FF:10697-109G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005692 | ||
|accession_numbers=CAGE;DRX007983;DRR008855;DRZ000280;DRZ001665;DRZ011630;DRZ013015 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:10697-109G4 | |fonse_cell_line=FF:10697-109G4 | ||
|fonse_cell_line_closure=FF:10697-109G4 | |fonse_cell_line_closure=FF:10697-109G4 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10697-109G4 | |id=FF:10697-109G4 | ||
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346 | |is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346 | ||
|is_obsolete= | |||
|library_id=CNhs11830 | |||
|library_id_phase_based=2:CNhs11830 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10697 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10697 | |||
|name=peripheral neuroectodermal tumor cell line:KU-SN | |name=peripheral neuroectodermal tumor cell line:KU-SN | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11830,LSID829,release010,COMPLETED | |profile_hcage=CNhs11830,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0899582601536372,0,-0.0763668975198568,0.393526982176495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306905436298626,0,0,0,0,0,0.342748537568188,0,0,0.383754076349995,0,0,0,0,0,0,0,0,0,0.0703597699327489,0,0,-0.035211949273883,0.130893964993104,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.231338307998209,1.85338483339425,0,0.130893964993104,0.033901603750499,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.130893964993104,0,0,0,0,0,0,0,0,0,0.092006776989145,0,0,0,0,0,-0.207685618681698,0.065446982496552,0,0,0.22104492742639,-0.054767455081265,0.0351798849663744,0,0,0,0.0328586137553977,0.428570909123225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0345203710706431,0.274009106071021,0,0,0.0277681098940255,0.165304203287776,0,0,0.130893964993104,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0703597699327489,0.0328586137553977,0,0,0.312859895229208,0,0.18401355397829,0.130893964993104,0,0,0,0,0,-0.176819105352816,0.0351798849663744,0.298557776407359,-0.073155372590723,0.065446982496552,0,0.490706746545044,0,0,0,0.0351798849663744,0,0.130893964993104,0,0,0,-0.128119866952565,0,0.133601002388975,0.365923152562063,0.231338307998209,0,0,-0.0186252810838506,-0.0741339229001987,0.467546499161969,-0.0020736231476249,0.0625497039157359,0,0,0,0,-0.270240669334324,0,-0.0505197138609917,0.43399049780544,0.629710532669433,-0.255992006750608,0.257147398448026,0,0,0,0.125097684089216,0.359350891846063,0,0,-0.121779851751874,-0.146169733594285,0,0,1.83718353858588,0,0.239720099064888,-0.242302464230555,0,0.19796686042098,0,0,0,0,0,0,0,0.516710666128858,0.932598733575995,0,0,-0.0574934668214365,0.273963743452053,0.134611072295694,0.0703597699327489,0.0703597699327489,0,-0.0265398414053748,0,0,-0.373286155956567,-0.11939770529865,0.232788973250455,0.315255104530724,0,0.592976375314241,-0.125330392171608,-0.592737085560564,0.251837487461339,0.293304584465107,-0.189981719549847,0,-0.0696403931640865,-0.166586473883602,-0.0867514482073279,-0.468666284141179,0.060613427739588,-0.0584021652841922,-0.374521751189096,0,0,-0.0775089264793031,-0.204272895500503,0,0,-0.306101160498483,0.088506303361353,-0.327934030801734,-0.259764157563031,0.0713055275836501,0.17252945124725,0.631640293367598,0.0101100462653746,-0.0572042244116114,0.236387453417235,0,0.932598733575995,-0.0497087135949838,-0.0068319734744171,-0.511903001036302,-0.431812619200389,0,-0.20996835573996,-0.0683442610773682,0.181116136495656,-0.0669258919082853,-0.143990543804239,0,0.0703597699327489,-0.039425402334511,0,0,-0.0973416317119065,0.0156872596835273,0,0.333649287774666,-0.265483036959146,0.368096778575477,0,-0.0100947742480958,-0.120877140377942,-0.231839097856034,0,0.212060310722891,0.179299907595432,0,-0.103663012252357,0,0.0993311225416695,0.035472934685863,-0.0946309264062539,-0.10953491016253,0.290071958391168,0.387961974141195,0.0376812989443063,0.22104492742639,-0.788939864790226,0.0919827945292455,0.143211475522921,0.0127234842752937,-0.24589957912436,0.00795657190064114,-0.0823717751058362,-0.252840564013471,0,-0.79747826659364,0,0.267673414090798,0,0.141101019156846,-0.309095443475031,0.748835611303023,-0.523668174965196,0,0.0409472195561733,-0.227260046037048,0,-0.374303926473556,-0.0043526434902961,0,-0.150367083334639,-0.180985300383725,-0.0608013888991103,-0.138989456679195,0,-0.0872156632366472,0.854639594737645,0,0.224836011103497,0.176621667512547,0.0703597699327489,-0.139101242310367,0.0936615809396132,-0.111392128006079,-0.0456113035021852,0.0703597699327489,0,0.783293653205316,0,0.274009106071021,-0.60592806381803,0.117620245263859,-0.207685618681698,-0.253326341486756,-0.233259083320645,-0.108622809454255,0,0.231338307998209,0.053810542033033,0,0.00533745810379195,0,0,-0.0582714640178453,0,0,0,0,-0.07959653655866,0,0,0,0,0,0,0,-0.336837597974397,-0.170819776238158,0.797692437998258,0.240910953443862,0,0,0,0,0,-0.129406115216345,0,0,0.181377024852849,0.136262446982589,-0.12301741567642,0.0351798849663744,0.0351798849663744,0,0,-0.145363632620726,-0.0192230081164336,0.0703597699327489,-0.000968741504527582,0,0.0351798849663744,0,0.231338307998209,0.0447529752038928,0,0,0.137004553035511,0,0.0731635079394401,-0.161401101199354,0,0,0,0.673128264268161,0,0,0,0,-0.0909347960412676,0,0,-0.0333479036650308,0,-0.181092984716821,0.0493120854462627,0.0480287520589449,-0.0589895710622281,-0.244378038187132,-0.996760445419254,0,0,-0.261347131789888,0,0.00079616966241986,-0.094515643804333,-0.0823702229656663,0.18401355397829,0.0189502234870571,0,0,0,0,0.130893964993104,0,1.1161208603876,0,0,0,0,0,0,0,0,0,0,0,-0.51293834705428,0.18178504941251,0,0,0,0.0703597699327489,0,0,0,-0.0241060230789031,-0.0582775744888632,0,0,0,0,0,0.130893964993104,0,0,0.148260215567168,0,0,0,0,0,0.033901603750499,0,0.0703597699327489,0,0,0.603040410374699,0,0,-0.207002362260765,0,0,0,0,0,0,0.0209909441603859,0,0,0,0,0,0,0.288778619241488,-0.0763668975198568,0,0.0703597699327489,0,0,0,0,0,-0.00082419213506968,0,0.18401355397829,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.0899582601536372,0,0.0703597699327489,0,0,0,0,0.156429947614604,0,0,0,0,0,0,0,0,0,0,0,0.065446982496552,0,0,-0.986405554541965,0.218263040258448,-0.502280907055931,-0.129929921105248,0,0,-0.197448467666667,0,0,0,0,0,0,0.00383946093784739,0,0,0,0,0,0,0,0,0.386321997579684,0,0,0,0,0,0,0,0,0,0.274009106071021,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.342748537568188,0,0,0.255132472417196,0,0,0,0,0,0,0.0243831532505584,0.131564880855885,-0.0321680936416248,1.85338483339425,0,0,-0.054385572482455,0.231338307998209,0,-0.0390109377342095,0.130893964993104,-0.0667773874189013,0.130893964993104,0,0,0.00474076915916114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306905436298626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130893964993104,0.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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=160.2915 | |rna_weight_ug=160.2915 | ||
|sample_age=4 | |sample_age=4 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1317 | |sample_cell_catalog=RCB1317 | ||
