624375753e-10!GO:0048193;Golgi vesicle transport;7.9854073030006e-10!GO:0030532;small nuclear ribonucleoprotein complex;8.34748116854191e-10!GO:0043687;post-translational protein modification;1.04217893312657e-09!GO:0000775;chromosome, pericentric region;1.10393434393923e-09!GO:0008270;zinc ion binding;1.11628647204741e-09!GO:0006261;DNA-dependent DNA replication;1.76549498659948e-09!GO:0006163;purine nucleotide metabolic process;4.34333982849235e-09!GO:0016779;nucleotidyltransferase activity;5.62353520140254e-09!GO:0006366;transcription from RNA polymerase II promoter;6.65785522303229e-09!GO:0009259;ribonucleotide metabolic process;6.99559062095542e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.01137312582037e-08!GO:0051186;cofactor metabolic process;1.16368855876704e-08!GO:0005819;spindle;1.19909899159492e-08!GO:0006164;purine nucleotide biosynthetic process;1.23414842362097e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.35240169107915e-08!GO:0005667;transcription factor complex;2.01186984654828e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.82620804537101e-08!GO:0016192;vesicle-mediated transport;2.83363137374631e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.06800180420246e-08!GO:0009150;purine ribonucleotide metabolic process;5.54221820745871e-08!GO:0009260;ribonucleotide biosynthetic process;5.73498383947611e-08!GO:0008639;small protein conjugating enzyme activity;6.73015793509515e-08!GO:0019829;cation-transporting ATPase activity;8.35325564421808e-08!GO:0004842;ubiquitin-protein ligase activity;9.26904493058912e-08!GO:0000245;spliceosome assembly;9.28047981879428e-08!GO:0017038;protein import;9.65818608917734e-08!GO:0019787;small conjugating protein ligase activity;1.21505146568267e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.63046424151145e-07!GO:0008094;DNA-dependent ATPase activity;1.85560430289669e-07!GO:0003899;DNA-directed RNA polymerase activity;2.00866332865706e-07!GO:0046914;transition metal ion binding;2.10431240263209e-07!GO:0007005;mitochondrion organization and biogenesis;2.57496860212422e-07!GO:0044432;endoplasmic reticulum part;2.60429833540701e-07!GO:0005783;endoplasmic reticulum;2.60429833540701e-07!GO:0032446;protein modification by small protein conjugation;2.69609645462e-07!GO:0005874;microtubule;2.89241326778977e-07!GO:0006732;coenzyme metabolic process;3.74010360633331e-07!GO:0005813;centrosome;3.85845432281111e-07!GO:0007017;microtubule-based process;4.85099327819142e-07!GO:0015986;ATP synthesis coupled proton transport;5.39215381673093e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.39215381673093e-07!GO:0016363;nuclear matrix;5.76153638703467e-07!GO:0051329;interphase of mitotic cell cycle;6.03520334337628e-07!GO:0016567;protein ubiquitination;6.39041345838842e-07!GO:0045259;proton-transporting ATP synthase complex;6.55670113794915e-07!GO:0051427;hormone receptor binding;6.62317278765362e-07!GO:0009141;nucleoside triphosphate metabolic process;6.62317278765362e-07!GO:0016881;acid-amino acid ligase activity;7.0936706555691e-07!GO:0003724;RNA helicase activity;7.35795581613374e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.41137686537064e-07!GO:0043623;cellular protein complex assembly;7.53871101168932e-07!GO:0003690;double-stranded DNA binding;7.61398941273393e-07!GO:0016564;transcription repressor activity;8.81638344129684e-07!GO:0016740;transferase activity;9.47861794526344e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.01379815823605e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.01379815823605e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.07929424783672e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.07929424783672e-06!GO:0005657;replication fork;1.13035617962513e-06!GO:0005815;microtubule organizing center;1.15033204339077e-06!GO:0003713;transcription coactivator activity;1.36057776453105e-06!GO:0008168;methyltransferase activity;1.37003515082859e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.49487616832058e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.49487616832058e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.50950068208696e-06!GO:0035257;nuclear hormone receptor binding;1.61075023000625e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.64737147046282e-06!GO:0000075;cell cycle checkpoint;1.75971565872748e-06!GO:0005793;ER-Golgi intermediate compartment;1.7846505377645e-06!GO:0007051;spindle