FF:10603-108E9: Difference between revisions

Latest revision as of 14:30, 3 June 2020

Name:	embryonic pancreas cell line:2C6
Species:	Human (Homo sapiens)
Library ID:	CNhs11814
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	NA
sex	unknown
age	19 week embryo
cell type	unclassifiable
cell line	2C6
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004815

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11814		CAGE		DRX007875		DRR008747

Accession ID Hg19

Library id		BAM		CTSS
CNhs11814		DRZ000172		DRZ001557

Accession ID Hg38

Library id		BAM		CTSS
CNhs11814		DRZ011522		DRZ012907

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.115
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.209
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.029
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.169
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0762
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0148
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.192
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11814

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.292
MA0003.1	MA0003.1	0.52
MA0004.1	MA0004.1	0.0105
MA0006.1	MA0006.1	0.976
MA0007.1	MA0007.1	0.433
MA0009.1	MA0009.1	0.326
MA0014.1	MA0014.1	0.397
MA0017.1	MA0017.1	0.0327
MA0018.2	MA0018.2	0.317
MA0019.1	MA0019.1	0.6
MA0024.1	MA0024.1	0.0523
MA0025.1	MA0025.1	0.608
MA0027.1	MA0027.1	0.508
MA0028.1	MA0028.1	0.19
MA0029.1	MA0029.1	0.106
MA0030.1	MA0030.1	0.0171
MA0031.1	MA0031.1	0.525
MA0035.2	MA0035.2	0.00759
MA0038.1	MA0038.1	0.682
MA0039.2	MA0039.2	0.0231
MA0040.1	MA0040.1	0.233
MA0041.1	MA0041.1	0.2
MA0042.1	MA0042.1	0.472
MA0043.1	MA0043.1	0.743
MA0046.1	MA0046.1	0.0627
MA0047.2	MA0047.2	0.0681
MA0048.1	MA0048.1	0.0346
MA0050.1	MA0050.1	0.0701
MA0051.1	MA0051.1	0.839
MA0052.1	MA0052.1	0.128
MA0055.1	MA0055.1	1.89298e-4
MA0057.1	MA0057.1	0.673
MA0058.1	MA0058.1	0.0453
MA0059.1	MA0059.1	0.135
MA0060.1	MA0060.1	0.805
MA0061.1	MA0061.1	0.131
MA0062.2	MA0062.2	0.753
MA0065.2	MA0065.2	0.00103
MA0066.1	MA0066.1	0.784
MA0067.1	MA0067.1	0.693
MA0068.1	MA0068.1	0.362
MA0069.1	MA0069.1	0.63
MA0070.1	MA0070.1	0.769
MA0071.1	MA0071.1	0.238
MA0072.1	MA0072.1	0.124
MA0073.1	MA0073.1	0.753
MA0074.1	MA0074.1	0.877
MA0076.1	MA0076.1	0.744
MA0077.1	MA0077.1	0.716
MA0078.1	MA0078.1	0.551
MA0079.2	MA0079.2	0.539
MA0080.2	MA0080.2	0.302
MA0081.1	MA0081.1	0.671
MA0083.1	MA0083.1	0.254
MA0084.1	MA0084.1	0.395
MA0087.1	MA0087.1	0.668
MA0088.1	MA0088.1	0.173
MA0090.1	MA0090.1	0.393
MA0091.1	MA0091.1	0.155
MA0092.1	MA0092.1	0.197
MA0093.1	MA0093.1	0.0326
MA0099.2	MA0099.2	4.32089e-14
MA0100.1	MA0100.1	0.93
MA0101.1	MA0101.1	0.0861
MA0102.2	MA0102.2	0.309
MA0103.1	MA0103.1	0.134
MA0104.2	MA0104.2	0.00747
MA0105.1	MA0105.1	0.699
MA0106.1	MA0106.1	0.351
MA0107.1	MA0107.1	0.0825
MA0108.2	MA0108.2	0.0149
MA0111.1	MA0111.1	0.304
MA0112.2	MA0112.2	0.679
MA0113.1	MA0113.1	0.375
MA0114.1	MA0114.1	0.0045
MA0115.1	MA0115.1	0.11
MA0116.1	MA0116.1	0.255
MA0117.1	MA0117.1	0.128
MA0119.1	MA0119.1	0.0167
MA0122.1	MA0122.1	0.0648
MA0124.1	MA0124.1	0.401
MA0125.1	MA0125.1	0.728
MA0131.1	MA0131.1	0.0144
MA0135.1	MA0135.1	0.425
MA0136.1	MA0136.1	0.922
MA0137.2	MA0137.2	0.545
MA0138.2	MA0138.2	0.762
MA0139.1	MA0139.1	0.675
MA0140.1	MA0140.1	0.00261
MA0141.1	MA0141.1	0.176
MA0142.1	MA0142.1	0.343
MA0143.1	MA0143.1	0.997
MA0144.1	MA0144.1	0.751
MA0145.1	MA0145.1	0.36
MA0146.1	MA0146.1	0.668
MA0147.1	MA0147.1	8.10496e-4
MA0148.1	MA0148.1	0.00399
MA0149.1	MA0149.1	0.0457
MA0150.1	MA0150.1	0.0576
MA0152.1	MA0152.1	0.841
MA0153.1	MA0153.1	0.657
MA0154.1	MA0154.1	0.94
MA0155.1	MA0155.1	0.761
MA0156.1	MA0156.1	0.223
MA0157.1	MA0157.1	0.614
MA0159.1	MA0159.1	0.103
MA0160.1	MA0160.1	0.0361
MA0162.1	MA0162.1	0.216
MA0163.1	MA0163.1	0.139
MA0164.1	MA0164.1	0.802
MA0258.1	MA0258.1	0.697
MA0259.1	MA0259.1	0.467

