FF:10591-108D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004817 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008023;DRR008895;DRZ000320;DRZ001705;DRZ011670;DRZ013055 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10591-108D6 | |id=FF:10591-108D6 | ||
|is_a=CL:0000586;;DOID:3095;;EFO:0002091 | |is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922 | ||
|is_obsolete= | |||
|library_id=CNhs12351 | |||
|library_id_phase_based=2:CNhs12351 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10591 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10591 | |||
|name=testicular germ cell embryonal carcinoma cell line:NEC14 | |name=testicular germ cell embryonal carcinoma cell line:NEC14 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12351,LSID913,release011,COMPLETED | |profile_hcage=CNhs12351,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=139.50075 | |rna_weight_ug=139.50075 | ||
|sample_age=26 | |sample_age=26 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0490 | |sample_cell_catalog=RCB0490 | ||
|sample_cell_line=NEC14 | |sample_cell_line=NEC14 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.55850181161717e-294!GO:0043226;organelle;3.30132516794039e-257!GO:0043229;intracellular organelle;1.24252372726603e-256!GO:0043231;intracellular membrane-bound organelle;8.99880698656073e-254!GO:0043227;membrane-bound organelle;1.22699162004598e-253!GO:0044422;organelle part;5.7206824752137e-154!GO:0044446;intracellular organelle part;8.16792118695969e-153!GO:0005737;cytoplasm;8.49816359301056e-152!GO:0005634;nucleus;2.07535328869103e-148!GO:0044237;cellular metabolic process;1.08205966249788e-115!GO:0043170;macromolecule metabolic process;3.99623650163261e-115!GO:0044238;primary metabolic process;1.34598537384202e-113!GO:0032991;macromolecular complex;3.34231909232971e-103!GO:0030529;ribonucleoprotein complex;1.78651535134344e-101!GO:0044444;cytoplasmic part;1.1787322704872e-100!GO:0003723;RNA binding;9.18407106564198e-97!GO:0044428;nuclear part;8.19551159262667e-96!GO:0010467;gene expression;3.63116623180856e-87!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.14406010956648e-85!GO:0043283;biopolymer metabolic process;5.02789086167641e-83!GO:0043233;organelle lumen;5.86771719221352e-81!GO:0031974;membrane-enclosed lumen;5.86771719221352e-81!GO:0003676;nucleic acid binding;8.62995717246517e-71!GO:0006396;RNA processing;2.61867609223657e-64!GO:0005515;protein binding;6.24870474468728e-63!GO:0005739;mitochondrion;2.81312661269882e-60!GO:0006412;translation;2.77060534276802e-57!GO:0005840;ribosome;7.18829938888984e-56!GO:0031981;nuclear lumen;1.74442418086435e-55!GO:0016043;cellular component organization and biogenesis;3.95027357497941e-55!GO:0016070;RNA metabolic process;8.8588301925425e-53!GO:0016071;mRNA metabolic process;1.81536516284449e-50!GO:0003735;structural constituent of ribosome;2.88594251140861e-48!GO:0043234;protein complex;3.74822531963449e-48!GO:0043228;non-membrane-bound organelle;4.40396324240205e-47!GO:0043232;intracellular non-membrane-bound organelle;4.40396324240205e-47!GO:0008380;RNA splicing;5.24023894356077e-47!GO:0006996;organelle organization and biogenesis;5.24524037924004e-44!GO:0033279;ribosomal subunit;5.74221791821715e-43!GO:0033036;macromolecule localization;1.12014971722077e-42!GO:0006259;DNA metabolic process;2.57565321245485e-42!GO:0006397;mRNA processing;1.9087901506029e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.24882207260567e-41!GO:0015031;protein transport;1.3559519876225e-40!GO:0044429;mitochondrial part;1.60620792497137e-40!GO:0044249;cellular biosynthetic process;3.61714778755118e-40!GO:0009059;macromolecule biosynthetic process;3.61898951121061e-39!GO:0019538;protein metabolic process;3.77717816617083e-39!GO:0031967;organelle envelope;3.85329866297519e-38!GO:0031975;envelope;7.49428026336722e-38!GO:0031090;organelle membrane;3.09470187598987e-37!GO:0008104;protein localization;3.87318405447632e-37!GO:0045184;establishment of protein localization;1.0090284373234e-36!GO:0009058;biosynthetic process;1.16182495728177e-36!GO:0065003;macromolecular complex assembly;3.42248552323119e-35!GO:0044267;cellular protein metabolic process;4.99832323182631e-35!GO:0044260;cellular macromolecule metabolic process;8.43898386787341e-35!GO:0046907;intracellular transport;9.03447176218359e-35!GO:0005681;spliceosome;3.3954702998737e-34!GO:0000166;nucleotide binding;7.63576446517599e-34!GO:0022607;cellular component assembly;2.00163551479974e-33!GO:0005654;nucleoplasm;1.80407251924878e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.46384540487202e-32!GO:0005829;cytosol;5.70742248989793e-30!GO:0007049;cell cycle;1.43563246655566e-29!GO:0006886;intracellular protein transport;2.08921421675066e-28!GO:0005694;chromosome;8.21728429160187e-26!GO:0044451;nucleoplasm part;1.03915636096268e-25!GO:0005730;nucleolus;4.84439115687277e-25!GO:0051649;establishment of cellular localization;1.54012912691846e-24!GO:0005740;mitochondrial envelope;3.53751250929766e-24!GO:0019866;organelle inner membrane;6.29529565150584e-24!GO:0051641;cellular localization;8.87278307726479e-24!GO:0044445;cytosolic part;1.06505418069181e-23!GO:0051276;chromosome organization and biogenesis;1.26982019400266e-23!GO:0022618;protein-RNA complex assembly;1.43202583957555e-23!GO:0006974;response to DNA damage stimulus;1.50915795824903e-23!GO:0015935;small ribosomal subunit;4.39300062021958e-23!GO:0022402;cell cycle process;5.20473963276838e-23!GO:0032553;ribonucleotide binding;2.33373820171049e-22!GO:0032555;purine ribonucleotide binding;2.33373820171049e-22!GO:0044427;chromosomal part;2.51072239605903e-22!GO:0000278;mitotic cell cycle;3.18592417254249e-22!GO:0031966;mitochondrial membrane;3.19658992398799e-22!GO:0017076;purine nucleotide binding;1.0216696610178e-21!GO:0005743;mitochondrial inner membrane;2.41665042547589e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.85535898785613e-21!GO:0016462;pyrophosphatase activity;3.11014284965618e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.34381694062593e-21!GO:0022403;cell cycle phase;4.93740147706067e-21!GO:0015934;large ribosomal subunit;5.42730742544531e-21!GO:0006119;oxidative phosphorylation;6.16276047640727e-21!GO:0017111;nucleoside-triphosphatase activity;1.85899325317927e-20!GO:0000087;M phase of mitotic cell cycle;1.85899325317927e-20!GO:0008135;translation factor activity, nucleic acid binding;2.80032657338935e-20!GO:0005524;ATP binding;3.25520713712854e-20!GO:0032559;adenyl ribonucleotide binding;6.24759881971212e-20!GO:0007067;mitosis;6.25344155243247e-20!GO:0000279;M phase;1.7804026041949e-19!GO:0031980;mitochondrial lumen;1.80340395363998e-19!GO:0005759;mitochondrial matrix;1.80340395363998e-19!GO:0019222;regulation of metabolic process;2.53334198149146e-19!GO:0044265;cellular macromolecule catabolic process;3.71838661892195e-19!GO:0030554;adenyl nucleotide binding;4.27356441299971e-19!GO:0006281;DNA repair;5.98009263739745e-19!GO:0044455;mitochondrial