organization and biogenesis;1.79958610928978e-06!GO:0045333;cellular respiration;1.97592446336024e-06!GO:0051188;cofactor biosynthetic process;2.1177252772146e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.17778041886395e-06!GO:0009060;aerobic respiration;2.27981244936313e-06!GO:0006461;protein complex assembly;2.93565782169103e-06!GO:0009055;electron carrier activity;3.0279403232334e-06!GO:0044431;Golgi apparatus part;3.20588673121312e-06!GO:0000151;ubiquitin ligase complex;3.37592948166332e-06!GO:0048475;coated membrane;3.37860483690973e-06!GO:0030117;membrane coat;3.37860483690973e-06!GO:0051325;interphase;3.46255549291407e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.58799097509288e-06!GO:0046034;ATP metabolic process;4.281469049904e-06!GO:0006754;ATP biosynthetic process;5.23054031236999e-06!GO:0006753;nucleoside phosphate metabolic process;5.23054031236999e-06!GO:0015631;tubulin binding;5.23054031236999e-06!GO:0005762;mitochondrial large ribosomal subunit;5.50516679699261e-06!GO:0000315;organellar large ribosomal subunit;5.50516679699261e-06!GO:0003682;chromatin binding;5.69588594253324e-06!GO:0031988;membrane-bound vesicle;6.1374355575726e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.68302800098028e-06!GO:0003924;GTPase activity;7.2579156289696e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.737635123448e-06!GO:0003729;mRNA binding;9.24094575644498e-06!GO:0051168;nuclear export;9.83036384380766e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.11155607333293e-05!GO:0044452;nucleolar part;1.16702123124337e-05!GO:0065007;biological regulation;1.23422759989394e-05!GO:0003714;transcription corepressor activity;1.26354896538554e-05!GO:0006752;group transfer coenzyme metabolic process;1.30864979571384e-05!GO:0003684;damaged DNA binding;1.37551650823391e-05!GO:0006302;double-strand break repair;1.63846069282661e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.78048404761739e-05!GO:0006383;transcription from RNA polymerase III promoter;1.93730462432638e-05!GO:0031324;negative regulation of cellular metabolic process;2.22085132801483e-05!GO:0016563;transcription activator activity;2.59830245311793e-05!GO:0003678;DNA helicase activity;2.90677282999446e-05!GO:0031982;vesicle;3.10562957849784e-05!GO:0009108;coenzyme biosynthetic process;3.13905078221525e-05!GO:0000059;protein import into nucleus, docking;3.40616059591673e-05!GO:0000776;kinetochore;3.57671908072475e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.75515548949299e-05!GO:0000786;nucleosome;3.75515548949299e-05!GO:0031410;cytoplasmic vesicle;3.89171669387984e-05!GO:0007059;chromosome segregation;4.46269201815766e-05!GO:0016859;cis-trans isomerase activity;4.60997283421794e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71890140045222e-05!GO:0043681;protein import into mitochondrion;4.71890140045222e-05!GO:0006352;transcription initiation;4.74190004209063e-05!GO:0006414;translational elongation;4.74190004209063e-05!GO:0000314;organellar small ribosomal subunit;4.7648776995885e-05!GO:0005763;mitochondrial small ribosomal subunit;4.7648776995885e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.04484578930381e-05!GO:0009117;nucleotide metabolic process;5.21148547127103e-05!GO:0008186;RNA-dependent ATPase activity;5.35956923638634e-05!GO:0006310;DNA recombination;5.55694457989776e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.67868799445435e-05!GO:0006613;cotranslational protein targeting to membrane;6.62691249302656e-05!GO:0051052;regulation of DNA metabolic process;7.00686051815272e-05!GO:0008033;tRNA processing;7.48727632266846e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.60379416769133e-05!GO:0048471;perinuclear region of cytoplasm;8.32716251808051e-05!GO:0004527;exonuclease activity;8.41792164762523e-05!GO:0006839;mitochondrial transport;8.4792498621128e-05!GO:0005525;GTP binding;8.54216203971788e-05!GO:0005789;endoplasmic reticulum membrane;8.5704774088598e-05!GO:0043021;ribonucleoprotein binding;8.81291439855925e-05!GO:0009892;negative regulation of metabolic process;8.81291439855925e-05!GO:0030120;vesicle coat;8.81291439855925e-05!GO:0030662;coated vesicle membrane;8.81291439855925e-05!GO:0006793;phosphorus metabolic process;0.000100285328901949!GO:0006796;phosphate metabolic process;0.000100285328901949!GO:0045045;secretory pathway;0.000110693283273492!GO:0000139;Golgi membrane;0.000119397458171679!GO:0006099;tricarboxylic acid cycle;0.000125526603857977!GO:0046356;acetyl-CoA catabolic process;0.000125526603857977!GO:0006338;chromatin remodeling;0.000125588393816212!