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11814

Novel motif	Logo	P-value
1	1	0.774
10	10	0.734
100	100	0.922
101	101	0.83
102	102	0.22
103	103	0.0712
104	104	0.604
105	105	0.0817
106	106	0.0446
107	107	0.476
108	108	0.765
109	109	0.011
11	11	0.999
110	110	0.184
111	111	0.0253
112	112	0.342
113	113	0.244
114	114	0.367
115	115	0.319
116	116	0.474
117	117	0.655
118	118	0.882
119	119	0.403
12	12	0.518
120	120	0.453
121	121	0.706
122	122	0.0216
123	123	0.304
124	124	0.53
125	125	0.775
126	126	0.982
127	127	0.975
128	128	0.699
129	129	0.239
13	13	0.0396
130	130	0.108
131	131	0.0669
132	132	0.627
133	133	0.0224
134	134	0.227
135	135	0.0508
136	136	0.924
137	137	0.586
138	138	0.705
139	139	0.0549
14	14	0.21
140	140	0.877
141	141	0.7
142	142	0.915
143	143	0.514
144	144	0.492
145	145	0.411
146	146	0.0786
147	147	0.2
148	148	0.256
149	149	0.66
15	15	0.0135
150	150	0.855
151	151	0.585
152	152	0.775
153	153	0.619
154	154	0.688
155	155	0.669
156	156	0.45
157	157	0.406
158	158	0.739
159	159	0.472
16	16	0.964
160	160	0.488
161	161	0.215
162	162	0.955
163	163	0.674
164	164	0.52
165	165	0.953
166	166	0.0884
167	167	0.41
168	168	0.819
169	169	0.985
17	17	0.177
18	18	0.486
19	19	0.117
2	2	0.871
20	20	0.114
21	21	0.654
22	22	0.319
23	23	0.655
24	24	0.581
25	25	0.477
26	26	0.627
27	27	0.498
28	28	0.245
29	29	0.801
3	3	0.684
30	30	0.823
31	31	0.6
32	32	0.00421
33	33	0.583
34	34	0.155
35	35	0.635
36	36	0.0707
37	37	0.204
38	38	0.0677
39	39	0.732
4	4	0.298
40	40	0.0393
41	41	0.32
42	42	0.103
43	43	0.633
44	44	0.0855
45	45	0.0841
46	46	0.956
47	47	0.866
48	48	0.991
49	49	0.148
5	5	0.471
50	50	0.317
51	51	0.275
52	52	0.369
53	53	0.729
54	54	0.159
55	55	0.254
56	56	0.261
57	57	0.0385
58	58	0.897
59	59	0.435
6	6	0.393
60	60	0.606
61	61	0.183
62	62	0.588
63	63	0.503
64	64	0.638
65	65	0.396
66	66	0.00831
67	67	0.693
68	68	0.76
69	69	0.772
7	7	0.212
70	70	0.136
71	71	0.36
72	72	0.455
73	73	0.639
74	74	0.711
75	75	0.68
76	76	0.356
77	77	0.677
78	78	0.804
79	79	0.049
8	8	0.631
80	80	0.241
81	81	0.0642
82	82	0.185
83	83	0.812
84	84	0.189
85	85	0.237
86	86	0.198
87	87	0.534
88	88	0.631
89	89	0.669
9	9	0.64
90	90	0.387
91	91	0.724
92	92	0.343
93	93	0.693
94	94	0.737
95	95	0.174
96	96	0.953
97	97	0.327
98	98	0.026
99	99	0.588