membrane part;1.09813531416949e-18!GO:0042254;ribosome biogenesis and assembly;3.40516226716614e-18!GO:0016874;ligase activity;3.58206204332573e-18!GO:0051301;cell division;5.45207971858515e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;5.7273068927554e-18!GO:0004386;helicase activity;8.26675917960969e-18!GO:0006512;ubiquitin cycle;1.50493224693073e-17!GO:0006457;protein folding;1.5120392290187e-17!GO:0006323;DNA packaging;3.170359911474e-17!GO:0050794;regulation of cellular process;5.21913136252449e-17!GO:0043285;biopolymer catabolic process;1.01414909151237e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03654976568719e-16!GO:0000375;RNA splicing, via transesterification reactions;1.03654976568719e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03654976568719e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03654976568719e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17144950792182e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.19956489105492e-16!GO:0031323;regulation of cellular metabolic process;1.64411383537825e-16!GO:0019941;modification-dependent protein catabolic process;1.72120716793114e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.72120716793114e-16!GO:0006260;DNA replication;1.7684291113834e-16!GO:0044257;cellular protein catabolic process;2.62846655330815e-16!GO:0006350;transcription;2.922493061624e-16!GO:0044453;nuclear membrane part;3.55783292114849e-16!GO:0006403;RNA localization;6.18929407924912e-16!GO:0009057;macromolecule catabolic process;6.25488530642899e-16!GO:0031965;nuclear membrane;7.68450404114658e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.34459328621839e-15!GO:0051082;unfolded protein binding;1.78835036808759e-15!GO:0016887;ATPase activity;1.78835036808759e-15!GO:0050657;nucleic acid transport;2.09897385857975e-15!GO:0051236;establishment of RNA localization;2.09897385857975e-15!GO:0050658;RNA transport;2.09897385857975e-15!GO:0005761;mitochondrial ribosome;2.23578353022762e-15!GO:0000313;organellar ribosome;2.23578353022762e-15!GO:0008134;transcription factor binding;2.5620090406334e-15!GO:0009719;response to endogenous stimulus;2.6222374861176e-15!GO:0005643;nuclear pore;3.06343387747512e-15!GO:0003743;translation initiation factor activity;3.57753085732964e-15!GO:0006413;translational initiation;5.22656158549735e-15!GO:0010468;regulation of gene expression;6.4438745715862e-15!GO:0005635;nuclear envelope;6.88790689336319e-15!GO:0048770;pigment granule;1.08720201985866e-14!GO:0042470;melanosome;1.08720201985866e-14!GO:0006605;protein targeting;1.24241947183811e-14!GO:0008026;ATP-dependent helicase activity;1.28432470645956e-14!GO:0042623;ATPase activity, coupled;1.70824586673991e-14!GO:0032774;RNA biosynthetic process;3.31598373356131e-14!GO:0005746;mitochondrial respiratory chain;3.55556054412278e-14!GO:0016604;nuclear body;3.85941076963605e-14!GO:0006351;transcription, DNA-dependent;5.05663662550073e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.34950352048279e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.16085185252587e-13!GO:0006913;nucleocytoplasmic transport;1.66988965124788e-13!GO:0051028;mRNA transport;1.66988965124788e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.76685313418684e-13!GO:0012505;endomembrane system;1.93509039262767e-13!GO:0044248;cellular catabolic process;2.06074443056389e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.66114538134343e-13!GO:0003954;NADH dehydrogenase activity;2.66114538134343e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.66114538134343e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.82793061664755e-13!GO:0030163;protein catabolic process;3.24925799177991e-13!GO:0051169;nuclear transport;5.04919251280474e-13!GO:0006446;regulation of translational initiation;5.59055302005651e-13!GO:0006399;tRNA metabolic process;7.15151596344078e-13!GO:0006364;rRNA processing;1.19138564386716e-12!GO:0065002;intracellular protein transport across a membrane;1.23888818938986e-12!GO:0016607;nuclear speck;1.23904852553631e-12!GO:0003677;DNA binding;2.08355828765102e-12!GO:0016072;rRNA metabolic process;2.35292757333587e-12!GO:0046930;pore complex;3.40324498443222e-12!GO:0050789;regulation of biological process;7.32270937961038e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.1751132813004e-11!GO:0042773;ATP synthesis coupled electron transport;1.1751132813004e-11!GO:0051186;cofactor metabolic process;1.24420161943319e-11!GO:0045449;regulation of transcription;1.30208349627402e-11!GO:0043412;biopolymer modification;1.44873130442778e-11!GO:0015630;microtubule cytoskeleton;1.83776546616272e-11!GO:0000785;chromatin;2.46486021494218e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.60564062836906e-11!GO:0045271;respiratory chain complex I;2.60564062836906e-11!GO:0005747;mitochondrial respiratory chain complex I;2.60564062836906e-11!GO:0016568;chromatin modification;2.74539003891164e-11!GO:0006355;regulation of transcription, DNA-dependent;3.56177027860556e-11!GO:0006366;transcription from RNA polymerase II promoter;3.90615578121774e-11!GO:0065004;protein-DNA complex assembly;5.0576420734721e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.30987210425376e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.30987210425376e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.30987210425376e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.20112195991774e-11!GO:0008565;protein transporter activity;8.92482909018118e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13577988850269e-10!GO:0043038;amino acid activation;1.6435814382605e-10!GO:0006418;tRNA aminoacylation for protein translation;1.6435814382605e-10!GO:0043039;tRNA aminoacylation;1.6435814382605e-10!GO:0048193;Golgi vesicle transport;2.00990964045401e-10!GO:0006732;coenzyme metabolic process;2.97077014595733e-10!GO:0005794;Golgi apparatus;6.81631902211646e-10!GO:0003712;transcription cofactor activity;8.50446427818794e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.80012916198986e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.90795508870789e-09!GO:0017038;protein import;2.32605983227132e-09!GO:0006464;protein modification process;3.92818203226089e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.04763694287426e-09!GO:0043687;post-translational protein modification;4.06428419898793e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.74231042795131e-09!GO:0006333;chromatin assembly or disassembly;5.61644902636893e-09!GO:0006163;purine nucleotide metabolic process;6.40496726301073e-09!GO:0009259;ribonucleotide metabolic process;6.788177570753e-09!GO:0006164;purine nucleotide biosynthetic process;8.14285584173779e-09!GO:0000775;chromosome, pericentric region;1.27847890193972e-08!GO:0015986;ATP synthesis coupled proton transport;1.31710724190149e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31710724190149e-08!GO:0016779;nucleotidyltransferase activity;1.54297476175789e-08!GO:0009260;ribonucleotide