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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004930
|accession_numbers=CAGE;DRX007781;DRR008653;DRZ000078;DRZ001463;DRZ011428;DRZ012813
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:0050687,DOID:1192,DOID:1115,DOID:3369
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:0050687,DOID:1192,DOID:1115,DOID:3369
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0104785,FF:0104201
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.70!49.20!EBF2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.72!HOXC5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.64!42.24!ZBED1;;chr1:197886461..197886558,+!p1@LHX9!1.59!37.77!LHX9;;chr1:170632285..170632309,+!p1@PRRX1!1.49!33.79!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.44!82.00!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!1.38!29.82!NFATC2;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!107.35!CREB3L1;;chr9:100615499..100615519,+!p1@FOXE1!1.34!20.87!FOXE1;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.33!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.29!18.39!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.36!PRRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.27!29.82!CREB3L1;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.90!HOXC10;;chr18:53068911..53068935,-!p4@TCF4!1.24!18.39!TCF4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!15.90!PRRX2;;chrX:591524..591527,+!p1@SHOX!1.19!14.41!SHOX;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.27!HIC1;;chr10:63809013..63809041,+!p3@ARID5B!1.17!77.03!ARID5B;;chr12:54393880..54393962,+!p1@HOXC9!1.17!13.92!HOXC9;;chr1:170632723..170632739,+!p8@PRRX1!1.17!13.92!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!1.17!13.92!FOXS1;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.39!STAT4;;chr1:170632959..170632987,+!p4@PRRX1!1.14!13.92!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.90!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.33!EBF1;;chr8:72756267..72756296,-!p4@MSC!1.08!16.40!MSC;;chr12:80085061..80085119,-!p6@PAWR!1.06!16.90!PAWR;;chr1:170633262..170633285,+!p3@PRRX1!1.06!11.93!PRRX1;;chr8:72756063..72756125,-!p1@MSC!1.05!20.87!MSC;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.44!HOXC8;;chr14:75745523..75745537,+!p1@FOS!1.01!1121.17!FOS;;chr6:85474299..85474324,-!p1@TBX18!1.01!16.90!TBX18;;chr19:45971246..45971265,+!p1@FOSB!1.00!172.45!FOSB;;chr8:72756667..72756736,-!p2@MSC!1.00!14.41!MSC;;chr1:170632683..170632696,+!p12@PRRX1!1.00!8.95!PRRX1;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.30!RUNX1;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.87!FOXC2;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.16!SNAI2;;chr2:119604456..119604501,-!p2@EN1!0.98!8.45!EN1;;chr2:119605214..119605230,-!p1@EN1!0.98!8.45!EN1;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.45!HOXC10;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!99.39!PLAGL1;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.95!SHOX2;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.24!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.92!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.36!OSR1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.95!7.95!HOXC5;;chr14:62162258..62162269,+!p2@HIF1A!0.94!76.53!HIF1A;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.44!TBX18;;chr19:45908292..45908374,-!p1@PPP1R13L!0.91!66.59!PPP1R13L;;chr8:72756213..72756243,-!p5@MSC!0.91!9.44!MSC;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.02!AEBP1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.90!73.05!GLIS2;;chr5:137804484..137804498,+!p2@EGR1!0.90!28.82!EGR1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.96!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!0.90!6.96!MEOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.96!PKNOX2;;chr14:61116183..61116208,-!p1@SIX1!0.89!26.84!SIX1;;chr18:19749517..19749531,+!p3@GATA6!0.89!12.42!GATA6;;chr19:16435625..16435682,+!p1@KLF2!0.88!223.14!KLF2;;chr8:72755987..72756002,-!p7@MSC!0.87!6.46!