|sample_cell_line=KU-SN | |sample_cell_line=KU-SN | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.74351146810505e-282!GO:0043231;intracellular membrane-bound organelle;2.89143769440473e-238!GO:0043227;membrane-bound organelle;2.89143769440473e-238!GO:0043226;organelle;1.04254805732225e-237!GO:0043229;intracellular organelle;3.90861564563188e-237!GO:0005737;cytoplasm;1.1765011295876e-155!GO:0044422;organelle part;4.00796588121427e-143!GO:0044446;intracellular organelle part;2.00890403640195e-141!GO:0005634;nucleus;6.81655397616207e-131!GO:0044238;primary metabolic process;8.8809491608782e-110!GO:0043170;macromolecule metabolic process;6.9700260629955e-109!GO:0044237;cellular metabolic process;2.05156759056415e-108!GO:0044444;cytoplasmic part;2.80874946386106e-105!GO:0032991;macromolecular complex;3.23642729967215e-105!GO:0030529;ribonucleoprotein complex;4.6818703428887e-102!GO:0044428;nuclear part;5.99896055284557e-94!GO:0003723;RNA binding;2.25039173923578e-86!GO:0043233;organelle lumen;7.40100705221493e-84!GO:0031974;membrane-enclosed lumen;7.40100705221493e-84!GO:0010467;gene expression;3.08129765542452e-77!GO:0043283;biopolymer metabolic process;3.80489051807597e-77!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.75540092611297e-74!GO:0005515;protein binding;1.25184524819716e-68!GO:0006396;RNA processing;2.12653831615833e-65!GO:0003676;nucleic acid binding;2.429975705789e-59!GO:0031981;nuclear lumen;3.79100607342628e-57!GO:0005840;ribosome;6.29985990362066e-56!GO:0005739;mitochondrion;2.57343374615415e-55!GO:0016043;cellular component organization and biogenesis;6.60811269148021e-51!GO:0006412;translation;4.65175314056856e-50!GO:0016071;mRNA metabolic process;1.3204709331564e-49!GO:0043234;protein complex;3.84409890010848e-49!GO:0008380;RNA splicing;3.00835703064074e-48!GO:0016070;RNA metabolic process;4.97568728900548e-47!GO:0003735;structural constituent of ribosome;2.03447482971286e-46!GO:0033036;macromolecule localization;1.52264238117423e-44!GO:0019538;protein metabolic process;2.69129612176192e-43!GO:0006397;mRNA processing;3.31937178975559e-43!GO:0015031;protein transport;7.66415278276514e-43!GO:0033279;ribosomal subunit;1.24686766391506e-41!GO:0008104;protein localization;7.38963124527715e-40!GO:0045184;establishment of protein localization;1.97337007431027e-39!GO:0006996;organelle organization and biogenesis;3.04194337355388e-39!GO:0031090;organelle membrane;4.09131007415921e-39!GO:0044267;cellular protein metabolic process;4.31238872310399e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.62680446479778e-38!GO:0043228;non-membrane-bound organelle;2.38973065644331e-37!GO:0043232;intracellular non-membrane-bound organelle;2.38973065644331e-37!GO:0044260;cellular macromolecule metabolic process;2.67800934558392e-37!GO:0006259;DNA metabolic process;3.40894821095153e-37!GO:0044429;mitochondrial part;5.9075373611476e-37!GO:0065003;macromolecular complex assembly;1.83813912812641e-36!GO:0005681;spliceosome;2.04104098090972e-35!GO:0005829;cytosol;8.32404964137823e-35!GO:0031967;organelle envelope;1.76263987758531e-34!GO:0046907;intracellular transport;1.76263987758531e-34!GO:0031975;envelope;2.29962992856079e-34!GO:0005654;nucleoplasm;4.82771884317242e-34!GO:0044249;cellular biosynthetic process;4.27583662155411e-33!GO:0022607;cellular component assembly;1.79100193458429e-32!GO:0009059;macromolecule biosynthetic process;1.3473223582568e-31!GO:0009058;biosynthetic process;1.5320128242392e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.5160901829393e-29!GO:0006886;intracellular protein transport;5.80728472379191e-28!GO:0044451;nucleoplasm part;9.8930302637357e-28!GO:0005730;nucleolus;2.93332025437533e-26!GO:0007049;cell cycle;5.27680656380045e-25!GO:0000166;nucleotide binding;1.61980950294302e-24!GO:0044445;cytosolic part;3.1363154130177e-24!GO:0051649;establishment of cellular localization;2.16037265115452e-23!GO:0051641;cellular localization;1.13741896187698e-22!GO:0005740;mitochondrial envelope;7.31142818846953e-22!GO:0006512;ubiquitin cycle;1.13349705140246e-21!GO:0015934;large ribosomal subunit;1.72739973831022e-21!GO:0015935;small ribosomal subunit;3.31458099459413e-21!GO:0031966;mitochondrial membrane;3.61072903477072e-21!GO:0006457;protein folding;4.43115841338641e-21!GO:0019866;organelle inner membrane;4.6860924047782e-21!GO:0022618;protein-RNA complex assembly;7.02413503868098e-21!GO:0006119;oxidative phosphorylation;9.75750708744559e-21!GO:0051276;chromosome organization and biogenesis;1.95788148120962e-20!GO:0022402;cell cycle process;2.2028262106191e-20!GO:0008134;transcription factor binding;2.43356220565109e-19!GO:0005743;mitochondrial inner membrane;3.66760023526875e-19!GO:0016462;pyrophosphatase activity;5.89895225396261e-19!GO:0016874;ligase activity;6.47465573568008e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.47465573568008e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;6.59963197622418e-19!GO:0006974;response to DNA damage stimulus;1.0987856350994e-18!GO:0044455;mitochondrial membrane part;1.10109516100524e-18!GO:0008135;translation factor activity, nucleic acid binding;1.31113596610237e-18!GO:0031980;mitochondrial lumen;1.58590328589037e-18!GO:0005759;mitochondrial matrix;1.58590328589037e-18!GO:0017111;nucleoside-triphosphatase activity;3.22101446257915e-18!GO:0042254;ribosome biogenesis and assembly;1.61489433424497e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.00524957466938e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;7.09791567418222e-17!GO:0000375;RNA splicing, via transesterification reactions;7.09791567418222e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.09791567418222e-17!GO:0019941;modification-dependent protein catabolic process;9.58367623791368e-17!GO:0043632;modification-dependent macromolecule catabolic process;9.58367623791368e-17!GO:0044265;cellular macromolecule catabolic process;1.03839648250095e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.07823542996926e-16!GO:0006323;DNA packaging;1.24021002721626e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.08537277618434e-16!GO:0012505;endomembrane system;3.02626524399173e-16!GO:0006281;DNA repair;3.02626524399173e-16!GO:0044257;cellular protein catabolic process;3.26137305471042e-16!GO:0005694;chromosome;4.96357957955184e-16!GO:0032553;ribonucleotide binding;5.3711212181393e-16!GO:0032555;purine ribonucleotide binding;5.3711212181393e-16!GO:0005761;mitochondrial ribosome;5.75778446696536e-16!GO:0000313;organellar ribosome;5.75778446696536e-16!GO:0017076;purine nucleotide binding;6.68858944379514e-16!GO:0043285;biopolymer catabolic process;9.0953564950828e-16!GO:0051082;unfolded protein binding;2.16558198741395e-15!GO:0006605;protein targeting;3.30602222811171e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.12100949078209e-15!GO:0005746;mitochondrial respiratory chain;4.610126648265e-15!GO:0019222;regulation of metabolic process;5.12581567103813e-15!GO:0000278;mitotic cell cycle;1.46774084300814e-14!GO:0048770;pigment granule;1.58527047864939e-14!GO:0042470;melanosome;1.58527047864939e-14!GO:0016604;nuclear body;2.75972096722083e-14!GO:0006350;transcription;3.27237017555611e-14!GO:0050794;regulation of cellular process;3.35344426458682e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.24626190940519e-14!GO:0006913;nucleocytoplasmic transport;7.3689792848384e-14!GO:0005635;nuclear envelope;1.21127700531526e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.21127700531526e-13!GO:0003743;translation initiation factor activity;1.21127700531526e-13!GO:0009057;macromolecule catabolic process;1.5032496697757e-13!GO:0051169;nuclear transport;1.65859683524613e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.70482898204371e-13!GO:0003954;NADH dehydrogenase activity;1.70482898204371e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.70482898204371e-13!GO:0006260;DNA