biosynthetic process;2.34470383147695e-08!GO:0000074;regulation of progression through cell cycle;2.5700063257807e-08!GO:0051726;regulation of cell cycle;2.66682115337618e-08!GO:0043566;structure-specific DNA binding;2.68748187251172e-08!GO:0009150;purine ribonucleotide metabolic process;2.76976603582974e-08!GO:0000245;spliceosome assembly;3.15764743062961e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.46285183541825e-08!GO:0006261;DNA-dependent DNA replication;3.8422983524942e-08!GO:0006461;protein complex assembly;3.94302010026189e-08!GO:0005813;centrosome;5.02513577841553e-08!GO:0003697;single-stranded DNA binding;5.95299819992699e-08!GO:0003724;RNA helicase activity;1.00944043414655e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.01503743469832e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.05307583010067e-07!GO:0016192;vesicle-mediated transport;1.23499655003574e-07!GO:0051188;cofactor biosynthetic process;1.71288294275599e-07!GO:0003899;DNA-directed RNA polymerase activity;1.73555381334264e-07!GO:0019829;cation-transporting ATPase activity;1.76456736801193e-07!GO:0005815;microtubule organizing center;1.88194695242773e-07!GO:0008639;small protein conjugating enzyme activity;2.34197754675529e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.51781013577738e-07!GO:0006754;ATP biosynthetic process;2.91444337324971e-07!GO:0006753;nucleoside phosphate metabolic process;2.91444337324971e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.12544273536969e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.12544273536969e-07!GO:0005819;spindle;3.43902592218691e-07!GO:0004842;ubiquitin-protein ligase activity;4.69642812682217e-07!GO:0005793;ER-Golgi intermediate compartment;5.64106615170332e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.3511867304969e-07!GO:0009108;coenzyme biosynthetic process;6.866329210899e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.55065134562752e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.73662201046195e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.73662201046195e-07!GO:0012501;programmed cell death;7.87242343476456e-07!GO:0016740;transferase activity;7.95213872670081e-07!GO:0051170;nuclear import;8.91138931345892e-07!GO:0019787;small conjugating protein ligase activity;9.16598275742642e-07!GO:0051168;nuclear export;1.01327150431193e-06!GO:0009060;aerobic respiration;1.07929716167201e-06!GO:0006915;apoptosis;1.1055501442308e-06!GO:0043623;cellular protein complex assembly;1.20103074085689e-06!GO:0046034;ATP metabolic process;1.21602334543998e-06!GO:0009055;electron carrier activity;1.23897298257699e-06!GO:0005783;endoplasmic reticulum;1.25646192306533e-06!GO:0005667;transcription factor complex;1.34919411547514e-06!GO:0031497;chromatin assembly;1.43235611058029e-06!GO:0009141;nucleoside triphosphate metabolic process;1.51327155665383e-06!GO:0009056;catabolic process;1.54237360119148e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.71521280438181e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.71521280438181e-06!GO:0051246;regulation of protein metabolic process;1.86651291997444e-06!GO:0006334;nucleosome assembly;1.86651291997444e-06!GO:0045259;proton-transporting ATP synthase complex;1.98771996100273e-06!GO:0032446;protein modification by small protein conjugation;2.05726706558378e-06!GO:0008094;DNA-dependent ATPase activity;2.16862677783593e-06!GO:0006752;group transfer coenzyme metabolic process;2.25552465765167e-06!GO:0006606;protein import into nucleus;2.2985798276681e-06!GO:0007059;chromosome segregation;2.35145941041707e-06!GO:0008186;RNA-dependent ATPase activity;2.45252397029758e-06!GO:0045333;cellular respiration;2.56040791159485e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.59490488986591e-06!GO:0008270;zinc ion binding;2.91235470009324e-06!GO:0007051;spindle organization and biogenesis;3.05921121940314e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.49188440968886e-06!GO:0016363;nuclear matrix;5.19400290095457e-06!GO:0065007;biological regulation;5.50525516941519e-06!GO:0044452;nucleolar part;6.17881686048277e-06!GO:0016567;protein ubiquitination;6.8056300412754e-06!GO:0044432;endoplasmic reticulum part;7.23277977149712e-06!GO:0004004;ATP-dependent RNA helicase activity;8.53183888064095e-06!GO:0005657;replication fork;9.61453465260101e-06!GO:0007005;mitochondrion organization and biogenesis;9.83562446930334e-06!GO:0048475;coated membrane;1.00798422154321e-05!GO:0030117;membrane coat;1.00798422154321e-05!GO:0006402;mRNA catabolic process;1.01219070440083e-05!GO:0006099;tricarboxylic acid cycle;1.23188632383072e-05!GO:0046356;acetyl-CoA catabolic process;1.23188632383072e-05!GO:0000314;organellar small ribosomal subunit;1.42112561588593e-05!GO:0005763;mitochondrial small ribosomal subunit;1.42112561588593e-05!GO:0000075;cell cycle checkpoint;1.64965348268215e-05!GO:0006084;acetyl-CoA metabolic process;1.82270434623123e-05!GO:0005874;microtubule;1.82270434623123e-05!GO:0016881;acid-amino acid ligase activity;1.85542137754156e-05!GO:0003690;double-stranded DNA binding;2.01829999068363e-05!GO:0008219;cell death;2.01829999068363e-05!GO:0016265;death;2.01829999068363e-05!GO:0007010;cytoskeleton organization and biogenesis;2.30621808304401e-05!GO:0005768;endosome;2.42465247158727e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.4487067927696e-05!GO:0006401;RNA catabolic process;2.75793222912234e-05!GO:0009117;nucleotide metabolic process;3.05540501960355e-05!GO:0043021;ribonucleoprotein binding;3.23906371549229e-05!GO:0000776;kinetochore;3.36461492116047e-05!GO:0007017;microtubule-based process;3.49079247706954e-05!GO:0005762;mitochondrial large ribosomal subunit;3.85556495792725e-05!GO:0000315;organellar large ribosomal subunit;3.85556495792725e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.97862920065978e-05!GO:0006383;transcription from RNA polymerase III promoter;4.14949189524528e-05!GO:0009109;coenzyme catabolic process;4.34897488121694e-05!GO:0031988;membrane-bound vesicle;4.47019995152297e-05!GO:0003729;mRNA binding;4.57890807399645e-05!GO:0051427;hormone receptor binding;4.65870510058992e-05!GO:0008168;methyltransferase activity;4.79903259723184e-05!GO:0030880;RNA polymerase complex;4.90321232378777e-05!GO:0000151;ubiquitin ligase complex;5.44322977815514e-05!GO:0006302;double-strand break repair;5.86845537503268e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.95071560391811e-05!GO:0051325;interphase;6.03889068279467e-05!GO:0000059;protein import into nucleus, docking;6.26770524127105e-05!GO:0051187;cofactor catabolic process;7.15690110236404e-05!GO:0003678;DNA helicase activity;7.67268344294663e-05!GO:0006613;cotranslational protein targeting to membrane;7.67268344294663e-05!GO:0003713;transcription coactivator activity;7.79888284092628e-05!GO:0006793;phosphorus metabolic process;8.09380868363081e-05!GO:0006796;phosphate metabolic process;8.09380868363081e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.23014609589092e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.36705129460602e-05!GO:0030120;vesicle coat;8.69339204855332e-05!GO:0030662;coated vesicle membrane;8.69339204855332e-05!GO:0000228;nuclear chromosome;9.9701469407607e-05!GO:0035257;nuclear hormone receptor binding;0.000100809486488353!GO:0006352;transcription initiation;0.000102350730894736!GO:0031982;vesicle;0.000102350730894736!GO:0044440;endosomal part;0.000102586844400482!GO:0010008;endosome membrane;0.000102586844400482!GO:0003682;chromatin binding;0.000103639163201561!GO:0051052;regulation of DNA metabolic process;0.00011029891410356!GO:0051329;interphase of mitotic cell cycle;0.00011041815990443!GO:0015631;tubulin binding;0.000113481903442235!