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11814

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0001264 pancreas

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004815
+|accession_numbers=CAGE;DRX007875;DRR008747;DRZ000172;DRZ001557;DRZ011522;DRZ012907
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.81!72.88!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!1.69!60.93!TFAP2C;;chr2:172967621..172967637,-!p1@DLX2!1.42!66.90!DLX2;;chr12:66218598..66218645,+!p2@HMGA2!1.39!105.14!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!1.37!57.35!NCOA7;;chr6:10415484..10415508,-!p3@TFAP2A!1.37!22.70!TFAP2A;;chr20:42543441..42543497,+!p1@TOX2!1.35!93.19!TOX2;;chr20:42543506..42543549,+!p2@TOX2!1.33!47.79!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.32!578.25!HMGA1;;chr17:41622925..41622976,-!p3@ETV4!1.31!28.67!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!1.28!163.68!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.28!17.92!SOX7;;chr11:65667884..65667895,-!p2@FOSL1!1.26!65.71!FOSL1;;chr21:38071430..38071456,+!p1@SIM2!1.25!16.73!SIM2;;chr12:27485785..27485816,+!p1@ARNTL2!1.23!109.91!ARNTL2;;chr6:126240442..126240459,+!p4@NCOA7!1.23!20.31!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!1.22!38.23!FOXC2;;chr2:45168997..45169020,+!p4@SIX3!1.22!15.53!SIX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.09!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!1.19!14.34!LHX6;;chr2:45168834..45168847,+!p2@SIX3!1.19!14.34!SIX3;;chr8:67525443..67525459,-!p2@MYBL1!1.16!20.31!MYBL1;;chr15:67418119..67418162,+!p5@SMAD3!1.14!14.34!SMAD3;;chr17:70117153..70117174,+!p1@SOX9!1.13!127.84!SOX9;;chr6:10412392..10412409,-!p4@TFAP2A!1.13!14.34!TFAP2A;;chr20:55205791..55205817,+!p3@TFAP2C!1.11!11.95!TFAP2C;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.98!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.59!DRAP1;;chr9:110252035..110252057,-!p1@KLF4!1.05!164.87!KLF4;;chr11:65667846..65667868,-!p1@FOSL1!1.02!252.09!FOSL1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.34!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.01!35.84!SIX1;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.56!SHOX2;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.75!TFAP2A;;chr12:27485823..27485868,+!p2@ARNTL2!0.97!34.65!ARNTL2;;chr11:61520075..61520136,+!p1@C11orf9!0.97!17.92!C11orf9;;chr12:66218378..66218401,+!p6@HMGA2!0.97!13.14!HMGA2;;chr13:45009301..45009320,-!p7@TSC22D1!0.97!8.36!TSC22D1;;chr2:176969228..176969260,+!p1@HOXD11!0.97!8.36!HOXD11;;chr15:67418099..67418118,+!p16@SMAD3!0.97!8.36!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.97!8.36!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.36!HOXB6;;chr2:101436564..101436647,+!p1@NPAS2!0.96!172.04!NPAS2;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.92!SATB2;;chr12:19592405..19592492,+!p2@AEBP2!0.94!68.10!AEBP2;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.75!HOXB7;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.56!