replication;1.76729894587929e-13!GO:0003712;transcription cofactor activity;1.95852337637697e-13!GO:0032559;adenyl ribonucleotide binding;2.07605340424027e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.60113357149001e-13!GO:0005524;ATP binding;2.70657303606038e-13!GO:0030163;protein catabolic process;2.75715854425096e-13!GO:0048193;Golgi vesicle transport;2.9103765123733e-13!GO:0030554;adenyl nucleotide binding;3.78841217142394e-13!GO:0043412;biopolymer modification;3.88653252199015e-13!GO:0044427;chromosomal part;4.78312095450204e-13!GO:0016607;nuclear speck;7.77480922898085e-13!GO:0031965;nuclear membrane;9.02640894352971e-13!GO:0016887;ATPase activity;1.06685814998872e-12!GO:0051726;regulation of cell cycle;1.17238724902083e-12!GO:0006399;tRNA metabolic process;1.87268439488403e-12!GO:0009719;response to endogenous stimulus;1.95459158929344e-12!GO:0031323;regulation of cellular metabolic process;2.11993777806185e-12!GO:0000087;M phase of mitotic cell cycle;2.29265776203752e-12!GO:0004386;helicase activity;3.08859097592157e-12!GO:0006413;translational initiation;3.11905141710097e-12!GO:0000074;regulation of progression through cell cycle;3.21881529484407e-12!GO:0007067;mitosis;3.49071383573362e-12!GO:0008026;ATP-dependent helicase activity;4.20726625362436e-12!GO:0042623;ATPase activity, coupled;5.010460520281e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.89792578743723e-12!GO:0042773;ATP synthesis coupled electron transport;5.89792578743723e-12!GO:0022403;cell cycle phase;7.19971733725761e-12!GO:0016072;rRNA metabolic process;8.31698715000989e-12!GO:0043687;post-translational protein modification;8.92021546892253e-12!GO:0006366;transcription from RNA polymerase II promoter;9.60318197628372e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.02638925885062e-11!GO:0045271;respiratory chain complex I;1.02638925885062e-11!GO:0005747;mitochondrial respiratory chain complex I;1.02638925885062e-11!GO:0044453;nuclear membrane part;1.37358259325632e-11!GO:0006364;rRNA processing;1.4843821627368e-11!GO:0051301;cell division;1.5105453923556e-11!GO:0032774;RNA biosynthetic process;1.58025866408e-11!GO:0006351;transcription, DNA-dependent;1.99481268573795e-11!GO:0006464;protein modification process;2.18181048504896e-11!GO:0006446;regulation of translational initiation;2.29151895136052e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.48452790423925e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.73514709806693e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.84060365622934e-11!GO:0016568;chromatin modification;3.50003373032333e-11!GO:0000279;M phase;4.51967971411979e-11!GO:0005783;endoplasmic reticulum;4.54837012812141e-11!GO:0050657;nucleic acid transport;5.99749380374221e-11!GO:0051236;establishment of RNA localization;5.99749380374221e-11!GO:0050658;RNA transport;5.99749380374221e-11!GO:0006403;RNA localization;7.15259920943866e-11!GO:0017038;protein import;7.30040193258506e-11!GO:0010468;regulation of gene expression;9.32314219753191e-11!GO:0005643;nuclear pore;9.70043678958523e-11!GO:0008565;protein transporter activity;1.27242568435904e-10!GO:0065004;protein-DNA complex assembly;1.37881045876414e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.88427393400445e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.88427393400445e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.88427393400445e-10!GO:0051186;cofactor metabolic process;2.32679943809042e-10!GO:0006333;chromatin assembly or disassembly;2.39545631341568e-10!GO:0005794;Golgi apparatus;3.36897111746909e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.72070274939604e-10!GO:0044432;endoplasmic reticulum part;5.99673027019277e-10!GO:0044248;cellular catabolic process;6.3283225309227e-10!GO:0003677;DNA binding;6.41936599627166e-10!GO:0043038;amino acid activation;6.57461072211893e-10!GO:0006418;tRNA aminoacylation for protein translation;6.57461072211893e-10!GO:0043039;tRNA aminoacylation;6.57461072211893e-10!GO:0045449;regulation of transcription;8.14003294292246e-10!GO:0015630;microtubule cytoskeleton;8.14003294292246e-10!GO:0006461;protein complex assembly;9.61255171235303e-10!GO:0043566;structure-specific DNA binding;1.2437615083236e-09!GO:0050789;regulation of biological process;1.45118783822334e-09!GO:0008639;small protein conjugating enzyme activity;1.58074603834805e-09!GO:0019787;small conjugating protein ligase activity;1.79658028696196e-09!GO:0004842;ubiquitin-protein ligase activity;1.86962846606923e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.01743670202189e-09!GO:0009259;ribonucleotide metabolic process;3.94623790471017e-09!GO:0000785;chromatin;4.29647976774179e-09!GO:0016192;vesicle-mediated transport;4.96379538572727e-09!GO:0006163;purine nucleotide metabolic process;5.27962661524897e-09!GO:0051028;mRNA transport;6.65865182418688e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.89262132960706e-09!GO:0006732;coenzyme metabolic process;7.08866650348094e-09!GO:0006164;purine nucleotide biosynthetic process;7.97190719840895e-09!GO:0009150;purine ribonucleotide metabolic process;9.173631191314e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.04300077395873e-08!GO:0006355;regulation of transcription, DNA-dependent;1.12774699812631e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16346837163615e-08!GO:0005768;endosome;1.22329900561537e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.28816429477097e-08!GO:0009260;ribonucleotide biosynthetic process;1.56957770775156e-08!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.19835108185837e-08!GO:0065002;intracellular protein transport across a membrane;2.33523679390924e-08!GO:0000245;spliceosome assembly;2.45259908637127e-08!GO:0009055;electron carrier activity;2.63847242302424e-08!GO:0046930;pore complex;2.68580416816494e-08!GO:0003713;transcription coactivator activity;3.31810491026471e-08!GO:0015986;ATP synthesis coupled proton transport;3.77539350124842e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.77539350124842e-08!GO:0016881;acid-amino acid ligase activity;4.09981087503345e-08!GO:0005667;transcription factor complex;4.41470332501393e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.55115221510502e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.55115221510502e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.60174034055218e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.4432826900652e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.4432826900652e-08!GO:0048523;negative regulation of cellular process;5.44932811900028e-08!GO:0006606;protein import into nucleus;6.17770119224842e-08!GO:0016564;transcription repressor activity;7.21038061055539e-08!GO:0006261;DNA-dependent DNA replication;1.00640289392312e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.02259906824428e-07!GO:0051170;nuclear import;1.02351413242932e-07!GO:0009141;nucleoside triphosphate metabolic process;1.10714285101508e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.24035094171055e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.24035094171055e-07!GO:0016779;nucleotidyltransferase activity;1.45614033835907e-07!GO:0031324;negative regulation of cellular metabolic process;1.53869266496767e-07!GO:0032446;protein modification by small protein conjugation;2.27026141702864e-07!GO:0005813;centrosome;2.29297505265785e-07!GO:0031497;chromatin assembly;2.67063562730529e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.0321621610411e-07!GO:0045786;negative