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000114132025184957!GO:0000428;DNA-directed RNA polymerase complex;0.000114132025184957!GO:0016251;general RNA polymerase II transcription factor activity;0.000114891817304539!GO:0031072;heat shock protein binding;0.000115586797597635!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000122899639191226!GO:0005525;GTP binding;0.000131271652179755!GO:0044431;Golgi apparatus part;0.00013665673548544!GO:0031410;cytoplasmic vesicle;0.000142196569716381!GO:0016564;transcription repressor activity;0.000159774831602326!GO:0007093;mitotic cell cycle checkpoint;0.000173343456965671!GO:0051789;response to protein stimulus;0.000194485428976787!GO:0006986;response to unfolded protein;0.000194485428976787!GO:0005770;late endosome;0.000200715541860507!GO:0016563;transcription activator activity;0.000202666496794101!GO:0019899;enzyme binding;0.000203135641966415!GO:0000049;tRNA binding;0.000209930679950311!GO:0032259;methylation;0.000251462250977724!GO:0006520;amino acid metabolic process;0.000267357425771448!GO:0043069;negative regulation of programmed cell death;0.000272233353987453!GO:0051087;chaperone binding;0.000273880560539119!GO:0043066;negative regulation of apoptosis;0.000302722628659266!GO:0003714;transcription corepressor activity;0.00031999714294201!GO:0007006;mitochondrial membrane organization and biogenesis;0.000327384634981669!GO:0007088;regulation of mitosis;0.000330727182368756!GO:0008033;tRNA processing;0.000342894442756128!GO:0005669;transcription factor TFIID complex;0.000355780513713809!GO:0043414;biopolymer methylation;0.000359456866205227!GO:0005684;U2-dependent spliceosome;0.000375769058567111!GO:0043681;protein import into mitochondrion;0.00039038452693718!GO:0006818;hydrogen transport;0.000399785010549758!GO:0000139;Golgi membrane;0.000406349555922121!GO:0006405;RNA export from nucleus;0.000423922500746456!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000428316454273575!GO:0006414;translational elongation;0.000432295998110805!GO:0042981;regulation of apoptosis;0.000451061358122811!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000456233983532743!GO:0044454;nuclear chromosome part;0.000463840869749591!GO:0031324;negative regulation of cellular metabolic process;0.000467855929795175!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000475939732321247!GO:0003924;GTPase activity;0.000513299504840325!GO:0000793;condensed chromosome;0.000522538736758695!GO:0040029;regulation of gene expression, epigenetic;0.000522538736758695!GO:0043067;regulation of programmed cell death;0.000522538736758695!GO:0005789;endoplasmic reticulum membrane;0.000526508499334366!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000532489361741579!GO:0005769;early endosome;0.000538340055980294!GO:0006611;protein export from nucleus;0.000559748299735689!GO:0015992;proton transport;0.000577217024242678!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000583315606240194!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000651206660393613!GO:0005637;nuclear inner membrane;0.000652691610398163!GO:0019843;rRNA binding;0.000654887907014125!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000659598846869977!GO:0006338;chromatin remodeling;0.000669321617591294!GO:0005839;proteasome core complex (sensu Eukaryota);0.000682652498944744!GO:0032508;DNA duplex unwinding;0.000692421036191183!GO:0032392;DNA geometric change;0.000692421036191183!GO:0030867;rough endoplasmic reticulum membrane;0.000719602699261284!GO:0006916;anti-apoptosis;0.000741612025703122!GO:0046914;transition metal ion binding;0.000758640827924143!GO:0006310;DNA recombination;0.000810130456809274!GO:0008654;phospholipid biosynthetic process;0.000922215841446599!GO:0016310;phosphorylation;0.000951463326664785!GO:0007052;mitotic spindle organization and biogenesis;0.000951463326664785!GO:0007264;small GTPase mediated signal transduction;0.000970805212429275!GO:0016853;isomerase activity;0.000971050797406309!GO:0048487;beta-tubulin binding;0.00103949022062222!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00110437934494409!GO:0032561;guanyl ribonucleotide binding;0.00114336058659571!GO:0019001;guanyl nucleotide binding;0.00114336058659571!GO:0051920;peroxiredoxin activity;0.00123224820481982!GO:0006612;protein targeting to membrane;0.00123861526505284!GO:0009165;nucleotide biosynthetic process;0.00126457977563108!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00131557756480017!GO:0019783;small conjugating protein-specific protease activity;0.0013925414744366!GO:0008250;oligosaccharyl transferase complex;0.00140967578150329!GO:0015980;energy derivation by oxidation of organic compounds;0.00164786095084158!GO:0051252;regulation of RNA metabolic process;0.00166221656281442!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00166737607801524!GO:0009892;negative regulation of metabolic process;0.00166865667998513!GO:0004298;threonine endopeptidase activity;0.00167768024697389!GO:0006541;glutamine metabolic process;0.00169849204928625!GO:0000922;spindle pole;0.00171280563410854!GO:0048471;perinuclear region of cytoplasm;0.00172320878234615!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00181756346876442!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00183160871285637!GO:0000725;recombinational repair;0.00187419246743772!GO:0000724;double-strand break repair via homologous recombination;0.00187419246743772!GO:0006268;DNA unwinding during replication;0.00200034465574571!GO:0004527;exonuclease activity;0.0021421552636855!GO:0045454;cell redox homeostasis;0.00222124712337772!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00233060723191766!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00233060723191766!GO:0031252;leading edge;0.00234053154835018!GO:0042393;histone binding;0.00252998904414019!GO:0005798;Golgi-associated vesicle;0.00261674053680609!GO:0000786;nucleosome;0.00263618381516674!GO:0004843;ubiquitin-specific protease activity;0.00270768679735937!GO:0016272;prefoldin complex;0.00275111868239526!GO:0003746;translation elongation factor activity;0.00279690860779319!GO:0006730;one-carbon compound metabolic process;0.0029109232097782!GO:0003684;damaged DNA binding;0.00297450066271313!GO:0003711;transcription elongation regulator activity;0.00312028654117463!GO:0004221;ubiquitin thiolesterase activity;0.00313048480274423!GO:0005741;mitochondrial outer membrane;0.00316383433905607!GO:0006275;regulation of DNA replication;0.00317847468727662!GO:0000792;heterochromatin;0.00347261983808185!