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000126144139327!GO:0006606;protein import into nucleus;0.000129021001104152!GO:0051170;nuclear import;0.000134109466619752!GO:0006084;acetyl-CoA metabolic process;0.000155144602039558!GO:0009056;catabolic process;0.000163837065272902!GO:0004004;ATP-dependent RNA helicase activity;0.000167773089761144!GO:0000228;nuclear chromosome;0.000171051668626143!GO:0051087;chaperone binding;0.000171051668626143!GO:0016853;isomerase activity;0.000177088564026711!GO:0005788;endoplasmic reticulum lumen;0.000179495684929813!GO:0019899;enzyme binding;0.000188268456870957!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000201753922831609!GO:0032508;DNA duplex unwinding;0.00020417467349031!GO:0032392;DNA geometric change;0.00020417467349031!GO:0031072;heat shock protein binding;0.000215862721696741!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000227377816882125!GO:0008017;microtubule binding;0.000235710957558545!GO:0007010;cytoskeleton organization and biogenesis;0.000236823526739913!GO:0051246;regulation of protein metabolic process;0.000244711461352489!GO:0000792;heterochromatin;0.000249080819227365!GO:0005798;Golgi-associated vesicle;0.000274822352970463!GO:0045786;negative regulation of progression through cell cycle;0.00028536773770163!GO:0006626;protein targeting to mitochondrion;0.000298810585832114!GO:0030880;RNA polymerase complex;0.00031421030302592!GO:0016481;negative regulation of transcription;0.000315962879477248!GO:0009109;coenzyme catabolic process;0.000365607807151273!GO:0007052;mitotic spindle organization and biogenesis;0.000377079762370518!GO:0005876;spindle microtubule;0.000424737553102255!GO:0003746;translation elongation factor activity;0.00043832880288901!GO:0005839;proteasome core complex (sensu Eukaryota);0.000482447702687803!GO:0008276;protein methyltransferase activity;0.000488798372028663!GO:0035258;steroid hormone receptor binding;0.000489017503690436!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000498738345083771!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000501337729546377!GO:0019843;rRNA binding;0.000575811549008874!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000599355308967237!GO:0006268;DNA unwinding during replication;0.000630002461457667!GO:0006289;nucleotide-excision repair;0.000665260531170176!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000668735051615771!GO:0004518;nuclease activity;0.000690275017960197!GO:0032259;methylation;0.000690275017960197!GO:0000049;tRNA binding;0.000743708062442901!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000761809916559946!GO:0000428;DNA-directed RNA polymerase complex;0.000761809916559946!GO:0000922;spindle pole;0.000763206672080881!GO:0030521;androgen receptor signaling pathway;0.000790158511796256!GO:0032200;telomere organization and biogenesis;0.000800516659384121!GO:0000723;telomere maintenance;0.000800516659384121!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000804925049068631!GO:0006284;base-excision repair;0.000834896071886271!GO:0016787;hydrolase activity;0.000853049034116556!GO:0032561;guanyl ribonucleotide binding;0.000853049034116556!GO:0019001;guanyl nucleotide binding;0.000853049034116556!GO:0006405;RNA export from nucleus;0.000857059653865477!GO:0016251;general RNA polymerase II transcription factor activity;0.000868696267729131!GO:0007006;mitochondrial membrane organization and biogenesis;0.000868696267729131!GO:0005684;U2-dependent spliceosome;0.000907277127243884!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00098385092862749!GO:0016310;phosphorylation;0.00102572156133566!GO:0008250;oligosaccharyl transferase complex;0.00106778232661403!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00108564642479917!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00108564642479917!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00108564642479917!GO:0000082;G1/S transition of mitotic cell cycle;0.00108686345996678!GO:0007093;mitotic cell cycle checkpoint;0.00112293694973283!