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.56!TBX18;;chr3:12329358..12329393,+!p3@PPARG!0.93!19.12!PPARG;;chr15:67418047..67418093,+!p4@SMAD3!0.93!9.56!SMAD3;;chr15:96869511..96869525,+!p16@NR2F2!0.93!8.36!NR2F2;;chr6:34204672..34204692,+!p1@HMGA1!0.92!866.18!HMGA1;;chr12:19592602..19592648,+!p1@AEBP2!0.92!88.41!AEBP2;;chr3:12329397..12329433,+!p2@PPARG!0.91!16.73!PPARG;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.14!NFIB;;chr3:169381420..169381535,-!p1@MECOM!0.91!8.36!MECOM;;chr2:172950227..172950249,+!p2@DLX1!0.91!7.17!DLX1;;chr6:34210478..34210481,+!p8@HMGA1!0.91!7.17!HMGA1;;chr9:124976154..124976177,-!p5@LHX6!0.91!7.17!LHX6;;chr17:48046543..48046575,+!p2@DLX4!0.91!7.17!DLX4;;chr9:129376201..129376225,+!p1@LMX1B!0.91!7.17!LMX1B;;chr17:41622765..41622821,-!p2@ETV4!0.90!10.75!ETV4;;chr1:120190761..120190782,-!p2@ZNF697!0.89!9.56!ZNF697;;chr7:26191809..26191890,+!p1@NFE2L3!0.88!34.65!NFE2L3;;chr8:103665947..103665981,-!p3@KLF10!0.88!9.56!KLF10;;chr10:104155659..104155676,+!p4@NFKB2!0.88!8.36!NFKB2;;chr12:27485762..27485776,+!p3@ARNTL2!0.87!17.92!ARNTL2;;chr17:79885633..79885645,-!p4@MAFG!0.86!10.75!MAFG;;chr20:32274179..32274213,-!p1@E2F1!0.85!43.01!E2F1;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.36!FOXF2;;chr10:8096772..8096787,+!p2@GATA3!0.84!7.17!GATA3;;chr19:4153613..4153652,+!p1@CREB3L3!0.84!5.97!CREB3L3;;chr15:67391010..67391046,+!p13@SMAD3!0.84!5.97!SMAD3;;chr17:48045917..48045977,+!p1@DLX4!0.84!5.97!DLX4;;chr2:100721328..100721348,-!p4@AFF3!0.84!5.97!AFF3;;chr2:176969179..176969226,+!p2@HOXD11!0.84!5.97!HOXD11;;chr2:45168959..45168990,+!p6@SIX3!0.84!5.97!SIX3;;chr8:11561684..11561751,+!p1@GATA4!0.84!5.97!GATA4;;chr5:180288248..180288291,-!p1@ZFP62!0.83!38.23!ZFP62;;chr17:41622834..41622883,-!p6@ETV4!0.83!7.17!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.36!SATB2;;chr12:96588368..96588394,+!p3@ELK3!0.81!15.53!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.81!13.14!NR1H3;;chr1:25256756..25256774,-!p1@RUNX3!0.81!10.75!RUNX3;;chr11:67007535..67007546,+!p7@KDM2A!0.81!8.36!KDM2A;;chr12:66218443..66218461,+!p8@HMGA2!0.81!7.17!HMGA2;;chr13:45010939..45011033,-!p1@TSC22D1!0.80!378.73!TSC22D1;;chr12:124873357..124873401,-!p1@NCOR2!0.80!66.90!NCOR2;;chr3:141868357..141868393,-!p3@TFDP2!0.80!38.23!TFDP2;;chr5:178487354..178487408,+!p1@ZNF354C!0.80!16.73!ZNF354C;;chr6:126240463..126240489,+!p6@NCOA7!0.80!5.97!NCOA7;;chr22:22863052..22863133,-!p1@ZNF280B!0.79!14.34!ZNF280B;;chr3:185826855..185826911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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a2C6.CNhs11814.10603-108E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a2C6.CNhs11814.10603-108E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a2C6.CNhs11814.10603-108E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a2C6.CNhs11814.10603-108E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a2C6.CNhs11814.10603-108E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10603-108E9