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00351910309899457!GO:0048500;signal recognition particle;0.0035197774790642!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00354503884642956!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00354503884642956!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00354503884642956!GO:0032200;telomere organization and biogenesis;0.00364262254652431!GO:0000723;telomere maintenance;0.00364262254652431!GO:0016787;hydrolase activity;0.00375385431622086!GO:0006626;protein targeting to mitochondrion;0.00378692129902114!GO:0009112;nucleobase metabolic process;0.00384288977852103!GO:0005876;spindle microtubule;0.00391955673153576!GO:0005788;endoplasmic reticulum lumen;0.00399399362206774!GO:0006144;purine base metabolic process;0.00410531546160122!GO:0016790;thiolester hydrolase activity;0.00411964594306556!GO:0006417;regulation of translation;0.0041202583519796!GO:0016481;negative regulation of transcription;0.00432604007527371!GO:0003702;RNA polymerase II transcription factor activity;0.00443356261530364!GO:0035258;steroid hormone receptor binding;0.00447714294338427!GO:0009451;RNA modification;0.00454573692062251!GO:0008652;amino acid biosynthetic process;0.0045852640911298!GO:0044450;microtubule organizing center part;0.00471009298037499!GO:0006284;base-excision repair;0.00484906880453641!GO:0005048;signal sequence binding;0.00499559603650488!GO:0048523;negative regulation of cellular process;0.0051813709220216!GO:0005885;Arp2/3 protein complex;0.00525271479477129!GO:0043022;ribosome binding;0.00540786751576288!GO:0008017;microtubule binding;0.00558021908404932!GO:0005791;rough endoplasmic reticulum;0.00560101812455313!GO:0042802;identical protein binding;0.00560779677981595!GO:0004674;protein serine/threonine kinase activity;0.00578624382659337!GO:0031968;organelle outer membrane;0.00638308458444131!GO:0016584;nucleosome positioning;0.00658355694669839!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00676681187063135!GO:0042026;protein refolding;0.00682788007051389!GO:0016859;cis-trans isomerase activity;0.00694637197429764!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00697753273790395!GO:0004576;oligosaccharyl transferase activity;0.0072341415369296!GO:0008632;apoptotic program;0.00725351127711216!GO:0006839;mitochondrial transport;0.00725351127711216!GO:0019867;outer membrane;0.00743903123320401!GO:0030118;clathrin coat;0.00766695305900224!GO:0046474;glycerophospholipid biosynthetic process;0.00768164512900623!GO:0006306;DNA methylation;0.00778433257812023!GO:0006305;DNA alkylation;0.00778433257812023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00782755473180004!GO:0030134;ER to Golgi transport vesicle;0.00798745934512261!GO:0006891;intra-Golgi vesicle-mediated transport;0.00808982872454607!GO:0007021;tubulin folding;0.00810213554609208!GO:0007004;telomere maintenance via telomerase;0.00824675577006446!GO:0008139;nuclear localization sequence binding;0.0083112661429028!GO:0033116;ER-Golgi intermediate compartment membrane;0.00852363832379064!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0086053027022222!GO:0015002;heme-copper terminal oxidase activity;0.0086053027022222!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0086053027022222!GO:0004129;cytochrome-c oxidase activity;0.0086053027022222!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0086053027022222!GO:0004003;ATP-dependent DNA helicase activity;0.00866258770731639!GO:0030521;androgen receptor signaling pathway;0.00866258770731639!GO:0000152;nuclear ubiquitin ligase complex;0.00884036944086463!GO:0008092;cytoskeletal protein binding;0.00884642607653149!GO:0008312;7S RNA binding;0.00890567224450487!GO:0008276;protein methyltransferase activity;0.00890567224450487!GO:0006376;mRNA splice site selection;0.00900396223655913!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00900396223655913!GO:0005832;chaperonin-containing T-complex;0.00903332472102907!GO:0000096;sulfur amino acid metabolic process;0.0095351395428818!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00989580010224551!GO:0045047;protein targeting to ER;0.00989580010224551!GO:0000123;histone acetyltransferase complex;0.0105573768565398!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0106270466310362!GO:0045947;negative regulation of translational initiation;0.0106658951484477!GO:0005732;small nucleolar ribonucleoprotein complex;0.0109081887272939!GO:0006007;glucose catabolic process;0.0109081887272939!GO:0043624;cellular protein complex disassembly;0.0117014233218373!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0123845606804375!GO:0045892;negative regulation of transcription, DNA-dependent;0.0124885866255746!GO:0043596;nuclear replication fork;0.0125156499899091!GO:0009116;nucleoside metabolic process;0.0131207063623821!GO:0018196;peptidyl-asparagine modification;0.0131866553459231!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0131866553459231!GO:0032984;macromolecular complex disassembly;0.0132641299688034!GO:0001824;blastocyst development;0.0133384056073158!GO:0006519;amino acid and derivative metabolic process;0.0136115963793583!GO:0031577;spindle checkpoint;0.0138133826435962!GO:0045045;secretory pathway;0.0138222351449553!GO:0031570;DNA integrity checkpoint;0.0138616743377966!GO:0035267;NuA4 histone acetyltransferase complex;0.0143216215392565!GO:0000209;protein polyubiquitination;0.014506593324!GO:0006400;tRNA modification;0.0146909896104829!GO:0045786;negative regulation of progression through cell cycle;0.0149381135433479!GO:0022411;cellular component disassembly;0.0150849616928134!GO:0005758;mitochondrial intermembrane space;0.0160443390239174!GO:0005773;vacuole;0.0162211136994854!GO:0005938;cell cortex;0.0163576973728128!GO:0006289;nucleotide-excision repair;0.0164742909735673!GO:0030663;COPI coated vesicle membrane;0.0166067437796497!GO:0030126;COPI vesicle coat;0.0166067437796497!GO:0043488;regulation of mRNA stability;0.0166964100280766!GO:0043487;regulation of RNA stability;0.0166964100280766!GO:0051539;4 iron, 4 sulfur cluster binding;0.0167723645477449!GO:0000790;nuclear chromatin;0.017118374123446!GO:0006304;DNA modification;0.0174508956796513!GO:0030027;lamellipodium;0.0174508956796513!GO:0008180;signalosome;0.017548426187286!GO:0000781;chromosome, telomeric region;0.0177073428490874!GO:0048037;cofactor binding;0.0182132772969526!GO:0030127;COPII vesicle coat;0.0182432075280618!GO:0012507;ER to Golgi transport vesicle membrane;0.0182432075280618!GO:0050662;coenzyme binding;0.0182495124111188!GO:0000910;cytokinesis;0.0183260749840632!GO:0051053;negative regulation of DNA metabolic process;0.0185019047748774!GO:0000178;exosome (RNase complex);0.0185340800816195!GO:0001701;in utero embryonic development;0.0187223306756617!GO:0019752;carboxylic acid metabolic process;0.0194298219496664!GO:0004532;exoribonuclease activity;0.0195454547097111!