regulation of progression through cell cycle;3.70081149034737e-07!GO:0006334;nucleosome assembly;3.84323844647723e-07!GO:0012501;programmed cell death;4.68717370173084e-07!GO:0006754;ATP biosynthetic process;4.69279028395567e-07!GO:0006753;nucleoside phosphate metabolic process;4.69279028395567e-07!GO:0003697;single-stranded DNA binding;4.8460064141233e-07!GO:0009892;negative regulation of metabolic process;5.02928712410414e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.57421040304431e-07!GO:0016567;protein ubiquitination;6.31788007195809e-07!GO:0044440;endosomal part;7.55541936611637e-07!GO:0010008;endosome membrane;7.55541936611637e-07!GO:0003724;RNA helicase activity;8.09917449040076e-07!GO:0005789;endoplasmic reticulum membrane;8.1144750440916e-07!GO:0019829;cation-transporting ATPase activity;8.8958111604984e-07!GO:0006915;apoptosis;9.81397946937769e-07!GO:0048519;negative regulation of biological process;1.02039841470412e-06!GO:0005815;microtubule organizing center;1.11179197620103e-06!GO:0005793;ER-Golgi intermediate compartment;1.17536865545548e-06!GO:0016481;negative regulation of transcription;1.17556645981377e-06!GO:0003899;DNA-directed RNA polymerase activity;1.20693644427636e-06!GO:0005819;spindle;1.25506098783346e-06!GO:0046034;ATP metabolic process;1.33299178868966e-06!GO:0008219;cell death;1.37766366595809e-06!GO:0016265;death;1.37766366595809e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.47338571575153e-06!GO:0051188;cofactor biosynthetic process;1.87298512962804e-06!GO:0048475;coated membrane;2.09168252914282e-06!GO:0030117;membrane coat;2.09168252914282e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.54287246914681e-06!GO:0009060;aerobic respiration;2.74588546186081e-06!GO:0016563;transcription activator activity;2.84477939359753e-06!GO:0000151;ubiquitin ligase complex;3.67000109003934e-06!GO:0000314;organellar small ribosomal subunit;4.14444031476749e-06!GO:0005763;mitochondrial small ribosomal subunit;4.14444031476749e-06!GO:0045259;proton-transporting ATP synthase complex;4.77735539929762e-06!GO:0016363;nuclear matrix;4.80212661846096e-06!GO:0007005;mitochondrion organization and biogenesis;4.98943886489619e-06!GO:0006793;phosphorus metabolic process;5.79155453050269e-06!GO:0006796;phosphate metabolic process;5.79155453050269e-06!GO:0045333;cellular respiration;5.93834885445097e-06!GO:0009108;coenzyme biosynthetic process;6.54055980103175e-06!GO:0006916;anti-apoptosis;6.54085850402773e-06!GO:0051168;nuclear export;7.76221401930999e-06!GO:0005770;late endosome;7.80651862814261e-06!GO:0051427;hormone receptor binding;8.79456548126099e-06!GO:0030120;vesicle coat;1.05926350825345e-05!GO:0030662;coated vesicle membrane;1.05926350825345e-05!GO:0005762;mitochondrial large ribosomal subunit;1.24888938920952e-05!GO:0000315;organellar large ribosomal subunit;1.24888938920952e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.34370577369614e-05!GO:0006752;group transfer coenzyme metabolic process;1.59303367801607e-05!GO:0044452;nucleolar part;1.60137129739692e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.74769039427685e-05!GO:0003714;transcription corepressor activity;1.79315349412672e-05!GO:0035257;nuclear hormone receptor binding;1.92229312801775e-05!GO:0006099;tricarboxylic acid cycle;1.99022613395535e-05!GO:0046356;acetyl-CoA catabolic process;1.99022613395535e-05!GO:0043623;cellular protein complex assembly;2.03688158650991e-05!GO:0009056;catabolic process;2.12911468939768e-05!GO:0008186;RNA-dependent ATPase activity;2.3170245410006e-05!GO:0006613;cotranslational protein targeting to membrane;2.5348679386667e-05!GO:0016310;phosphorylation;2.67603593082085e-05!GO:0003690;double-stranded DNA binding;3.05306552251642e-05!GO:0015631;tubulin binding;3.11155731614243e-05!GO:0043021;ribonucleoprotein binding;3.26574278699062e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.33179240888296e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.76072948634048e-05!GO:0003702;RNA polymerase II transcription factor activity;3.8561948715948e-05!GO:0043069;negative regulation of programmed cell death;4.20932679359816e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.79336760734861e-05!GO:0051246;regulation of protein metabolic process;4.80915765573713e-05!GO:0044431;Golgi apparatus part;5.13160341922904e-05!GO:0005769;early endosome;5.65833198884419e-05!GO:0008654;phospholipid biosynthetic process;5.75422325400596e-05!GO:0006084;acetyl-CoA metabolic process;5.92413799815532e-05!GO:0005788;endoplasmic reticulum lumen;6.30408945623063e-05!GO:0007051;spindle organization and biogenesis;6.74138445533997e-05!GO:0016853;isomerase activity;6.98150833724735e-05!GO:0004004;ATP-dependent RNA helicase activity;6.99077282636065e-05!GO:0004298;threonine endopeptidase activity;7.76356128243646e-05!GO:0043066;negative regulation of apoptosis;7.83453290818375e-05!GO:0016740;transferase activity;7.89780054265406e-05!GO:0051789;response to protein stimulus;9.94419910628835e-05!GO:0006986;response to unfolded protein;9.94419910628835e-05!GO:0031988;membrane-bound vesicle;0.000101260844907709!GO:0003924;GTPase activity;0.000126350398396298!GO:0019899;enzyme binding;0.000133436251416475!GO:0009109;coenzyme catabolic process;0.000140101631961467!GO:0003729;mRNA binding;0.000140154000700099!GO:0031072;heat shock protein binding;0.000140689636094711!GO:0065007;biological regulation;0.000144702174258195!GO:0006402;mRNA catabolic process;0.000145910954372458!GO:0043067;regulation of programmed cell death;0.000150534788446709!GO:0006383;transcription from RNA polymerase III promoter;0.000158028510118206!GO:0005525;GTP binding;0.000162956846358367!GO:0031982;vesicle;0.000164030289346643!GO:0042981;regulation of apoptosis;0.000167885521536687!GO:0006401;RNA catabolic process;0.000170818455836413!GO:0006891;intra-Golgi vesicle-mediated transport;0.000173289298976357!GO:0016023;cytoplasmic membrane-bound vesicle;0.000183570593458487!GO:0006414;translational elongation;0.000196991156681085!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000197248113467427!GO:0051187;cofactor catabolic process;0.000202443211647262!GO:0008033;tRNA processing;0.000212813233832195!GO:0008270;zinc ion binding;0.000225543202251325!GO:0005874;microtubule;0.00023079160352414!GO:0005798;Golgi-associated vesicle;0.00023079160352414!GO:0031410;cytoplasmic vesicle;0.00031182260391359!GO:0006352;transcription initiation;0.000317798166735468!GO:0003682;chromatin binding;0.000333522142140672!GO:0009117;nucleotide metabolic process;0.000333808408796393!GO:0007017;microtubule-based process;0.000345518347247147!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000393743050631376!GO:0005048;signal sequence binding;0.000397185436076764!GO:0006612;protein targeting to membrane;0.000433958636019073!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000440447408694615!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000462338329544453!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000510754928924167!GO:0048471;perinuclear region of cytoplasm;0.000565285733326282!GO:0003746;translation elongation factor activity;0.000604267939752086!GO:0000139;Golgi membrane;0.000617878075087927!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000628302890070151!GO:0051540;metal cluster binding;0.000642167899244619!GO:0051536;iron-sulfur cluster binding;0.000642167899244619!GO:0016859;cis-trans isomerase activity;0.000658765590695121!GO:0051087;chaperone binding;0.000660491247893886!GO:0000075;cell cycle checkpoint;0.000702218942139462!GO:0000786;nucleosome;0.000713949085978965!