 |is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264
 |is_obsolete=
+|library_id=CNhs11814
+|library_id_phase_based=2:CNhs11814
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10603
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10603
 |name=embryonic pancreas cell line:2C6
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11814,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 59: / Line 74: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=108E9
+|rna_tube_id=1.08E+11
 |rna_weight_ug=36.59749
 |sample_age=19 week embryo
@@ Line 84: / Line 99: @@
 |top_motifs=FOXQ1:2.34089613867;PAX8:1.59787344818;RORA:1.1750863936;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16498918786;POU1F1:1.15258191936;RBPJ:0.980318502177;ONECUT1,2:0.893879372681;bHLH_family:0.854518545106;FOX{F1,F2,J1}:0.853841189314;PAX1,9:0.847008321051;POU6F1:0.814186854527;NANOG:0.812235474758;ALX1:0.802702673266;FOX{I1,J2}:0.793982633285;STAT5{A,B}:0.742904589309;FOXD3:0.677852369026;PDX1:0.673001845384;GLI1..3:0.583689877324;CEBPA,B_DDIT3:0.574381803696;ADNP_IRX_SIX_ZHX:0.550516944813;NFE2L2:0.53887873772;PAX4:0.521699869747;BPTF:0.519679540127;E2F1..5:0.513472482583;VSX1,2:0.503477906876;EGR1..3:0.485826514528;BREu{core}:0.47003553196;NFIX:0.46553159524;LEF1_TCF7_TCF7L1,2:0.46530344005;PRRX1,2:0.462234255831;RXR{A,B,G}:0.437950917335;FOS_FOS{B,L1}_JUN{B,D}:0.435207159563;HOX{A5,B5}:0.416474062662;OCT4_SOX2{dimer}:0.411644290463;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.411274541738;TFAP2B:0.399685550516;FOXA2:0.383718057002;TFAP2{A,C}:0.380030545049;NKX2-1,4:0.374352067433;SOX17:0.354619778225;POU5F1:0.346186328206;NR5A1,2:0.32167418885;LHX3,4:0.306539031687;ZNF423:0.293518239695;RXRA_VDR{dimer}:0.288790151858;ZNF143:0.287407623452;TLX1..3_NFIC{dimer}:0.27144178393;NR3C1:0.270910411902;NFE2:0.261996999376;ZFP161:0.261691202045;ZNF148:0.258096016323;NFIL3:0.253061010446;GATA6:0.248312837199;NR1H4:0.21859281061;HES1:0.214606974752;HOX{A6,A7,B6,B7}:0.205999564053;NRF1:0.204881423804;PITX1..3:0.195198132483;AHR_ARNT_ARNT2:0.190393239172;TBX4,5:0.181202340361;NR6A1:0.178623835529;XCPE1{core}:0.178623789224;BACH2:0.172432071215;ATF4:0.169445289223;PAX5:0.168295597228;TP53:0.166163388272;ELK1,4_GABP{A,B1}:0.1538063492;HNF4A_NR2F1,2:0.145938743441;HLF:0.130878303677;CUX2:0.128944749518;RFX1:0.125257692421;MYB:0.110035178189;EN1,2:0.106619214341;HNF1A:0.0919620213198;CDC5L:0.0909850614541;MYOD1:0.0853883731232;FOSL2:0.0623083828374;AIRE:0.0598319455756;ESR1:0.057554249649;NFKB1_REL_RELA:0.0228689771179;TFDP1:0.0216308020781;IRF7:0.00631240969645;NKX3-1:0.00413087198326;HIC1:-0.00474281735581;SNAI1..3:-0.00663945216411;IKZF2:-0.0111159557028;TEAD1:-0.0190512282886;PRDM1:-0.0268103543939;ZBTB16:-0.0335955952235;YY1:-0.0343723367453;PATZ1:-0.0392388422065;POU2F1..3:-0.0564594177945;FOXP1:-0.0642959228415;SOX5:-0.078065705041;REST:-0.0797420613352;SP1:-0.091286078729;PAX2:-0.096911285239;ETS1,2:-0.103084185274;T:-0.10824262657;ZEB1:-0.111216203428;TEF:-0.113044695391;TAL1_TCF{3,4,12}:-0.114040152911;GTF2I:-0.114043636264;PBX1:-0.118110608241;GTF2A1,2:-0.11834611812;SOX{8,9,10}:-0.123262049961;MED-1{core}:-0.131106005188;FOX{D1,D2}:-0.156419393762;HOXA9_MEIS1:-0.166209694785;ATF2:-0.181575124389;ELF1,2,4:-0.190227444917;ZBTB6:-0.191512535953;MTF1:-0.200885016895;PAX3,7:-0.22432905634;PPARG:-0.232298995395;AR:-0.240760612637;HOX{A4,D4}:-0.242975291751;MEF2{A,B,C,D}:-0.250335461883;NKX2-3_NKX2-5:-0.252604366258;SPIB:-0.255991621196;TFAP4:-0.260046090282;TFCP2:-0.27005707131;NFY{A,B,C}:-0.28085643803;NHLH1,2:-0.28966236094;LMO2:-0.293491225813;DMAP1_NCOR{1,2}_SMARC:-0.296511459401;XBP1:-0.306593713194;NKX2-2,8:-0.315569905143;POU3F1..4:-0.32002618054;GFI1:-0.32343351782;IKZF1:-0.339337619306;SOX2:-0.366435949595;HAND1,2:-0.383627501359;SPI1:-0.389218558972;RUNX1..3:-0.417241346798;ATF5_CREB3:-0.418126755128;NFATC1..3:-0.420550357761;GZF1:-0.436308391121;RREB1:-0.450365596384;FOXL1:-0.478078662164;RFX2..5_RFXANK_RFXAP:-0.47965212974;MAZ:-0.509744999444;EBF1:-0.521937188515;STAT2,4,6:-0.526045694555;JUN:-0.534903969287;SRF:-0.542026127418;CRX:-0.548871782053;TOPORS:-0.555017261684;SMAD1..7,9:-0.556027381403;FOXM1:-0.576970143904;ESRRA:-0.588305205972;CDX1,2,4:-0.594348920676;ZNF238:-0.60470432322;ZNF384:-0.643842713625;IRF1,2:-0.67779945029;HMGA1,2:-0.698387822357;PAX6:-0.704914359341;MYBL2:-0.718589193277;GFI1B:-0.722187983045;ZIC1..3:-0.724072820958;CREB1:-0.755586565961;SREBF1,2:-0.759486646018;FOXO1,3,4:-0.771266142245;UFEwm:-0.778742290307;HBP1_HMGB_SSRP1_UBTF:-0.791633096893;MZF1:-0.798953256309;ARID5B:-0.80644830762;NKX3-2:-0.822001240174;MTE{core}:-0.824878334534;EVI1:-0.840603426298;DBP:-0.89039736508;ALX4:-0.897272705494;HSF1,2:-0.907623779788;MYFfamily:-0.926375429678;NKX6-1,2:-0.955230450185;TBP:-0.956668940032;KLF4:-0.97593943271;NFE2L1:-0.979512269427;NANOG{mouse}:-1.00538708946;MAFB:-1.02483343386;GATA4:-1.04236944154;STAT1,3:-1.11104525963;FOXN1:-1.13367506383;SPZ1:-1.15550453389;TGIF1:-1.18489071858;FOXP3:-1.32255470604;TLX2:-1.34586539555;EP300:-1.365738399;HIF1A:-1.40803711443;HMX1:-1.43110334727;ATF6:-1.59154530508;GCM1,2:-1.67307935001
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10603-108E9;search_select_hide=table117:FF:10603-108E9
 }}

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FF:10603-108E9: Difference between revisions

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Latest revision as of 14:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0