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.46!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.46!NPAS1;;chr8:49833978..49833996,-!p1@SNAI2!0.86!137.66!SNAI2;;chr8:72756023..72756055,-!p6@MSC!0.86!7.95!MSC;;chr3:71007886..71007887,-!p8@FOXP1!0.85!20.87!FOXP1;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.43!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.84!85.48!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.84!13.42!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.96!HOXC10;;chr3:71630980..71631110,-!p3@FOXP1!0.83!21.37!FOXP1;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.88!SMARCD3;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!15.90!ZFPM2;;chr3:5021268..5021282,+!p4@BHLHE40!0.82!11.93!BHLHE40;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.47!SIX2;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.47!HOXA9;;chr3:71007344..71007348,-!p6@FOXP1!0.80!22.86!FOXP1;;chr14:62203595..62203676,+!p4@HIF1A!0.80!10.44!HIF1A;;chr17:38256799..38256815,-!p3@NR1D1!0.80!9.94!NR1D1;;chr17:46126136..46126152,+!p1@NFE2L1!0.79!288.24!NFE2L1;;chr3:71007770..71007789,-!p9@FOXP1!0.78!13.92!FOXP1;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr2:192015750..192015793,-!p2@STAT4!0.78!6.96!STAT4;;chr2:176994408..176994492,+!p1@HOXD8!0.78!4.97!HOXD8;;chr12:54402790..54402805,+!p2@HOXC8!0.78!4.97!HOXC8;;chr1:170632250..170632277,+!p7@PRRX1!0.78!4.97!PRRX1;;chr5:158527104..158527135,-!p4@EBF1!0.78!4.97!EBF1;;chr9:100615546..100615558,+!p4@FOXE1!0.78!4.97!FOXE1;;chr9:100616439..100616476,+!p3@FOXE1!0.78!4.97!FOXE1;;chr16:31076332..31076388,-!p3@ZNF668!0.78!4.9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Line 36: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
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Line 44: Line 59:
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Line 59: Line 77:
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|sample_cell_line=Hs 863.T
Line 80: Line 99:
|top_motifs=HMGA1,2:2.89748083324;EVI1:2.3592989318;FOXL1:2.31946331479;UFEwm:2.192826375;IKZF1:2.12009295202;XBP1:2.04787390536;GLI1..3:1.91702862543;NKX3-1:1.91113144418;TAL1_TCF{3,4,12}:1.88840009976;NKX2-2,8:1.87448033778;HES1:1.84606241475;ESR1:1.7888216551;KLF4:1.72192794192;HOX{A5,B5}:1.68579654702;ZBTB16:1.64275305245;AIRE:1.62993447968;MYBL2:1.55583450544;NR3C1:1.54541118469;GCM1,2:1.50261857665;RXRA_VDR{dimer}:1.48635943107;PAX4:1.4753165519;TEAD1:1.45271952768;TEF:1.43608234594;GATA4:1.37356682675;RXR{A,B,G}:1.35819482022;HIF1A:1.31637578039;ADNP_IRX_SIX_ZHX:1.31249475603;HAND1,2:1.28572795389;SRF:1.23219657856;ZNF384:1.19883042387;HMX1:1.12018047528;NR6A1:1.09172403583;MAFB:1.07204446345;DBP:1.01241662094;TP53:0.962929360647;LHX3,4:0.95872676921;NFATC1..3:0.943902203926;NFE2L1:0.926437361301;EN1,2:0.918199575899;ALX4:0.891440059415;TFAP4:0.863844058837;HOX{A4,D4}:0.862345573057;TOPORS:0.858284400784;HLF:0.843615581303;GTF2A1,2:0.836425183236;HSF1,2:0.811887590276;ATF6:0.76897173684;TFCP2:0.763012804466;PRDM1:0.747595104483;SOX17:0.710071415359;MTE{core}:0.694848254747;FOXA2:0.665659820075;POU3F1..4:0.642919216187;EBF1:0.627008185068;TLX1..3_NFIC{dimer}:0.625887223291;XCPE1{core}:0.571256674369;TFAP2B:0.567398542345;HBP1_HMGB_SSRP1_UBTF:0.567088749466;NANOG{mouse}:0.560564692257;MAZ:0.556042607381;PAX1,9:0.54871439123;ZIC1..3:0.543364944684;NKX3-2:0.512181241063;TFAP2{A,C}:0.504415426074;GFI1B:0.487563656652;ZBTB6:0.48579016391;PAX8:0.457394841418;MZF1:0.446378700855;GTF2I:0.444901483591;PITX1..3:0.386290625581;SMAD1..7,9:0.366787886218;PPARG:0.324385890111;MEF2{A,B,C,D}:0.309768981069;HIC1:0.288676640371;IRF1,2:0.281290556926;FOXO1,3,4:0.273727527639;SPZ1:0.273258187926;FOXP1:0.257397067029;ZNF148:0.221080659574;HOX{A6,A7,B6,B7}:0.187570250885;VSX1,2:0.183496970854;NKX2-1,4:0.181138546328;STAT2,4,6:0.171176571188;ZNF423:0.108065414736;POU5F1:0.102510993072;ZNF238:0.0677510432161;AR:0.0657181027547;LEF1_TCF7_TCF7L1,2:0.0494432432357;IKZF2:0.046710842041;POU1F1:0.0370063239036;STAT5{A,B}