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000713949085978965!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000766338836897802!GO:0005684;U2-dependent spliceosome;0.000773067219909734!GO:0004527;exonuclease activity;0.000801400057988972!GO:0045454;cell redox homeostasis;0.000834243418091116!GO:0006839;mitochondrial transport;0.000906569808926436!GO:0032561;guanyl ribonucleotide binding;0.000921930279134255!GO:0019001;guanyl nucleotide binding;0.000921930279134255!GO:0006405;RNA export from nucleus;0.000921930279134255!GO:0045892;negative regulation of transcription, DNA-dependent;0.0009469512042141!GO:0030867;rough endoplasmic reticulum membrane;0.000947402641643601!GO:0008017;microtubule binding;0.00099719367809088!GO:0007088;regulation of mitosis;0.0010268527522049!GO:0051052;regulation of DNA metabolic process;0.00103181480722589!GO:0006338;chromatin remodeling;0.00111467985953869!GO:0000049;tRNA binding;0.00123424134713071!GO:0005657;replication fork;0.00123424134713071!GO:0007010;cytoskeleton organization and biogenesis;0.00125629844778425!GO:0048487;beta-tubulin binding;0.00129285158099206!GO:0006310;DNA recombination;0.00142205606533368!GO:0051920;peroxiredoxin activity;0.00152353555805236!GO:0000059;protein import into nucleus, docking;0.00153329570247688!GO:0007052;mitotic spindle organization and biogenesis;0.00154494477806681!GO:0051329;interphase of mitotic cell cycle;0.00155047849746794!GO:0016741;transferase activity, transferring one-carbon groups;0.00155221666402695!GO:0003711;transcription elongation regulator activity;0.00168822977843654!GO:0046914;transition metal ion binding;0.00169085819644292!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0017195829876831!GO:0006302;double-strand break repair;0.00180534320507221!GO:0008168;methyltransferase activity;0.00183719900833189!GO:0032200;telomere organization and biogenesis;0.00197081081607513!GO:0000723;telomere maintenance;0.00197081081607513!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00201430793312429!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00201430793312429!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00201430793312429!GO:0003678;DNA helicase activity;0.00203859705213294!GO:0043681;protein import into mitochondrion;0.00205690779760757!GO:0019843;rRNA binding;0.0022234604473697!GO:0008250;oligosaccharyl transferase complex;0.00229922967059331!GO:0003684;damaged DNA binding;0.00236751405685387!GO:0016126;sterol biosynthetic process;0.00250266544249726!GO:0008094;DNA-dependent ATPase activity;0.00255710255708424!GO:0046474;glycerophospholipid biosynthetic process;0.0027586268612786!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00290383598762233!GO:0016251;general RNA polymerase II transcription factor activity;0.00293617148135633!GO:0007004;telomere maintenance via telomerase;0.00296221890309755!GO:0007006;mitochondrial membrane organization and biogenesis;0.00312959510361633!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00315309079935021!GO:0004674;protein serine/threonine kinase activity;0.00320794073115233!GO:0030880;RNA polymerase complex;0.00327774645278974!GO:0042802;identical protein binding;0.00336048788911593!GO:0007093;mitotic cell cycle checkpoint;0.00337397792338109!GO:0008022;protein C-terminus binding;0.00337890408800476!GO:0016272;prefoldin complex;0.00341811329884471!GO:0048500;signal recognition particle;0.00342449445978717!GO:0006818;hydrogen transport;0.00359535244542509!GO:0015992;proton transport;0.00369326177877288!GO:0005876;spindle microtubule;0.00396039456363441!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00401786044672195!GO:0004576;oligosaccharyl transferase activity;0.00403433720297105!GO:0008139;nuclear localization sequence binding;0.00404819932443002!GO:0031968;organelle outer membrane;0.00410113658910137!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00410381071456873!GO:0030663;COPI coated vesicle membrane;0.00413958502989886!GO:0030126;COPI vesicle coat;0.00413958502989886!GO:0046467;membrane lipid biosynthetic process;0.00433982672878484!GO:0032508;DNA duplex unwinding;0.00433982672878484!GO:0032392;DNA geometric change;0.00433982672878484!GO:0031252;leading edge;0.00438059000259824!GO:0006376;mRNA splice site selection;0.00450760212946618!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00450760212946618!GO:0051252;regulation of RNA metabolic process;0.00458714706452491!GO:0004518;nuclease activity;0.00465458998561525!GO:0005669;transcription factor TFIID complex;0.00468320344850782!GO:0030134;ER to Golgi transport vesicle;0.00469151162835016!GO:0030137;COPI-coated vesicle;0.00485744180866202!GO:0033116;ER-Golgi intermediate compartment membrane;0.00486052967079212!GO:0005741;mitochondrial outer membrane;0.00493006799518087!GO:0006289;nucleotide-excision repair;0.00495573418943947!GO:0008180;signalosome;0.00506114018232823!GO:0019867;outer membrane;0.00512095647841572!GO:0031902;late endosome membrane;0.00514508661766402!GO:0016584;nucleosome positioning;0.00528443045590552!GO:0006595;polyamine metabolic process;0.00536597448110402!GO:0016787;hydrolase activity;0.00552702924723078!GO:0048245;eosinophil chemotaxis;0.00572602190319912!GO:0000775;chromosome, pericentric region;0.00587132121889482!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00605373015224575!GO:0045045;secretory pathway;0.00608572320952471!GO:0000922;spindle pole;0.0066635037617952!GO:0051325;interphase;0.00672190984754569!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00674421282043581!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00674421282043581!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00681853335410997!GO:0000428;DNA-directed RNA polymerase complex;0.00681853335410997!GO:0000781;chromosome, telomeric region;0.00692642004650294!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00702582009223574!GO:0043022;ribosome binding;0.00703151348813493!GO:0051539;4 iron, 4 sulfur cluster binding;0.00712765800599258!GO:0000776;kinetochore;0.00718492383711668!GO:0030127;COPII vesicle coat;0.00719930375376572!GO:0012507;ER to Golgi transport vesicle membrane;0.00719930375376572!GO:0007021;tubulin folding;0.00733798268504518!GO:0005885;Arp2/3 protein complex;0.00759574217120371!GO:0051098;regulation of binding;0.00799470052616553!GO:0008312;7S RNA binding;0.00811080275086812!GO:0031901;early endosome membrane;0.00812528351306812!GO:0006611;protein export from nucleus;0.00818451661882447!GO:0030133;transport vesicle;0.00820113595240794!GO:0006278;RNA-dependent DNA replication;0.00833709941110221!GO:0006626;protein targeting to mitochondrion;0.00864300804572629!GO:0006354;RNA elongation;0.00871546547836152!GO:0019783;small conjugating protein-specific protease activity;0.00875377039351125!GO:0004843;ubiquitin-specific protease activity;0.00909577160375768!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00921745938101726!GO:0035258;steroid hormone receptor binding;0.00936622580532947!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00965562895663337!GO:0005832;chaperonin-containing T-complex;0.0102937033434138!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.010429111947532!GO:0003725;double-stranded RNA binding;0.0105678589897893!GO:0006650;glycerophospholipid metabolic process;0.0109180441927258!GO:0030118;clathrin coat;0.0109729502795192!