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00114656295362828!GO:0048523;negative regulation of cellular process;0.00116448498976956!GO:0051920;peroxiredoxin activity;0.00116448498976956!GO:0005768;endosome;0.00117938769395064!GO:0004576;oligosaccharyl transferase activity;0.00118716102330818!GO:0051187;cofactor catabolic process;0.00129063974030626!GO:0051539;4 iron, 4 sulfur cluster binding;0.00140355872372564!GO:0008022;protein C-terminus binding;0.00144565185815456!GO:0005048;signal sequence binding;0.00150186522820217!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00150711147810322!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00155378091723646!GO:0015399;primary active transmembrane transporter activity;0.00155378091723646!GO:0004298;threonine endopeptidase activity;0.0015771434683327!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00160191634774173!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00160191634774173!GO:0040029;regulation of gene expression, epigenetic;0.00169313638016479!GO:0005875;microtubule associated complex;0.00171301698234017!GO:0007088;regulation of mitosis;0.00173294199506869!GO:0009116;nucleoside metabolic process;0.00178634667710712!GO:0006611;protein export from nucleus;0.00180246376154536!GO:0044440;endosomal part;0.0019065607324397!GO:0010008;endosome membrane;0.0019065607324397!GO:0004674;protein serine/threonine kinase activity;0.00200686506863169!GO:0030135;coated vesicle;0.00219735240811756!GO:0043414;biopolymer methylation;0.00220243219508341!GO:0005770;late endosome;0.00220650949782597!GO:0009165;nucleotide biosynthetic process;0.00228687230977908!GO:0051789;response to protein stimulus;0.00244160468334706!GO:0006986;response to unfolded protein;0.00244160468334706!GO:0008654;phospholipid biosynthetic process;0.00256292478265652!GO:0007004;telomere maintenance via telomerase;0.00258573523583183!GO:0044450;microtubule organizing center part;0.00262027532192013!GO:0003702;RNA polymerase II transcription factor activity;0.00273011436030358!GO:0000118;histone deacetylase complex;0.00289633556596935!GO:0031124;mRNA 3'-end processing;0.00301703209657217!GO:0045454;cell redox homeostasis;0.00305077101775034!GO:0006612;protein targeting to membrane;0.00325140651439172!GO:0016584;nucleosome positioning;0.0032822108466722!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0035037249290512!GO:0031570;DNA integrity checkpoint;0.0035037249290512!GO:0009112;nucleobase metabolic process;0.00360637833372721!GO:0005741;mitochondrial outer membrane;0.00363536210299639!GO:0007569;cell aging;0.00363536210299639!GO:0030518;steroid hormone receptor signaling pathway;0.00375143166411661!GO:0008139;nuclear localization sequence binding;0.00384551060320758!GO:0006378;mRNA polyadenylation;0.00401400930516941!GO:0043596;nuclear replication fork;0.00402078957583135!GO:0000781;chromosome, telomeric region;0.00404465087474061!GO:0000178;exosome (RNase complex);0.00404991526755177!GO:0000725;recombinational repair;0.00412232832647591!GO:0000724;double-strand break repair via homologous recombination;0.00412232832647591!GO:0000209;protein polyubiquitination;0.00417107705503819!GO:0042393;histone binding;0.00420535012050718!GO:0008287;protein serine/threonine phosphatase complex;0.0042259780177452!GO:0005637;nuclear inner membrane;0.00428959778652966!GO:0044454;nuclear chromosome part;0.00431864693868763!GO:0006275;regulation of DNA replication;0.00463761352908488!GO:0048500;signal recognition particle;0.00480239431041309!GO:0030118;clathrin coat;0.00485118712662685!GO:0003711;transcription elongation regulator activity;0.00493207431136743!GO:0006270;DNA replication initiation;0.00502211738135386!GO:0012501;programmed cell death;0.00507433718746936!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00509017313592083!GO:0048487;beta-tubulin binding;0.00512792239437589!GO:0016272;prefoldin complex;0.00530773686320988!GO:0000287;magnesium ion binding;0.00558323402954545!GO:0031968;organelle outer membrane;0.00564396304005178!GO:0006595;polyamine metabolic process;0.0057064153016642!GO:0007018;microtubule-based movement;0.00579237718900799!GO:0006144;purine base metabolic process;0.00583055002228378!GO:0009303;rRNA transcription;0.00584357875433564!GO:0018196;peptidyl-asparagine modification;0.0059365403970323!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0059365403970323!GO:0046489;phosphoinositide biosynthetic process;0.00594650654032489!GO:0008312;7S RNA binding;0.0059935070059215!GO:0006400;tRNA modification;0.00599942876095024!GO:0006402;mRNA catabolic process;0.00601606190745761!GO:0006915;apoptosis;0.00612065828618036!GO:0033116;ER-Golgi intermediate compartment membrane;0.00612065828618036!GO:0008652;amino acid biosynthetic process;0.00612065828618036!GO:0051287;NAD binding;0.00624547070823685!GO:0008408;3'-5' exonuclease activity;0.00642030467629081!