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0195454547097111!GO:0009303;rRNA transcription;0.0195622003479824!GO:0006406;mRNA export from nucleus;0.0196974455724978!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0196974455724978!GO:0015399;primary active transmembrane transporter activity;0.0196974455724978!GO:0030658;transport vesicle membrane;0.0197571557072111!GO:0046822;regulation of nucleocytoplasmic transport;0.0207450956190373!GO:0048519;negative regulation of biological process;0.0207982999443365!GO:0043189;H4/H2A histone acetyltransferase complex;0.0208377789321793!GO:0006278;RNA-dependent DNA replication;0.0210514245283699!GO:0005774;vacuolar membrane;0.0213375126109365!GO:0043241;protein complex disassembly;0.0213757378955954!GO:0031901;early endosome membrane;0.0214126449242947!GO:0008629;induction of apoptosis by intracellular signals;0.0217192408561557!GO:0031625;ubiquitin protein ligase binding;0.0218210911869666!GO:0006509;membrane protein ectodomain proteolysis;0.0220986038785883!GO:0033619;membrane protein proteolysis;0.0220986038785883!GO:0030036;actin cytoskeleton organization and biogenesis;0.0222397823539129!GO:0030032;lamellipodium biogenesis;0.0223976511166004!GO:0030131;clathrin adaptor complex;0.0225291527805938!GO:0008234;cysteine-type peptidase activity;0.0226875121810607!GO:0022890;inorganic cation transmembrane transporter activity;0.0228063746025727!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.023322577701232!GO:0000339;RNA cap binding;0.0239928023049295!GO:0006082;organic acid metabolic process;0.0240874703079021!GO:0008022;protein C-terminus binding;0.0241512083586381!GO:0000097;sulfur amino acid biosynthetic process;0.0245718699653452!GO:0031124;mRNA 3'-end processing;0.0247094281142215!GO:0006270;DNA replication initiation;0.0248580789915053!GO:0031970;organelle envelope lumen;0.024879285461942!GO:0030031;cell projection biogenesis;0.0255445274012197!GO:0006367;transcription initiation from RNA polymerase II promoter;0.026454784673213!GO:0016197;endosome transport;0.0268892186794901!GO:0005666;DNA-directed RNA polymerase III complex;0.0269197815558764!GO:0005663;DNA replication factor C complex;0.0270517287155685!GO:0030119;AP-type membrane coat adaptor complex;0.0270517287155685!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0271049130308482!GO:0042770;DNA damage response, signal transduction;0.0273713939636727!GO:0031326;regulation of cellular biosynthetic process;0.0280960432359387!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0286716500392211!GO:0008097;5S rRNA binding;0.0289351579051226!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0290036542077037!GO:0006595;polyamine metabolic process;0.0292155312451198!GO:0006607;NLS-bearing substrate import into nucleus;0.0292155312451198!GO:0050811;GABA receptor binding;0.0293783048131549!GO:0046483;heterocycle metabolic process;0.0294069555039944!GO:0046467;membrane lipid biosynthetic process;0.0296753590423502!GO:0006301;postreplication repair;0.0297604385079297!GO:0006516;glycoprotein catabolic process;0.0298017343665895!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0298825365448193!GO:0065009;regulation of a molecular function;0.0299630456806177!GO:0000118;histone deacetylase complex;0.031886651813471!GO:0008143;poly(A) binding;0.0323537118284465!GO:0006984;ER-nuclear signaling pathway;0.0330052626248918!GO:0046426;negative regulation of JAK-STAT cascade;0.0330052626248918!GO:0044262;cellular carbohydrate metabolic process;0.0336841053258645!GO:0030518;steroid hormone receptor signaling pathway;0.0340660816853132!GO:0005784;translocon complex;0.0341745675563958!GO:0030137;COPI-coated vesicle;0.0342206320573221!GO:0031902;late endosome membrane;0.0348267016823384!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0349018836919687!GO:0006564;L-serine biosynthetic process;0.0355889034501428!GO:0000819;sister chromatid segregation;0.0356516482997501!GO:0050178;phenylpyruvate tautomerase activity;0.035756679702049!GO:0043130;ubiquitin binding;0.0366099140950295!GO:0032182;small conjugating protein binding;0.0366099140950295!GO:0030660;Golgi-associated vesicle membrane;0.0369986827493925!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0369986827493925!GO:0008320;protein transmembrane transporter activity;0.0378822993480722!GO:0009113;purine base biosynthetic process;0.0378830282427612!GO:0006378;mRNA polyadenylation;0.0381496132099551!GO:0051348;negative regulation of transferase activity;0.0381496132099551!GO:0022884;macromolecule transmembrane transporter activity;0.0383945712562858!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0383945712562858!GO:0042769;DNA damage response, detection of DNA damage;0.0386494224567666!GO:0006733;oxidoreduction coenzyme metabolic process;0.0386494224567666!GO:0051101;regulation of DNA binding;0.0387171474227276!GO:0005996;monosaccharide metabolic process;0.0397092692152096!GO:0033673;negative regulation of kinase activity;0.0399910735812206!GO:0006469;negative regulation of protein kinase activity;0.0399910735812206!GO:0008536;Ran GTPase binding;0.0402593144562004!GO:0016407;acetyltransferase activity;0.0404536916231082!GO:0009070;serine family amino acid biosynthetic process;0.040534131614736!GO:0032981;mitochondrial respiratory chain complex I assembly;0.04097346419614!GO:0010257;NADH dehydrogenase complex assembly;0.04097346419614!GO:0033108;mitochondrial respiratory chain complex assembly;0.04097346419614!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.04097346419614!GO:0005844;polysome;0.04097346419614!GO:0019318;hexose metabolic process;0.0418218311080111!GO:0005905;coated pit;0.0422673421528864!GO:0031123;RNA 3'-end processing;0.0422907993940983!GO:0001832;blastocyst growth;0.0422907993940983!GO:0000726;non-recombinational repair;0.042748429806781!GO:0043601;nuclear replisome;0.0434182672923831!GO:0030894;replisome;0.0434182672923831!GO:0004518;nuclease activity;0.0436149975955203!GO:0030515;snoRNA binding;0.0437436673542831!GO:0046489;phosphoinositide biosynthetic process;0.0437853600283138!GO:0042982;amyloid precursor protein metabolic process;0.044120348868714!GO:0000070;mitotic sister chromatid segregation;0.0442187988468898!GO:0006360;transcription from RNA polymerase I promoter;0.0449190675638969!GO:0000077;DNA damage checkpoint;0.0462125108856781!GO:0017134;fibroblast growth factor binding;0.0463859545682685!GO:0008156;negative regulation of DNA replication;0.0467814775505222!GO:0001725;stress fiber;0.0470876342223317!GO:0032432;actin filament bundle;0.0470876342223317!GO:0044437;vacuolar part;0.0472921539495567!GO:0006740;NADPH regeneration;0.0473022101617878!GO:0006098;pentose-phosphate shunt;0.0473022101617878!GO:0001522;pseudouridine synthesis;0.047412949839911!GO:0005862;muscle thin filament tropomyosin;0.0476335600511831!GO:0046365;monosaccharide catabolic process;0.0479044742157305!GO:0033130;acetylcholine receptor binding;0.047943979982471!GO:0009066;aspartate family amino acid metabolic process;0.0480209882942675!GO:0003747;translation release factor activity;0.0495729651530738!GO:0008079;translation termination factor activity;0.0495729651530738!GO:0006096;glycolysis;0.0496045821497943 | |||