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0109976610907398!GO:0045047;protein targeting to ER;0.0109976610907398!GO:0030521;androgen receptor signaling pathway;0.0110167456698113!GO:0000178;exosome (RNase complex);0.0111613357893924!GO:0003756;protein disulfide isomerase activity;0.011178803266632!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.011178803266632!GO:0046966;thyroid hormone receptor binding;0.0114040066367602!GO:0006695;cholesterol biosynthetic process;0.0115755741562687!GO:0031124;mRNA 3'-end processing;0.0122679413157978!GO:0008276;protein methyltransferase activity;0.0122679413157978!GO:0007050;cell cycle arrest;0.0123767436490428!GO:0009165;nucleotide biosynthetic process;0.0126019784790254!GO:0006607;NLS-bearing substrate import into nucleus;0.0129054967038993!GO:0004221;ubiquitin thiolesterase activity;0.0131105479315208!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0132011733935385!GO:0046489;phosphoinositide biosynthetic process;0.0135434919293449!GO:0006275;regulation of DNA replication;0.0137855109343348!GO:0006284;base-excision repair;0.014047733753806!GO:0006268;DNA unwinding during replication;0.0145795447479609!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0146230144626736!GO:0015399;primary active transmembrane transporter activity;0.0146230144626736!GO:0032984;macromolecular complex disassembly;0.0150200437988258!GO:0005637;nuclear inner membrane;0.0150200437988258!GO:0006892;post-Golgi vesicle-mediated transport;0.0150200437988258!GO:0005791;rough endoplasmic reticulum;0.01524515513893!GO:0007059;chromosome segregation;0.0153772672263508!GO:0016790;thiolester hydrolase activity;0.0154712653656417!GO:0043488;regulation of mRNA stability;0.0155259105854146!GO:0043487;regulation of RNA stability;0.0155259105854146!GO:0016407;acetyltransferase activity;0.0157677123818403!GO:0016491;oxidoreductase activity;0.0161226301509572!GO:0043624;cellular protein complex disassembly;0.0161367588723501!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0161405810061423!GO:0031625;ubiquitin protein ligase binding;0.0163512599133744!GO:0005869;dynactin complex;0.0164578017077337!GO:0051101;regulation of DNA binding;0.0172293820950759!GO:0000339;RNA cap binding;0.0175405661300864!GO:0015980;energy derivation by oxidation of organic compounds;0.0188778841470557!GO:0000082;G1/S transition of mitotic cell cycle;0.0199829173741108!GO:0009303;rRNA transcription;0.0199829173741108!GO:0051287;NAD binding;0.0202856085075414!GO:0008408;3'-5' exonuclease activity;0.0204777753756743!GO:0007034;vacuolar transport;0.0204777753756743!GO:0006091;generation of precursor metabolites and energy;0.0205676406288938!GO:0018196;peptidyl-asparagine modification;0.0206577795065327!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0206577795065327!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0209744004182194!GO:0005689;U12-dependent spliceosome;0.0209915255454291!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0209915255454291!GO:0015002;heme-copper terminal oxidase activity;0.0209915255454291!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0209915255454291!GO:0004129;cytochrome-c oxidase activity;0.0209915255454291!GO:0030384;phosphoinositide metabolic process;0.0210796911911266!GO:0005905;coated pit;0.0211178500319126!GO:0030658;transport vesicle membrane;0.0211178500319126!GO:0016197;endosome transport;0.0213474116044207!GO:0051452;cellular pH reduction;0.0213474116044207!GO:0051453;regulation of cellular pH;0.0213474116044207!GO:0045851;pH reduction;0.0213474116044207!GO:0046822;regulation of nucleocytoplasmic transport;0.0216404496103163!GO:0017166;vinculin binding;0.021801818825593!GO:0008601;protein phosphatase type 2A regulator activity;0.0219667237350695!GO:0005521;lamin binding;0.0226472561783267!GO:0005844;polysome;0.0226472561783267!GO:0005773;vacuole;0.0228887268127457!GO:0030518;steroid hormone receptor signaling pathway;0.023111051036064!GO:0050811;GABA receptor binding;0.0231262123430108!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.023329467002373!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0240818418635493!GO:0008097;5S rRNA binding;0.0241533853311305!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0248484058692318!GO:0004532;exoribonuclease activity;0.0252204937792016!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0252204937792016!GO:0003727;single-stranded RNA binding;0.0253483953500371!GO:0006406;mRNA export from nucleus;0.0254119009018162!GO:0030641;cellular hydrogen ion homeostasis;0.025479282309446!GO:0000910;cytokinesis;0.0254803429944494!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0254904936587539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0257066445413194!GO:0033673;negative regulation of kinase activity;0.0263643396973414!GO:0006469;negative regulation of protein kinase activity;0.0263643396973414!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0263989227740191!GO:0006984;ER-nuclear signaling pathway;0.0265400371589367!GO:0030508;thiol-disulfide exchange intermediate activity;0.0265841111749681!GO:0065009;regulation of a molecular function;0.0266028360538926!GO:0000228;nuclear chromosome;0.0267960436075197!GO:0030036;actin cytoskeleton organization and biogenesis;0.0270623042931525!GO:0043241;protein complex disassembly;0.0277467048517335!GO:0030041;actin filament polymerization;0.0278342613664323!GO:0000152;nuclear ubiquitin ligase complex;0.0285505090789646!GO:0008287;protein serine/threonine phosphatase complex;0.0286676733614967!GO:0051128;regulation of cellular component organization and biogenesis;0.0288743884740832!GO:0019887;protein kinase regulator activity;0.0293277201182087!GO:0006378;mRNA polyadenylation;0.029346032473912!GO:0005732;small nucleolar ribonucleoprotein complex;0.0301527352260521!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0301527352260521!GO:0000123;histone acetyltransferase complex;0.0303732936407675!GO:0000118;histone deacetylase complex;0.0304764328257416!GO:0043284;biopolymer biosynthetic process;0.03065021492111!GO:0030027;lamellipodium;0.0311921097914229!GO:0043047;single-stranded telomeric DNA binding;0.0319118626848074!GO:0032039;integrator complex;0.032043984457776!GO:0001667;ameboidal cell migration;0.0323767846163046!GO:0032027;myosin light chain binding;0.0323767846163046!GO:0044450;microtubule organizing center part;0.0338293136243985!GO:0008320;protein transmembrane transporter activity;0.033905538502351!GO:0045792;negative regulation of cell size;0.033905538502351!GO:0005680;anaphase-promoting complex;0.0339275518575424!GO:0030119;AP-type membrane coat adaptor complex;0.0347427356837658!GO:0019207;kinase regulator activity;0.0351318570702905!GO:0045893;positive regulation of transcription, DNA-dependent;0.0353592969145108!GO:0051348;negative regulation of transferase activity;0.0359408661995116!GO:0031123;RNA 3'-end processing;0.0368950580381925!GO:0045941;positive regulation of transcription;0.0370186474486348!GO:0030175;filopodium;0.0372327785633292!GO:0046982;protein heterodimerization activity;0.037371579254259!GO:0008154;actin polymerization and/or depolymerization;0.0374799591907185!GO:0030660;Golgi-associated vesicle membrane;0.0381162222159727!