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0064494693551279!GO:0019867;outer membrane;0.00652307467872485!GO:0004003;ATP-dependent DNA helicase activity;0.00653848067129091!GO:0045892;negative regulation of transcription, DNA-dependent;0.00679100131896669!GO:0043022;ribosome binding;0.0068177193105664!GO:0006278;RNA-dependent DNA replication;0.00697366327587214!GO:0005869;dynactin complex;0.00725813104244723!GO:0006401;RNA catabolic process;0.00738516991358773!GO:0046474;glycerophospholipid biosynthetic process;0.00741677846809754!GO:0042054;histone methyltransferase activity;0.00770274370108248!GO:0005669;transcription factor TFIID complex;0.00773583273160131!GO:0000910;cytokinesis;0.00775587260557838!GO:0046112;nucleobase biosynthetic process;0.00789518813144435!GO:0016569;covalent chromatin modification;0.00814049945394473!GO:0005832;chaperonin-containing T-complex;0.00827102820302343!GO:0030134;ER to Golgi transport vesicle;0.00829714756340938!GO:0043284;biopolymer biosynthetic process;0.00886003056928507!GO:0005905;coated pit;0.00887703098085096!GO:0046128;purine ribonucleoside metabolic process;0.00898468040408996!GO:0042278;purine nucleoside metabolic process;0.00898468040408996!GO:0019783;small conjugating protein-specific protease activity;0.00900672797324257!GO:0030145;manganese ion binding;0.00906591897664549!GO:0050681;androgen receptor binding;0.00906877042996035!GO:0004532;exoribonuclease activity;0.00921955502271627!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00921955502271627!GO:0030127;COPII vesicle coat;0.00922765143102383!GO:0012507;ER to Golgi transport vesicle membrane;0.00922765143102383!GO:0031123;RNA 3'-end processing;0.00943181784606757!GO:0030137;COPI-coated vesicle;0.00951800709880819!GO:0033673;negative regulation of kinase activity;0.00955906774925023!GO:0006469;negative regulation of protein kinase activity;0.00955906774925023!GO:0008180;signalosome;0.00960128742122738!GO:0000819;sister chromatid segregation;0.010110266794135!GO:0009451;RNA modification;0.0101354232364298!GO:0032984;macromolecular complex disassembly;0.0102784649449214!GO:0006891;intra-Golgi vesicle-mediated transport;0.0102895457610585!GO:0006818;hydrogen transport;0.0103517886775203!GO:0016279;protein-lysine N-methyltransferase activity;0.0107026344485314!GO:0018024;histone-lysine N-methyltransferase activity;0.0107026344485314!GO:0016278;lysine N-methyltransferase activity;0.0107026344485314!GO:0000790;nuclear chromatin;0.0107950328594924!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0108079313275319!GO:0015992;proton transport;0.0111826581722967!GO:0004843;ubiquitin-specific protease activity;0.011235192756941!GO:0043492;ATPase activity, coupled to movement of substances;0.0117256075917649!GO:0046966;thyroid hormone receptor binding;0.0117476611946176!GO:0051348;negative regulation of transferase activity;0.0118760290083712!GO:0008170;N-methyltransferase activity;0.0124813694418582!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.012589972403219!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0130073311328292!GO:0000339;RNA cap binding;0.0130073311328292!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0132779736036914!GO:0004722;protein serine/threonine phosphatase activity;0.0135139503898658!GO:0006916;anti-apoptosis;0.0138176824909779!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0138176824909779!GO:0045047;protein targeting to ER;0.0138176824909779!GO:0000077;DNA damage checkpoint;0.0138279023667002!GO:0008097;5S rRNA binding;0.0138279023667002!GO:0000930;gamma-tubulin complex;0.0139543826868332!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0140645834833779!GO:0043601;nuclear replisome;0.0143765497354917!GO:0030894;replisome;0.0143765497354917!GO:0030522;intracellular receptor-mediated signaling pathway;0.0145476157334128!GO:0035267;NuA4 histone acetyltransferase complex;0.0147966964824364!GO:0004221;ubiquitin thiolesterase activity;0.0148431052165899!GO:0003730;mRNA 3'-UTR binding;0.0151662009097848!GO:0043407;negative regulation of MAP kinase activity;0.0151716255687093!GO:0006520;amino acid metabolic process;0.015310553887637!GO:0000070;mitotic sister chromatid segregation;0.0153992670609636!GO:0019238;cyclohydrolase activity;0.0157407860501444!GO:0007021;tubulin folding;0.0162172732020917!GO:0006376;mRNA splice site selection;0.0165976876444179!