|sample_id=10591 | |sample_id=10591 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=OCT4_SOX2{dimer}:3.66649950416;VSX1,2:2.23629553094;PITX1..3:1.67601785373;STAT1,3:1.67439165974;FOXD3:1.54356774023;NFY{A,B,C}:1.42931959862;SNAI1..3:1.34378455217;CUX2:1.32814028367;STAT5{A,B}:1.32682635466;E2F1..5:1.2714013276;ALX1:1.24666654035;XCPE1{core}:1.23612004681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20730556514;SOX{8,9,10}:1.19593693489;bHLH_family:1.1877826742;NKX2-3_NKX2-5:1.18539230894;FOXQ1:1.17984029293;ZEB1:1.13394789892;ONECUT1,2:1.1257368559;PBX1:1.08154658527;LEF1_TCF7_TCF7L1,2:1.04831697254;RORA:1.04300148118;ZNF384:1.02398027048;SOX2:1.01318060253;TOPORS:0.980062177506;MYB:0.95372418912;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.953686649575;GFI1:0.928263086637;POU5F1:0.925715401481;POU2F1..3:0.908533470949;CRX:0.90011071007;PATZ1:0.859750206059;AIRE:0.848582659685;RBPJ:0.842979075985;ELK1,4_GABP{A,B1}:0.804327837348;EVI1:0.804321348126;LMO2:0.799447433988;ZBTB16:0.770434373847;ZNF143:0.736580305385;NRF1:0.734017191561;MTF1:0.708810813766;CDX1,2,4:0.706981783537;TBX4,5:0.673827262128;HOX{A6,A7,B6,B7}:0.639852450124;ATF4:0.624147091594;MYOD1:0.621788151535;CDC5L:0.560591158066;SP1:0.557735727133;NKX2-1,4:0.522683415095;PAX8:0.449487081837;KLF4:0.447844400571;T:0.445966222724;SREBF1,2:0.444462112711;TFDP1:0.442317166458;PAX2:0.440111883188;YY1:0.433820012249;FOXP1:0.372431529492;ATF2:0.353947495985;IKZF2:0.335851350355;FOXN1:0.333339723217;NANOG:0.326470899729;TP53:0.312853134709;PRRX1,2:0.311654338275;NKX6-1,2:0.309054378681;POU1F1:0.302663334245;RREB1:0.300154899608;HOX{A4,D4}:0.269143223163;HSF1,2:0.189933870672;SOX17:0.186566718197;FOXA2:0.178718431717;PAX1,9:0.174305437295;ADNP_IRX_SIX_ZHX:0.160101282693;MZF1:0.129709040566;ZFP161:0.12825503212;ATF5_CREB3:0.124782540992;FOX{F1,F2,J1}:0.110267838936;BREu{core}:0.0999184294982;FOXO1,3,4:0.0851147831141;FOX{I1,J2}:0.0850745899303;NR6A1:0.0676709784718;HOX{A5,B5}:0.0671480218156;ZIC1..3:0.0561948667982;FOXM1:0.0210551368394;GATA6:0.00970722983891;HLF:-0.0112052859504;TEAD1:-0.0148127951484;MAZ:-0.0395657977411;EN1,2:-0.0833276106892;HNF4A_NR2F1,2:-0.0839337545473;GTF2I:-0.0984360356922;REST:-0.10690055583;FOXP3:-0.122656558363;GATA4:-0.134086048204;CEBPA,B_DDIT3:-0.146005859836;PAX4:-0.168052318615;EBF1:-0.207899398248;CREB1:-0.210180696728;ESRRA:-0.242622763643;NFE2L2:-0.24280932598;HNF1A:-0.244365180207;UFEwm:-0.258717561023;ARID5B:-0.304649545757;FOS_FOS{B,L1}_JUN{B,D}:-0.32128577496;HIF1A:-0.328128224975;GZF1:-0.354421624117;NR1H4:-0.357353506451;NFKB1_REL_RELA:-0.373982790085;PDX1:-0.397046493254;LHX3,4:-0.407596319298;NFIX:-0.413884094623;GCM1,2:-0.415123189427;MYFfamily:-0.425349538126;HOXA9_MEIS1:-0.441848581011;TBP:-0.451953786524;NR5A1,2:-0.46576880552;IKZF1:-0.470852344156;NANOG{mouse}:-0.473766532018;PPARG:-0.478127307774;BACH2:-0.478254816082;RFX1:-0.492834428496;NKX3-2:-0.49557128773;NFE2:-0.504834800803;MED-1{core}:-0.510825326993;GFI1B:-0.514243968349;TEF:-0.519751313769;FOSL2:-0.534718794515;JUN:-0.551442354327;TFAP2B:-0.560299339834;PRDM1:-0.564826299914;BPTF:-0.578713063329;AR:-0.607292037841;SPZ1:-0.648976309569;ZNF423:-0.653190309973;ELF1,2,4:-0.661505796016;SPI1:-0.666239079567;HAND1,2:-0.67345545321;TFAP2{A,C}:-0.677953736519;TLX1..3_NFIC{dimer}:-0.744973812286;AHR_ARNT_ARNT2:-0.753505943484;MYBL2:-0.757265542958;SPIB:-0.759493941114;MEF2{A,B,C,D}:-0.762558367898;NHLH1,2:-0.776266886816;NFIL3:-0.800195423757;FOX{D1,D2}:-0.804613726571;XBP1:-0.822807195402;ETS1,2:-0.831634570559;DMAP1_NCOR{1,2}_SMARC:-0.832777451564;RUNX1..3:-0.834436002047;MTE{core}:-0.843407043429;SOX5:-0.844146890924;ZBTB6:-0.908163917364;POU6F1:-0.931337316937;RFX2..5_RFXANK_RFXAP:-0.960815506472;HIC1:-0.987728875247;TLX2:-1.01489314087;SRF:-1.01616032412;NFATC1..3:-1.01911700577;TGIF1:-1.0250556525;POU3F1..4:-1.02907152052;ZNF238:-1.03671560692;NR3C1:-1.0425284893;PAX5:-1.04417222254;EGR1..3:-1.04520421592;IRF7:-1.0537679367;DBP:-1.05800713335;ZNF148:-1.06176650945;NFE2L1:-1.06479059879;GTF2A1,2:-1.07341681345;STAT2,4,6:-1.10696084056;HES1:-1.14966086301;PAX3,7:-1.16148987593;HMX1:-1.21306928352;RXR{A,B,G}:-1.23829951302;NKX3-1:-1.241638217;NKX2-2,8:-1.28932901022;FOXL1:-1.33321051069;HMGA1,2:-1.37322677046;TFCP2:-1.37616792665;TAL1_TCF{3,4,12}:-1.40608202145;IRF1,2:-1.4551679935;ALX4:-1.45950982826;EP300:-1.46464995004;MAFB:-1.47515083706;ESR1:-1.50363803215;HBP1_HMGB_SSRP1_UBTF:-1.50877714249;ATF6:-1.54718925048;GLI1..3:-1.68537940204;RXRA_VDR{dimer}:-1.69636557801;TFAP4:-1.77053931062;PAX6:-1.8686674496;SMAD1..7,9:-1.87034862697 | |top_motifs=OCT4_SOX2{dimer}:3.66649950416;VSX1,2:2.23629553094;PITX1..3:1.67601785373;STAT1,3:1.67439165974;FOXD3:1.54356774023;NFY{A,B,C}:1.42931959862;SNAI1..3:1.34378455217;CUX2:1.32814028367;STAT5{A,B}:1.32682635466;E2F1..5:1.2714013276;ALX1:1.24666654035;XCPE1{core}:1.23612004681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20730556514;SOX{8,9,10}:1.19593693489;bHLH_family:1.1877826742;NKX2-3_NKX2-5:1.18539230894;FOXQ1:1.17984029293;ZEB1:1.13394789892;ONECUT1,2:1.1257368559;PBX1:1.08154658527;LEF1_TCF7_TCF7L1,2:1.04831697254;RORA:1.04300148118;ZNF384:1.02398027048;SOX2:1.01318060253;TOPORS:0.980062177506;MYB:0.95372418912;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.953686649575;GFI1:0.928263086637;POU5F1:0.925715401481;POU2F1..3:0.908533470949;CRX:0.90011071007;PATZ1:0.859750206059;AIRE:0.848582659685;RBPJ:0.842979075985;ELK1,4_GABP{A,B1}:0.804327837348;EVI1:0.804321348126;LMO2:0.799447433988;ZBTB16:0.770434373847;ZNF143:0.736580305385;NRF1:0.734017191561;MTF1:0.708810813766;CDX1,2,4:0.706981783537;TBX4,5:0.673827262128;HOX{A6,A7,B6,B7}:0.639852450124;ATF4:0.624147091594;MYOD1:0.621788151535;CDC5L:0.560591158066;SP1:0.557735727133;NKX2-1,4:0.522683415095;PAX8:0.449487081837;KLF4:0.447844400571;T:0.445966222724;SREBF1,2:0.444462112711;TFDP1:0.442317166458;PAX2:0.440111883188;YY1:0.433820012249;FOXP1:0.372431529492;ATF2:0.353947495985;IKZF2:0.335851350355;FOXN1:0.333339723217;NANOG:0.326470899729;TP53:0.312853134709;PRRX1,2:0.311654338275;NKX6-1,2:0.309054378681;POU1F1:0.302663334245;RREB1:0.300154899608;HOX{A4,D4}:0.269143223163;HSF1,2:0.189933870672;SOX17:0.186566718197;FOXA2:0.178718431717;PAX1,9:0.174305437295;ADNP_IRX_SIX_ZHX:0.160101282693;MZF1:0.129709040566;ZFP161:0.12825503212;ATF5_CREB3:0.124782540992;FOX{F1,F2,J1}:0.110267838936;BREu{core}:0.0999184294982;FOXO1