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0381162222159727!GO:0050662;coenzyme binding;0.0384352896731169!GO:0032507;maintenance of cellular protein localization;0.0385370544522737!GO:0030176;integral to endoplasmic reticulum membrane;0.0387611676745362!GO:0000726;non-recombinational repair;0.0392380006879461!GO:0004003;ATP-dependent DNA helicase activity;0.0393210671319216!GO:0030131;clathrin adaptor complex;0.0396434253945051!GO:0009116;nucleoside metabolic process;0.0407093927878047!GO:0043087;regulation of GTPase activity;0.040805458407696!GO:0017134;fibroblast growth factor binding;0.0422861043915308!GO:0005784;translocon complex;0.0430868268089393!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0439408096817768!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0442340170611949!GO:0010257;NADH dehydrogenase complex assembly;0.0442340170611949!GO:0033108;mitochondrial respiratory chain complex assembly;0.0442340170611949!GO:0006360;transcription from RNA polymerase I promoter;0.0445058250409648!GO:0004333;fumarate hydratase activity;0.0445058250409648!GO:0048873;homeostasis of number of cells within a tissue;0.0445058250409648!GO:0006106;fumarate metabolic process;0.0445058250409648!GO:0009112;nucleobase metabolic process;0.0464676017694657!GO:0030308;negative regulation of cell growth;0.0467835463521023!GO:0016311;dephosphorylation;0.0478383337499117!GO:0019206;nucleoside kinase activity;0.0480361419754006!GO:0043189;H4/H2A histone acetyltransferase complex;0.0485256561439856!GO:0004680;casein kinase activity;0.0485490679194114!GO:0032259;methylation;0.048703953011762!GO:0043414;biopolymer methylation;0.048703953011762!GO:0042393;histone binding;0.048703953011762!GO:0031577;spindle checkpoint;0.0491451576530953!GO:0006596;polyamine biosynthetic process;0.0491870066343614 | |||
|sample_id=10697 | |sample_id=10697 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=peripheral nervous system | |sample_tissue=peripheral nervous system | ||
|top_motifs=AIRE:2.55264257372;PAX4:2.42047336165;HBP1_HMGB_SSRP1_UBTF:2.08207994179;NKX6-1,2:1.9631140506;AHR_ARNT_ARNT2:1.88486566326;PBX1:1.74303341226;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.65871772878;bHLH_family:1.54819720833;ATF5_CREB3:1.51309287282;TOPORS:1.47761849589;CDX1,2,4:1.47621750996;IKZF2:1.438999443;ALX1:1.42059808788;ZBTB16:1.32757106039;FOXM1:1.25839622621;GFI1:1.2017579901;ATF4:1.17831259578;FOXP1:1.1492524797;RFX1:1.07682523014;CUX2:1.04661774514;PRRX1,2:1.04158269327;DBP:1.0262788801;PDX1:1.01898433601;POU1F1:0.980593005097;EN1,2:0.965947039225;CDC5L:0.940294525649;PITX1..3:0.935395623725;EVI1:0.930958098705;OCT4_SOX2{dimer}:0.891531053865;T:0.881646398663;ZNF143:0.869376667927;PRDM1:0.863371067974;HOX{A4,D4}:0.838397469724;RFX2..5_RFXANK_RFXAP:0.818218652309;YY1:0.817132263951;ELK1,4_GABP{A,B1}:0.802926521697;ATF6:0.782550231278;JUN:0.75656248051;NRF1:0.720731502896;ZNF384:0.692013804165;ARID5B:0.672255750835;POU3F1..4:0.652629730231;MTF1:0.615497259301;CREB1:0.601785972274;REST:0.575166572426;PAX8:0.527111146101;FOXD3:0.523820346536;BREu{core}:0.493237616422;HAND1,2:0.478737560668;POU2F1..3:0.477513109842;UFEwm:0.465210840175;PAX1,9:0.43912607356;PATZ1:0.41166703625;NFY{A,B,C}:0.384109855503;GFI1B:0.3833561689;ZFP161:0.35273975775;RREB1:0.310911552898;MEF2{A,B,C,D}:0.309787595529;HES1:0.301150177403;TEF:0.297051016724;SOX{8,9,10}:0.291301086759;ALX4:0.285853098386;PAX3,7:0.279467661003;MYB:0.265137397135;MZF1:0.22579042809;GATA4:0.220151059457;NFIL3:0.189387004191;KLF4:0.185281989132;EGR1..3:0.176448685246;ONECUT1,2:0.172652025165;TLX2:0.157416057697;NFIX:0.157321303606;POU5F1:0.115892656832;NR3C1:0.108339999241;ADNP_IRX_SIX_ZHX:0.0927097881856;FOXN1:0.0836672738162;SREBF1,2:0.0481977146698;GTF2I:0.025971231736;LHX3,4:0.0239497937392;LEF1_TCF7_TCF7L1,2:0.0175593480024;E2F1..5:0.0145179480098;ATF2:0.00878314249596;TP53:-0.0088025803071;SOX17:-0.00903589827384;MED-1{core}:-0.0158841571311;NFE2L1:-0.0206852595135;ZIC1..3:-0.024293339871;SNAI1..3:-0.0245261657899;GTF2A1,2:-0.032133028795;LMO2:-0.0334856933867;TLX1..3_NFIC{dimer}:-0.0346078488007;ZNF423:-0.0423104999039;FOX{I1,J2}:-0.0471815860917;FOX{D1,D2}:-0.0486670232623;CRX:-0.0575372858004;FOXQ1:-0.0694693772106;BPTF:-0.0882641529022;NANOG:-0.0999678788356;VSX1,2:-0.101349258103;FOXO1,3,4:-0.105277537242;DMAP1_NCOR{1,2}_SMARC:-0.129337355615;MYFfamily:-0.130727506068;PAX2:-0.133722937002;HMX1:-0.163418814117;NKX3-1:-0.16395158657;TBP:-0.164460606964;NANOG{mouse}:-0.180980224107;HOX{A5,B5}:-0.190107922688;HOX{A6,A7,B6,B7}:-0.197556076537;SOX2:-0.216057152817;PAX6:-0.224360768143;HMGA1,2:-0.236923423926;TFDP1:-0.240658076532;NFATC1..3:-0.240688773507;SPIB:-0.246156709791;NR6A1:-0.288215714579;STAT5{A,B}:-0.294514337416;HNF1A:-0.301718833262;SOX5:-0.303791100722;TEAD1:-0.303924535415;GATA6:-0.309027213269;NKX2-3_NKX2-5:-0.312106962543;HNF4A_NR2F1,2:-0.319932895267;RXR{A,B,G}:-0.361395838633;FOS_FOS{B,L1}_JUN{B,D}:-0.363858872987;POU6F1:-0.364882994728;FOXP3:-0.368848651582;MYBL2:-0.368978889801;RORA:-0.372028629319;NFKB1_REL_RELA:-0.373487607556;SPI1:-0.403723205611;RBPJ:-0.405292551992;STAT1,3:-0.41073186862;CEBPA,B_DDIT3:-0.418999155184;NFE2L2:-0.438225459511;ZEB1:-0.459009723832;FOX{F1,F2,J1}:-0.461585445001;ZBTB6:-0.482202338906;FOXA2:-0.492769732649;ELF1,2,4:-0.529048174528;GLI1..3:-0.534256923792;HOXA9_MEIS1:-0.546659150011;MTE{core}:-0.560963372842;TFAP2B:-0.577654155332;RUNX1..3:-0.596455559435;SMAD1..7,9:-0.599828232799;NR5A1,2:-0.603608563187;NR1H4:-0.607259412616;FOSL2:-0.620206818698;SRF:-0.659508309667;HSF1,2:-0.664264185421;HLF:-0.665409201121;STAT2,4,6:-0.672749492288;BACH2:-0.69028608051;NKX2-1,4:-0.697124741459;FOXL1:-0.702905132322;GZF1:-0.710586427059;ETS1,2:-0.757891877168;NFE2:-0.772778780212;TAL1_TCF{3,4,12}:-0.808531337064;PAX5:-0.810394120208;NHLH1,2:-0.863823376677;ZNF238:-0.884326004182;MYOD1:-0.888168381299;MAZ:-0.92525350361;AR:-0.940107223681;IRF1,2:-0.975021964653;NKX2-2,8:-0.992291242161;IRF7:-1.0004315178;TFAP2{A,C}:-1.02096192759;HIF1A:-1.0249690768;HIC1:-1.06541799816;MAFB:-1.07333981624;XBP1:-1.12699417263;TGIF1:-1.14182646279;IKZF1:-1.17344595017;EBF1:-1.18898549457;EP300:-1.20067872021;NKX3-2:-1.20342327783;TBX4,5:-1.24855842914;ESRRA:-1.26503917542;RXRA_VDR{dimer}:-1.27415416443;SPZ1:-1.35406972286;SP1:-1.44648130568;ZNF148:-1.50452196308;GCM1,2:-1.54872817977;TFAP4:-1.63055208996;ESR1:-1.70016582324;TFCP2:-1.7474495171;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.84068082457;XCPE1{core}:-2.10208341033;PPARG:-2.30305740182 | |top_motifs=AIRE:2.55264257372;PAX4:2.42047336165;HBP1_HMGB_SSRP1_UBTF:2.08207994179;NKX6-1,2:1.9631140506;AHR_ARNT_ARNT2:1.88486566326;PBX1:1.74303341226;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.65871772878;bHLH_family:1.54819720833;ATF5_CREB3:1.51309287282;TOPORS:1.47761849589;CDX1,2,4:1.47621750996;IKZF2:1.438999443;ALX1:1.42059808788;ZBTB16:1.32757106039;FOXM1:1.25839622621;GFI1:1.2017579901;ATF4:1.17831259578;FOXP1:1.1492524797;RFX1:1.07682523014;CUX2:1.04661774514;PRRX1,2:1.04158269327;DBP:1.0262788801;PDX1:1.01898433601;POU1F1:0.980593005097;EN1,2:0.965947039225;CDC5L:0.940294525649;PITX1..3:0.935395623725;EVI1:0.930958098705;OCT4_SOX2{dimer}:0.891531053865;T:0.881646398663;ZNF143:0.869376667927;PRDM1:0.863371067974;HOX{A4,D4}:0.838397469724;RFX2..5_RFXANK_RFXAP:0.818218652309;YY1:0.817132263951;ELK1,4_GABP{A,B1}:0.802926521697;ATF6:0.782550231278;JUN:0.75656248051;NRF1:0.720731502896;ZNF384:0.692013804165;ARID5B:0.672255750835;POU3F1..4:0.652629730231;MTF1:0.615497259301;CREB1:0.601785972274;REST:0.575166572426;PAX8:0.527111146101;FOXD3:0.523820346536;BREu{core}:0.493237616422;HAND1,2:0.478737560668;POU2F1..3:0.477513109842;UFEwm:0.465210840175;PAX1,9:0.43912607356;PATZ1:0.41166703625;NFY{A,B,C}:0.384109855