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0165976876444179!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0166334596613104!GO:0043241;protein complex disassembly;0.0167056362896941!GO:0043624;cellular protein complex disassembly;0.0168597017618246!GO:0005663;DNA replication factor C complex;0.0169851239364056!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0174847608888953!GO:0015002;heme-copper terminal oxidase activity;0.0174847608888953!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0174847608888953!GO:0004129;cytochrome-c oxidase activity;0.0174847608888953!GO:0008219;cell death;0.0175117068135146!GO:0016265;death;0.0175117068135146!GO:0004523;ribonuclease H activity;0.018184449534491!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0182027352914683!GO:0048519;negative regulation of biological process;0.0182027352914683!GO:0030176;integral to endoplasmic reticulum membrane;0.0182027352914683!GO:0006220;pyrimidine nucleotide metabolic process;0.0184339595133512!GO:0030663;COPI coated vesicle membrane;0.0184576761667123!GO:0030126;COPI vesicle coat;0.0184576761667123!GO:0005758;mitochondrial intermembrane space;0.0189084968608667!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0192370758038382!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0194122380507437!GO:0045039;protein import into mitochondrial inner membrane;0.0194122380507437!GO:0007019;microtubule depolymerization;0.0195953953683173!GO:0030867;rough endoplasmic reticulum membrane;0.019836167621988!GO:0000096;sulfur amino acid metabolic process;0.0208894434837395!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0209294095750096!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0211359574240572!GO:0051053;negative regulation of DNA metabolic process;0.0215069639405994!GO:0031970;organelle envelope lumen;0.0216260787323513!GO:0006730;one-carbon compound metabolic process;0.0219213516181124!GO:0031252;leading edge;0.0225204024816462!GO:0006301;postreplication repair;0.0230057574248474!GO:0016585;chromatin remodeling complex;0.0235474129732411!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0236301228741096!GO:0005732;small nucleolar ribonucleoprotein complex;0.023867067198121!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0239725560624594!GO:0006541;glutamine metabolic process;0.0240888536186146!GO:0015980;energy derivation by oxidation of organic compounds;0.024202958004057!GO:0007050;cell cycle arrest;0.024603029182439!GO:0003725;double-stranded RNA binding;0.0250927629665149!GO:0043631;RNA polyadenylation;0.0254302524872429!GO:0005881;cytoplasmic microtubule;0.0258214788386871!GO:0005885;Arp2/3 protein complex;0.0259429579883183!GO:0042770;DNA damage response, signal transduction;0.0259429579883183!GO:0016311;dephosphorylation;0.0259429579883183!GO:0043189;H4/H2A histone acetyltransferase complex;0.0262972273599548!GO:0046467;membrane lipid biosynthetic process;0.0265056820946342!GO:0016570;histone modification;0.026557218927911!GO:0017134;fibroblast growth factor binding;0.026557218927911!GO:0043069;negative regulation of programmed cell death;0.0267557085811988!GO:0051252;regulation of RNA metabolic process;0.0275296188921022!GO:0000726;non-recombinational repair;0.0277775536381718!GO:0000152;nuclear ubiquitin ligase complex;0.0279927077498543!GO:0016790;thiolester hydrolase activity;0.028007569865814!GO:0000175;3'-5'-exoribonuclease activity;0.0282599058075803!GO:0030384;phosphoinositide metabolic process;0.0285836252866824!GO:0008213;protein amino acid alkylation;0.0285836252866824!GO:0006479;protein amino acid methylation;0.0285836252866824!GO:0022890;inorganic cation transmembrane transporter activity;0.028771173331869!GO:0046483;heterocycle metabolic process;0.0288312999193865!GO:0016407;acetyltransferase activity;0.0289957914540999!GO:0000123;histone acetyltransferase complex;0.0289957914540999!GO:0032940;secretion by cell;0.0291840878828403!GO:0003887;DNA-directed DNA polymerase activity;0.0293591278897132!GO:0008143;poly(A) binding;0.0294264268187124!GO:0009309;amine biosynthetic process;0.0299256649507297!GO:0030133;transport vesicle;0.030918639360387!GO:0043066;negative regulation of apoptosis;0.0309956063788865!GO:0005720;nuclear heterochromatin;0.0319530795773084!GO:0019887;protein kinase regulator activity;0.0321129299077324!GO:0030658;transport vesicle membrane;0.0329532175205474!GO:0008601;protein phosphatase type 2A regulator activity;0.0333812699315536!GO:0000097;sulfur amino acid biosynthetic process;0.0335786226672065!GO:0009113;purine base biosynthetic process;0.0337424228563627!