,3,4:0.0851147831141;FOX{I1,J2}:0.0850745899303;NR6A1:0.0676709784718;HOX{A5,B5}:0.0671480218156;ZIC1..3:0.0561948667982;FOXM1:0.0210551368394;GATA6:0.00970722983891;HLF:-0.0112052859504;TEAD1:-0.0148127951484;MAZ:-0.0395657977411;EN1,2:-0.0833276106892;HNF4A_NR2F1,2:-0.0839337545473;GTF2I:-0.0984360356922;REST:-0.10690055583;FOXP3:-0.122656558363;GATA4:-0.134086048204;CEBPA,B_DDIT3:-0.146005859836;PAX4:-0.168052318615;EBF1:-0.207899398248;CREB1:-0.210180696728;ESRRA:-0.242622763643;NFE2L2:-0.24280932598;HNF1A:-0.244365180207;UFEwm:-0.258717561023;ARID5B:-0.304649545757;FOS_FOS{B,L1}_JUN{B,D}:-0.32128577496;HIF1A:-0.328128224975;GZF1:-0.354421624117;NR1H4:-0.357353506451;NFKB1_REL_RELA:-0.373982790085;PDX1:-0.397046493254;LHX3,4:-0.407596319298;NFIX:-0.413884094623;GCM1,2:-0.415123189427;MYFfamily:-0.425349538126;HOXA9_MEIS1:-0.441848581011;TBP:-0.451953786524;NR5A1,2:-0.46576880552;IKZF1:-0.470852344156;NANOG{mouse}:-0.473766532018;PPARG:-0.478127307774;BACH2:-0.478254816082;RFX1:-0.492834428496;NKX3-2:-0.49557128773;NFE2:-0.504834800803;MED-1{core}:-0.510825326993;GFI1B:-0.514243968349;TEF:-0.519751313769;FOSL2:-0.534718794515;JUN:-0.551442354327;TFAP2B:-0.560299339834;PRDM1:-0.564826299914;BPTF:-0.578713063329;AR:-0.607292037841;SPZ1:-0.648976309569;ZNF423:-0.653190309973;ELF1,2,4:-0.661505796016;SPI1:-0.666239079567;HAND1,2:-0.67345545321;TFAP2{A,C}:-0.677953736519;TLX1..3_NFIC{dimer}:-0.744973812286;AHR_ARNT_ARNT2:-0.753505943484;MYBL2:-0.757265542958;SPIB:-0.759493941114;MEF2{A,B,C,D}:-0.762558367898;NHLH1,2:-0.776266886816;NFIL3:-0.800195423757;FOX{D1,D2}:-0.804613726571;XBP1:-0.822807195402;ETS1,2:-0.831634570559;DMAP1_NCOR{1,2}_SMARC:-0.832777451564;RUNX1..3:-0.834436002047;MTE{core}:-0.843407043429;SOX5:-0.844146890924;ZBTB6:-0.908163917364;POU6F1:-0.931337316937;RFX2..5_RFXANK_RFXAP:-0.960815506472;HIC1:-0.987728875247;TLX2:-1.01489314087;SRF:-1.01616032412;NFATC1..3:-1.01911700577;TGIF1:-1.0250556525;POU3F1..4:-1.02907152052;ZNF238:-1.03671560692;NR3C1:-1.0425284893;PAX5:-1.04417222254;EGR1..3:-1.04520421592;IRF7:-1.0537679367;DBP:-1.05800713335;ZNF148:-1.06176650945;NFE2L1:-1.06479059879;GTF2A1,2:-1.07341681345;STAT2,4,6:-1.10696084056;HES1:-1.14966086301;PAX3,7:-1.16148987593;HMX1:-1.21306928352;RXR{A,B,G}:-1.23829951302;NKX3-1:-1.241638217;NKX2-2,8:-1.28932901022;FOXL1:-1.33321051069;HMGA1,2:-1.37322677046;TFCP2:-1.37616792665;TAL1_TCF{3,4,12}:-1.40608202145;IRF1,2:-1.4551679935;ALX4:-1.45950982826;EP300:-1.46464995004;MAFB:-1.47515083706;ESR1:-1.50363803215;HBP1_HMGB_SSRP1_UBTF:-1.50877714249;ATF6:-1.54718925048;GLI1..3:-1.68537940204;RXRA_VDR{dimer}:-1.69636557801;TFAP4:-1.77053931062;PAX6:-1.8686674496;SMAD1..7,9:-1.87034862697 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10591-108D6;search_select_hide=table117:FF:10591-108D6 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | testicular germ cell embryonal carcinoma cell line:NEC14 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12351 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12351
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12351
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.558 |
| 10 | 10 | 0.526 |
| 100 | 100 | 0.405 |
| 101 | 101 | 0.658 |
| 102 | 102 | 0.458 |
| 103 | 103 | 0.0237 |
| 104 | 104 | 0.258 |
| 105 | 105 | 0.437 |
| 106 | 106 | 0.00965 |
| 107 | 107 | 0.203 |
| 108 | 108 | 0.797 |
| 109 | 109 | 0.467 |
| 11 | 11 | 0.467 |
| 110 | 110 | 0.942 |
| 111 | 111 | 0.212 |
| 112 | 112 | 0.643 |
| 113 | 113 | 0.0639 |
| 114 | 114 | 0.0768 |
| 115 | 115 | 0.442 |
| 116 | 116 | 0.889 |
| 117 | 117 | 0.969 |
| 118 | 118 | 0.66 |
| 119 | 119 | 0.533 |
| 12 | 12 | 0.756 |
| 120 | 120 | 0.189 |
| 121 | 121 | 0.576 |
| 122 | 122 | 0.406 |
| 123 | 123 | 0.382 |
| 124 | 124 | 0.0924 |
| 125 | 125 | 0.929 |
| 126 | 126 | 0.833 |
| 127 | 127 | 0.218 |
| 128 | 128 | 0.448 |
| 129 | 129 | 0.908 |
| 13 | 13 | 0.546 |
| 130 | 130 | 0.7 |
| 131 | 131 | 0.82 |
| 132 | 132 | 0.751 |
| 133 | 133 | 1.72092e-4 |
| 134 | 134 | 0.0174 |
| 135 | 135 | 0.015 |
| 136 | 136 | 0.094 |
| 137 | 137 | 0.529 |
| 138 | 138 | 0.136 |
| 139 | 139 | 0.358 |
| 14 | 14 | 0.853 |
| 140 | 140 | 0.746 |
| 141 | 141 | 0.83 |
| 142 | 142 | 0.448 |
| 143 | 143 | 0.00328 |
| 144 | 144 | 0.277 |
| 145 | 145 | 0.314 |
| 146 | 146 | 0.278 |
| 147 | 147 | 0.897 |
| 148 | 148 | 0.0448 |
| 149 | 149 | 0.00668 |
| 15 | 15 | 0.138 |
| 150 | 150 | 0.379 |
| 151 | 151 | 0.037 |
| 152 | 152 | 0.1 |
| 153 | 153 | 0.679 |
| 154 | 154 | 0.441 |
| 155 | 155 | 0.607 |
| 156 | 156 | 0.0876 |
| 157 | 157 | 0.548 |
| 158 | 158 | 0.723 |
| 159 | 159 | 0.987 |
| 16 | 16 | 0.384 |
| 160 | 160 | 0.767 |
| 161 | 161 | 0.879 |
| 162 | 162 | 0.601 |
| 163 | 163 | 0.884 |
| 164 | 164 | 0.738 |
| 165 | 165 | 0.997 |
| 166 | 166 | 0.308 |
| 167 | 167 | 0.344 |
| 168 | 168 | 0.355 |
| 169 | 169 | 0.281 |
| 17 | 17 | 0.682 |
| 18 | 18 | 0.878 |
| 19 | 19 | 0.182 |
| 2 | 2 | 0.369 |
| 20 | 20 | 0.939 |
| 21 | 21 | 0.736 |
| 22 | 22 | 0.209 |
| 23 | 23 | 0.00876 |
| 24 | 24 | 0.675 |
| 25 | 25 | 0.787 |
| 26 | 26 | 0.861 |
| 27 | 27 | 0.594 |
| 28 | 28 | 0.563 |
| 29 | 29 | 0.486 |
| 3 | 3 | 0.221 |
| 30 | 30 | 0.537 |
| 31 | 31 | 0.463 |
| 32 | 32 | 0.00413 |
| 33 | 33 | 0.534 |
| 34 | 34 | 0.591 |
| 35 | 35 | 0.831 |
| 36 | 36 | 0.742 |
| 37 | 37 | 0.407 |
| 38 | 38 | 0.829 |
| 39 | 39 | 0.365 |
| 4 | 4 | 0.866 |
| 40 | 40 | 0.293 |
| 41 | 41 | 0.294 |
| 42 | 42 | 0.84 |
| 43 | 43 | 0.231 |
| 44 | 44 | 0.769 |
| 45 | 45 | 0.602 |
| 46 | 46 | 0.614 |
| 47 | 47 | 0.0556 |
| 48 | 48 | 0.437 |
| 49 | 49 | 0.28 |
| 5 | 5 | 0.0557 |
| 50 | 50 | 0.67 |
| 51 | 51 | 0.897 |
| 52 | 52 | 0.527 |
| 53 | 53 | 0.832 |
| 54 | 54 | 0.479 |
| 55 | 55 | 0.535 |
| 56 | 56 | 0.88 |
| 57 | 57 | 0.694 |
| 58 | 58 | 0.0631 |
| 59 | 59 | 0.258 |
| 6 | 6 | 0.688 |
| 60 | 60 | 0.274 |
| 61 | 61 | 0.418 |
| 62 | 62 | 0.018 |
| 63 | 63 | 0.354 |
| 64 | 64 | 0.747 |
| 65 | 65 | 0.141 |
| 66 | 66 | 0.451 |
| 67 | 67 | 0.725 |
| 68 | 68 | 0.261 |
| 69 | 69 | 0.488 |
| 7 | 7 | 0.824 |
| 70 | 70 | 0.0346 |
| 71 | 71 | 0.177 |
| 72 | 72 | 0.619 |
| 73 | 73 | 0.0363 |
| 74 | 74 | 0.95 |
| 75 | 75 | 0.719 |
| 76 | 76 | 0.824 |
| 77 | 77 | 0.149 |
| 78 | 78 | 0.92 |
| 79 | 79 | 0.0779 |
| 8 | 8 | 0.0711 |
| 80 | 80 | 0.135 |
| 81 | 81 | 0.266 |
| 82 | 82 | 0.336 |
| 83 | 83 | 0.0196 |
| 84 | 84 | 0.907 |
| 85 | 85 | 0.178 |
| 86 | 86 | 0.806 |
| 87 | 87 | 0.206 |
| 88 | 88 | 0.586 |
| 89 | 89 | 0.0502 |
| 9 | 9 | 0.108 |
| 90 | 90 | 0.123 |
| 91 | 91 | 0.291 |
| 92 | 92 | 0.0612 |
| 93 | 93 | 0.277 |
| 94 | 94 | 0.515 |
| 95 | 95 | 0.677 |
| 96 | 96 | 0.0398 |
| 97 | 97 | 0.731 |
| 98 | 98 | 0.906 |
| 99 | 99 | 0.733 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12351
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000586 germ cell
DOID:3095 germ cell and embryonal cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
UBERON:0000473 testis
UBERON:0000922 embryo
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