503;GFI1B:0.3833561689;ZFP161:0.35273975775;RREB1:0.310911552898;MEF2{A,B,C,D}:0.309787595529;HES1:0.301150177403;TEF:0.297051016724;SOX{8,9,10}:0.291301086759;ALX4:0.285853098386;PAX3,7:0.279467661003;MYB:0.265137397135;MZF1:0.22579042809;GATA4:0.220151059457;NFIL3:0.189387004191;KLF4:0.185281989132;EGR1..3:0.176448685246;ONECUT1,2:0.172652025165;TLX2:0.157416057697;NFIX:0.157321303606;POU5F1:0.115892656832;NR3C1:0.108339999241;ADNP_IRX_SIX_ZHX:0.0927097881856;FOXN1:0.0836672738162;SREBF1,2:0.0481977146698;GTF2I:0.025971231736;LHX3,4:0.0239497937392;LEF1_TCF7_TCF7L1,2:0.0175593480024;E2F1..5:0.0145179480098;ATF2:0.00878314249596;TP53:-0.0088025803071;SOX17:-0.00903589827384;MED-1{core}:-0.0158841571311;NFE2L1:-0.0206852595135;ZIC1..3:-0.024293339871;SNAI1..3:-0.0245261657899;GTF2A1,2:-0.032133028795;LMO2:-0.0334856933867;TLX1..3_NFIC{dimer}:-0.0346078488007;ZNF423:-0.0423104999039;FOX{I1,J2}:-0.0471815860917;FOX{D1,D2}:-0.0486670232623;CRX:-0.0575372858004;FOXQ1:-0.0694693772106;BPTF:-0.0882641529022;NANOG:-0.0999678788356;VSX1,2:-0.101349258103;FOXO1,3,4:-0.105277537242;DMAP1_NCOR{1,2}_SMARC:-0.129337355615;MYFfamily:-0.130727506068;PAX2:-0.133722937002;HMX1:-0.163418814117;NKX3-1:-0.16395158657;TBP:-0.164460606964;NANOG{mouse}:-0.180980224107;HOX{A5,B5}:-0.190107922688;HOX{A6,A7,B6,B7}:-0.197556076537;SOX2:-0.216057152817;PAX6:-0.224360768143;HMGA1,2:-0.236923423926;TFDP1:-0.240658076532;NFATC1..3:-0.240688773507;SPIB:-0.246156709791;NR6A1:-0.288215714579;STAT5{A,B}:-0.294514337416;HNF1A:-0.301718833262;SOX5:-0.303791100722;TEAD1:-0.303924535415;GATA6:-0.309027213269;NKX2-3_NKX2-5:-0.312106962543;HNF4A_NR2F1,2:-0.319932895267;RXR{A,B,G}:-0.361395838633;FOS_FOS{B,L1}_JUN{B,D}:-0.363858872987;POU6F1:-0.364882994728;FOXP3:-0.368848651582;MYBL2:-0.368978889801;RORA:-0.372028629319;NFKB1_REL_RELA:-0.373487607556;SPI1:-0.403723205611;RBPJ:-0.405292551992;STAT1,3:-0.41073186862;CEBPA,B_DDIT3:-0.418999155184;NFE2L2:-0.438225459511;ZEB1:-0.459009723832;FOX{F1,F2,J1}:-0.461585445001;ZBTB6:-0.482202338906;FOXA2:-0.492769732649;ELF1,2,4:-0.529048174528;GLI1..3:-0.534256923792;HOXA9_MEIS1:-0.546659150011;MTE{core}:-0.560963372842;TFAP2B:-0.577654155332;RUNX1..3:-0.596455559435;SMAD1..7,9:-0.599828232799;NR5A1,2:-0.603608563187;NR1H4:-0.607259412616;FOSL2:-0.620206818698;SRF:-0.659508309667;HSF1,2:-0.664264185421;HLF:-0.665409201121;STAT2,4,6:-0.672749492288;BACH2:-0.69028608051;NKX2-1,4:-0.697124741459;FOXL1:-0.702905132322;GZF1:-0.710586427059;ETS1,2:-0.757891877168;NFE2:-0.772778780212;TAL1_TCF{3,4,12}:-0.808531337064;PAX5:-0.810394120208;NHLH1,2:-0.863823376677;ZNF238:-0.884326004182;MYOD1:-0.888168381299;MAZ:-0.92525350361;AR:-0.940107223681;IRF1,2:-0.975021964653;NKX2-2,8:-0.992291242161;IRF7:-1.0004315178;TFAP2{A,C}:-1.02096192759;HIF1A:-1.0249690768;HIC1:-1.06541799816;MAFB:-1.07333981624;XBP1:-1.12699417263;TGIF1:-1.14182646279;IKZF1:-1.17344595017;EBF1:-1.18898549457;EP300:-1.20067872021;NKX3-2:-1.20342327783;TBX4,5:-1.24855842914;ESRRA:-1.26503917542;RXRA_VDR{dimer}:-1.27415416443;SPZ1:-1.35406972286;SP1:-1.44648130568;ZNF148:-1.50452196308;GCM1,2:-1.54872817977;TFAP4:-1.63055208996;ESR1:-1.70016582324;TFCP2:-1.7474495171;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.84068082457;XCPE1{core}:-2.10208341033;PPARG:-2.30305740182 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10697-109G4;search_select_hide=table117:FF:10697-109G4 | |||
}} | }} | ||
Latest revision as of 14:33, 3 June 2020
| Name: | peripheral neuroectodermal tumor cell line:KU-SN |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11830 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11830
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11830
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.412 |
| 10 | 10 | 0.396 |
| 100 | 100 | 0.168 |
| 101 | 101 | 0.921 |
| 102 | 102 | 0.948 |
| 103 | 103 | 0.0492 |
| 104 | 104 | 0.456 |
| 105 | 105 | 0.26 |
| 106 | 106 | 0.00265 |
| 107 | 107 | 0.00518 |
| 108 | 108 | 0.613 |
| 109 | 109 | 0.0867 |
| 11 | 11 | 0.66 |
| 110 | 110 | 0.798 |
| 111 | 111 | 0.762 |
| 112 | 112 | 0.298 |
| 113 | 113 | 0.28 |
| 114 | 114 | 0.301 |
| 115 | 115 | 0.792 |
| 116 | 116 | 0.923 |
| 117 | 117 | 0.808 |
| 118 | 118 | 0.887 |
| 119 | 119 | 0.741 |
| 12 | 12 | 0.118 |
| 120 | 120 | 0.405 |
| 121 | 121 | 0.0359 |
| 122 | 122 | 0.0968 |
| 123 | 123 | 0.0208 |
| 124 | 124 | 0.396 |
| 125 | 125 | 0.829 |
| 126 | 126 | 0.466 |
| 127 | 127 | 0.315 |
| 128 | 128 | 0.105 |
| 129 | 129 | 0.208 |
| 13 | 13 | 0.876 |
| 130 | 130 | 0.934 |
| 131 | 131 | 0.389 |
| 132 | 132 | 0.397 |
| 133 | 133 | 0.882 |
| 134 | 134 | 0.814 |
| 135 | 135 | 0.0332 |
| 136 | 136 | 0.1 |
| 137 | 137 | 0.319 |
| 138 | 138 | 0.898 |
| 139 | 139 | 0.591 |
| 14 | 14 | 0.544 |
| 140 | 140 | 0.575 |
| 141 | 141 | 0.373 |
| 142 | 142 | 0.514 |
| 143 | 143 | 0.364 |
| 144 | 144 | 0.813 |
| 145 | 145 | 0.798 |
| 146 | 146 | 0.746 |
| 147 | 147 | 0.741 |
| 148 | 148 | 0.0972 |
| 149 | 149 | 0.186 |
| 15 | 15 | 0.958 |
| 150 | 150 | 0.334 |
| 151 | 151 | 0.658 |
| 152 | 152 | 0.00175 |
| 153 | 153 | 0.36 |
| 154 | 154 | 0.331 |
| 155 | 155 | 0.949 |
| 156 | 156 | 0.78 |
| 157 | 157 | 0.462 |
| 158 | 158 | 0.318 |
| 159 | 159 | 0.143 |
| 16 | 16 | 0.275 |
| 160 | 160 | 0.535 |
| 161 | 161 | 0.902 |
| 162 | 162 | 0.436 |
| 163 | 163 | 0.696 |
| 164 | 164 | 0.462 |
| 165 | 165 | 0.646 |
| 166 | 166 | 0.832 |
| 167 | 167 | 0.147 |
| 168 | 168 | 0.0988 |
| 169 | 169 | 0.0355 |
| 17 | 17 | 0.499 |
| 18 | 18 | 0.429 |
| 19 | 19 | 0.123 |
| 2 | 2 | 0.0888 |
| 20 | 20 | 0.48 |
| 21 | 21 | 0.95 |
| 22 | 22 | 0.0582 |
| 23 | 23 | 0.0657 |
| 24 | 24 | 0.521 |
| 25 | 25 | 0.613 |
| 26 | 26 | 0.356 |
| 27 | 27 | 0.68 |
| 28 | 28 | 0.933 |
| 29 | 29 | 0.564 |
| 3 | 3 | 0.837 |
| 30 | 30 | 0.0587 |
| 31 | 31 | 0.342 |
| 32 | 32 | 0.015 |
| 33 | 33 | 0.899 |
| 34 | 34 | 0.143 |
| 35 | 35 | 0.351 |
| 36 | 36 | 0.134 |
| 37 | 37 | 0.548 |
| 38 | 38 | 0.513 |
| 39 | 39 | 0.267 |
| 4 | 4 | 0.788 |
| 40 | 40 | 0.34 |
| 41 | 41 | 0.066 |
| 42 | 42 | 0.285 |
| 43 | 43 | 0.74 |
| 44 | 44 | 0.831 |
| 45 | 45 | 0.131 |
| 46 | 46 | 0.825 |
| 47 | 47 | 0.568 |
| 48 | 48 | 0.987 |
| 49 | 49 | 0.912 |
| 5 | 5 | 0.582 |
| 50 | 50 | 0.297 |
| 51 | 51 | 0.846 |
| 52 | 52 | 0.129 |
| 53 | 53 | 0.799 |
| 54 | 54 | 0.32 |
| 55 | 55 | 0.572 |
| 56 | 56 | 0.996 |
| 57 | 57 | 0.146 |
| 58 | 58 | 0.666 |
| 59 | 59 | 0.0549 |
| 6 | 6 | 0.673 |
| 60 | 60 | 0.141 |
| 61 | 61 | 0.915 |
| 62 | 62 | 0.475 |
| 63 | 63 | 0.71 |
| 64 | 64 | 0.705 |
| 65 | 65 | 0.214 |
| 66 | 66 | 0.414 |
| 67 | 67 | 0.0328 |
| 68 | 68 | 0.526 |
| 69 | 69 | 0.289 |
| 7 | 7 | 0.702 |
| 70 | 70 | 0.529 |
| 71 | 71 | 0.934 |
| 72 | 72 | 0.872 |
| 73 | 73 | 0.00684 |
| 74 | 74 | 0.303 |
| 75 | 75 | 0.538 |
| 76 | 76 | 0.429 |
| 77 | 77 | 0.0528 |
| 78 | 78 | 0.334 |
| 79 | 79 | 0.467 |
| 8 | 8 | 0.973 |
| 80 | 80 | 0.0103 |
| 81 | 81 | 0.553 |
| 82 | 82 | 0.514 |
| 83 | 83 | 0.627 |
| 84 | 84 | 0.732 |
| 85 | 85 | 0.0548 |
| 86 | 86 | 0.855 |
| 87 | 87 | 0.0742 |
| 88 | 88 | 0.25 |
| 89 | 89 | 0.229 |
| 9 | 9 | 0.119 |
| 90 | 90 | 0.198 |
| 91 | 91 | 0.155 |
| 92 | 92 | 0.572 |
| 93 | 93 | 0.153 |
| 94 | 94 | 0.892 |
| 95 | 95 | 0.882 |
| 96 | 96 | 0.672 |
| 97 | 97 | 0.811 |
| 98 | 98 | 0.31 |
| 99 | 99 | 0.61 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11830
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:171 neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0002346 neurectoderm
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