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0346926248549906!GO:0045947;negative regulation of translational initiation;0.0350205089784606!GO:0005784;translocon complex;0.035028681885457!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0351195156000735!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0351195156000735!GO:0042791;5S class rRNA transcription;0.0351195156000735!GO:0000127;transcription factor TFIIIC complex;0.0351195156000735!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0351195156000735!GO:0031371;ubiquitin conjugating enzyme complex;0.0355085599977084!GO:0004721;phosphoprotein phosphatase activity;0.0360931292951944!GO:0042802;identical protein binding;0.0362603035452965!GO:0043130;ubiquitin binding;0.0363465687211199!GO:0032182;small conjugating protein binding;0.0363465687211199!GO:0030496;midbody;0.0364031693943039!GO:0009304;tRNA transcription;0.0378257882518753!GO:0009119;ribonucleoside metabolic process;0.0380713339684716!GO:0008629;induction of apoptosis by intracellular signals;0.0381971206107534!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0384176480518149!GO:0006505;GPI anchor metabolic process;0.0386760208035689!GO:0000805;X chromosome;0.0389218745507392!GO:0001740;Barr body;0.0389218745507392!GO:0032981;mitochondrial respiratory chain complex I assembly;0.039861081730989!GO:0010257;NADH dehydrogenase complex assembly;0.039861081730989!GO:0033108;mitochondrial respiratory chain complex assembly;0.039861081730989!GO:0051540;metal cluster binding;0.0403353128755541!GO:0051536;iron-sulfur cluster binding;0.0403353128755541!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0404398014082262!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0405343512976248!GO:0007264;small GTPase mediated signal transduction;0.0406661233265743!GO:0050773;regulation of dendrite development;0.0410166445518179!GO:0016579;protein deubiquitination;0.0410169404754652!GO:0005652;nuclear lamina;0.0413161492114268!GO:0006406;mRNA export from nucleus;0.041467983429046!GO:0031625;ubiquitin protein ligase binding;0.0415490088108057!GO:0003756;protein disulfide isomerase activity;0.0428041919378467!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0428041919378467!GO:0031057;negative regulation of histone modification;0.0428041919378467!GO:0035067;negative regulation of histone acetylation;0.0428041919378467!GO:0042809;vitamin D receptor binding;0.0428442542373979!GO:0004680;casein kinase activity;0.0432397793954131!GO:0004239;methionyl aminopeptidase activity;0.0439786677794209!GO:0009081;branched chain family amino acid metabolic process;0.0443826948382828!GO:0000188;inactivation of MAPK activity;0.044786846691071!GO:0031577;spindle checkpoint;0.0451199979806995!GO:0047485;protein N-terminus binding;0.0456163073764259!GO:0031529;ruffle organization and biogenesis;0.0459591154735043!GO:0031901;early endosome membrane;0.0461505587057046!GO:0030911;TPR domain binding;0.0467393702619993!GO:0008536;Ran GTPase binding;0.0472362954795888!GO:0030119;AP-type membrane coat adaptor complex;0.04759524234503!GO:0019902;phosphatase binding;0.0486619346389089!GO:0022411;cellular component disassembly;0.048896141855788!GO:0006984;ER-nuclear signaling pathway;0.0491502954597424!GO:0005666;DNA-directed RNA polymerase III complex;0.0493138519824142!GO:0005769;early endosome;0.0497219902473198!GO:0030027;lamellipodium;0.0497219902473198!GO:0022884;macromolecule transmembrane transporter activity;0.0497219902473198!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0497219902473198
 |sample_id=10555
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=brain
 |top_motifs=NANOG:3.06072828356;CDC5L:2.68503145651;AHR_ARNT_ARNT2:2.55827971502;TFDP1:2.32595834977;FOXM1:2.26868177485;SOX{8,9,10}:2.16957882681;NFY{A,B,C}:2.08171766878;GFI1:2.08066240095;ZNF143:1.98895330292;AIRE:1.98372237459;BREu{core}:1.95372070878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.87348880384;E2F1..5:1.77334434148;PITX1..3:1.69081497793;NKX6-1,2:1.6701953805;NKX2-3_NKX2-5:1.60518975886;NKX2-1,4:1.59487773657;ONECUT1,2:1.56258881882;OCT4_SOX2{dimer}:1.5613611231;ZIC1..3:1.53264195542;ELK1,4_GABP{A,B1}:1.5020259606;NRF1:1.47795389252;ADNP_IRX_SIX_ZHX:1.46227321295;BPTF:1.41909124962;LHX3,4:1.39390078849;ARID5B:1.38986047767;PATZ1:1.38474815911;MED-1{core}:1.36569693884;PAX4:1.34501428063;TOPORS:1.32774594072;PRRX1,2:1.30815215812;RREB1:1.29641200194;FOXD3:1.27368516805;PAX6:1.26600537535;YY1:1.2442323653;FOXP1:1.22306239629;HOXA9_MEIS1:1.19943426712;ZFP161:1.19449939563;REST:1.18239781868;bHLH_family:1.09457018928;PBX1:1.05969648835;PAX3,7:1.05319881479;CREB1:1.04066302641;PAX5:1.03751290478;ATF4:1.02236333565;EVI1:1.01743595439;PAX1,9:0.994496133188;ZBTB16:0.990569921092;VSX1,2:0.975071922134;POU1F1:0.959753544172;POU6F1:0.956112614157;CDX1,2,4:0.939401807597;STAT1,3:0.926496987701;FOXA2:0.897504484373;ATF5_CREB3:0.868882450439;FOX{I1,J2}:0.850196719783;LEF1_TCF7_TCF7L1,2:0.83275059817;RBPJ:0.832635827654;GATA4:0.820522573776;PAX8:0.775459059676;CUX2:0.76787459331;EGR1..3:0.764035943703;RFX2..5_RFXANK_RFXAP:0.758311575329;POU3F1..4:0.748172618772;NKX3-1:0.7356915696;HOX{A4,D4}:0.719946042156;SOX5:0.718876623471;JUN:0.698815108915;NR1H4:0.695902615914;SOX17:0.689715086662;ZNF384:0.670183707975;HBP1_HMGB_SSRP1_UBTF:0.667294574771;DBP:0.647060952186;CRX:0.646264667182;NHLH1,2:0.575212674015;MZF1:0.538833845772;TEF:0.502600328911;ATF2:0.498679121044;RFX1:0.476437041196;KLF4:0.440086975027;GFI1B:0.437700008056;GTF2I:0.417015209245;HOX{A6,A7,B6,B7}:0.406408156978;TFAP2B:0.34863308693;HOX{A5,B5}:0.34690139729;EN1,2:0.341369016348;SOX2:0.320425473726;HIC1:0.310039353142;MTE{core}:0.292289694178;IKZF2:0.290838617952;POU2F1..3:0.284376123018;MYB:0.243982272422;HMGA1,2:0.171656060603;TGIF1:0.148590258002;MYFfamily:0.148059579822;PDX1:0.136576771613;ALX1:0.135663937005;MAZ:0.112886036946;PRDM1:0.082741098083;FOXL1:0.0777591368637;TAL1_TCF{3,4,12}:0.0330053912642;UFEwm:0.0277143763887;STAT5{A,B}:0.0275107064308;GATA6:0.0234312746051;HNF1A:-0.0289753292588;HSF1,2:-0.0407188618982;XCPE1{core}:-0.041893910065;POU5F1:-0.128021664543;FOXP3:-0.132110956137;FOXQ1:-0.135094302701;NKX2-2,8:-0.147043896581;FOXN1:-0.163480741142;RORA:-0.172074060326;MEF2{A,B,C,D}:-0.222055455235;IKZF1:-0.233604163749;TBP:-0.273672824668;TP53:-0.278363218574;HIF1A:-0.302503099121;FOX{F1,F2,J1}:-0.304818449988;AR:-0.330911051722;HNF4A_NR2F1,2:-0.343571354159;HES1:-0.369306522224;ZNF238:-0.394298105522;NR3C1:-0.402046959401;FOSL2:-0.409832232652;RXR{A,B,G}:-0.43095136764;ZBTB6:-0.444475424418;GTF2A1,2:-0.498199828138;CEBPA,B_DDIT3:-0.501792342507;NR6A1:-0.5329529984;DMAP1_NCOR{1,2}_SMARC:-0.555074233936;SPIB:-0.574457214805;HLF:-0.601225074501;FOX{D1,D2}:-0.606624675394;MYBL2:-0.6158351459;NFIX:-0.624519890683;NFATC1..3:-0.646310791984;NFIL3:-0.652282038309;SNAI1..3:-0.697301723121;NFKB1_REL_RELA:-0.700569198702;SPI1:-0.701778418933;LMO2:-0.706280971822;FOXO1,3,4:-0.721328194812;RUNX1..3:-0.736469591881;MYOD1:-0.739854355792;ELF1,2,4:-0.7423700616;FOS_FOS{B,L1}_JUN{B,D}:-0.768688064924;TLX1..3_NFIC{dimer}:-0.770282122695;BACH2:-0.773386558457;NFE2:-0.77989221999;T:-0.787938590448;GZF1:-0.790556007738;NFE2L2:-0.79446889925;ZEB1:-0.829169347925;SREBF1,2:-0.848211034073;ESRRA:-0.856205482388;ZNF423:-0.856826544622;ATF6:-0.867476883037;HAND1,2:-0.89239392786;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.89245547841;XBP1:-0.894979218658;TFAP2{A,C}:-0.899646798885;PAX2:-0.928601789174;NANOG{mouse}:-1.02573753008;TLX2:-1.03072982963;GCM1,2:-1.04378650111;SRF:-1.04447260074;ETS1,2:-1.05381069489;IRF1,2:-1.05468601706;NFE2L1:-1.08686308819;IRF7:-1.14617286266;SMAD1..7,9:-1.15830160328;MTF1:-1.1691363149;TEAD1:-1.17730768757;PPARG:-1.24006774566;SP1:-1.24036217266;NKX3-2:-1.25497259452;ESR1:-1.29284700927;TFAP4:-1.31775214376;RXRA_VDR{dimer}:-1.31866005832;MAFB:-1.35773970307;ZNF148:-1.41603441061;GLI1..3:-1.44984771447;HMX1:-1.46438250121;NR5A1,2:-1.56789602299;ALX4:-1.576191786;TFCP2:-1.60712597327;TBX4,5:-1.61855430073;EP300:-1.67095328773;EBF1:-1.80300927269;SPZ1:-1.82674851207;STAT2,4,6:-1.98271143863
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10555-107I6;search_select_hide=table117:FF:10555-107I6
 }}

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FF:10555-107I6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:29, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0