:0.0106998919754;AHR_ARNT_ARNT2:-0.00589877968656;TBP:-0.0156528741594;CDC5L:-0.0215092880968;GZF1:-0.0278344719934;TBX4,5:-0.0309736012815;ARID5B:-0.0312919037138;TFDP1:-0.0320875126511;HNF1A:-0.0340074559244;FOXD3:-0.0466383265475;PATZ1:-0.0638266240989;MYFfamily:-0.0650527790806;PAX5:-0.0777339322046;EGR1..3:-0.0900627767267;RREB1:-0.0948844559024;RUNX1..3:-0.118182363313;PAX2:-0.145533312705;T:-0.148806626945;POU6F1:-0.156423754557;NFE2L2:-0.157727658709;ZFP161:-0.162724421798;CEBPA,B_DDIT3:-0.163016120902;MYB:-0.164178220871;MED-1{core}:-0.165256701116;PAX6:-0.178118935348;FOX{F1,F2,J1}:-0.193971066007;BACH2:-0.210943243066;NKX2-3_NKX2-5:-0.216511055172;NFIX:-0.223083898564;TLX2:-0.223765136352;CREB1:-0.223914336359;FOS_FOS{B,L1}_JUN{B,D}:-0.226122765858;REST:-0.286218226686;NHLH1,2:-0.294399329939;MTF1:-0.309117465062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.325809695658;ONECUT1,2:-0.325894076818;FOX{I1,J2}:-0.334537998212;FOXN1:-0.348147616677;FOSL2:-0.351227412163;TGIF1:-0.352156489302;NFIL3:-0.360152829124;RFX1:-0.371795772185;NFKB1_REL_RELA:-0.41994340209;ATF2:-0.444174260771;FOX{D1,D2}:-0.472710599775;NFE2:-0.495782347291;SOX2:-0.499404237039;ZNF143:-0.500482153184;SPI1:-0.51395070523;FOXP3:-0.517388919391;BPTF:-0.523516265043;CUX2:-0.549651409465;NKX6-1,2:-0.556866704041;EP300:-0.564821097047;SP1:-0.565202777429;ETS1,2:-0.568298573328;IRF7:-0.572906600045;PAX3,7:-0.592375165398;YY1:-0.598706286257;CDX1,2,4:-0.611300890332;DMAP1_NCOR{1,2}_SMARC:-0.619324962652;FOXM1:-0.619354997353;ELK1,4_GABP{A,B1}:-0.628829076512;NR5A1,2:-0.637322850118;SNAI1..3:-0.638517997493;NRF1:-0.640306748634;JUN:-0.641127501988;ATF4:-0.651904948865;NR1H4:-0.66608479112;BREu{core}:-0.667163473733;bHLH_family:-0.684554480837;OCT4_SOX2{dimer}:-0.703246766413;SOX5:-0.713785561477;ATF5_CREB3:-0.722300166602;GATA6:-0.727083850806;ZEB1:-0.750785784577;PRRX1,2:-0.771493885582;RORA:-0.786021265179;SPIB:-0.81051920464;LMO2:-0.815723625439;ESRRA:-0.816253496504;PDX1:-0.883022477361;STAT1,3:-0.911004361448;SREBF1,2:-0.911754052834;CRX:-0.931268654123;HNF4A_NR2F1,2:-0.939881667468;GFI1:-1.00521422784;HOXA9_MEIS1:-1.01397893803;SOX{8,9,10}:-1.03382741529;ELF1,2,4:-1.06314758642;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08078390466;E2F1..5:-1.10894073538;FOXQ1:-1.19143024179;NANOG:-1.46196675519;POU2F1..3:-1.52591566002;MYOD1:-1.57561153431;RFX2..5_RFXANK_RFXAP:-1.65057738771;ALX1:-1.66010067823;NFY{A,B,C}:-1.69362448497;PBX1:-1.73716482051;RBPJ:-2.2897169667
|top_motifs=HMGA1,2:2.89748083324;EVI1:2.3592989318;FOXL1:2.31946331479;UFEwm:2.192826375;IKZF1:2.12009295202;XBP1:2.04787390536;GLI1..3:1.91702862543;NKX3-1:1.91113144418;TAL1_TCF{3,4,12}:1.88840009976;NKX2-2,8:1.87448033778;HES1:1.84606241475;ESR1:1.7888216551;KLF4:1.72192794192;HOX{A5,B5}:1.68579654702;ZBTB16:1.64275305245;AIRE:1.62993447968;MYBL2:1.55583450544;NR3C1:1.54541118469;GCM1,2:1.50261857665;RXRA_VDR{dimer}:1.48635943107;PAX4:1.4753165519;TEAD1:1.45271952768;TEF:1.43608234594;GATA4:1.37356682675;RXR{A,B,G}:1.35819482022;HIF1A:1.31637578039;ADNP_IRX_SIX_ZHX:1.31249475603;HAND1,2:1.28572795389;SRF:1.23219657856;ZNF384:1.19883042387;HMX1:1.12018047528;NR6A1:1.09172403583;MAFB:1.07204446345;DBP:1.01241662094;TP53:0.962929360647;LHX3,4:0.95872676921;NFATC1..3:0.943902203926;NFE2L1:0.926437361301;EN1,2:0.918199575899;ALX4:0.891440059415;TFAP4:0.863844058837;HOX{A4,D4}:0.862345573057;TOPORS:0.858284400784;HLF:0.843615581303;GTF2A1,2:0.836425183236;HSF1,2:0.811887590276;ATF6:0.76897173684;TFCP2:0.763012804466;PRDM1:0.747595104483;SOX17:0.710071415359;MTE{core}:0.694848254747;FOXA2:0.665659820075;POU3F1..4:0.642919216187;EBF1:0.627008185068;TLX1..3_NFIC{dimer}:0.625887223291;XCPE1{core}:0.571256674369;TFAP2B:0.567398542345;HBP1_HMGB_SSRP1_UBTF:0.567088749466;NANOG{mouse}:0.560564692257;MAZ:0.556042607381;PAX1,9:0.54871439123;ZIC1..3:0.543364944684;NKX3-2:0.512181241063;TFAP2{A,C}:0.504415426074;GFI1B:0.487563656652;ZBTB6:0.48579016391;PAX8:0.457394841418;MZF1:0.446378700855;GTF2I:0.444901483591;PITX1..3:0.386290625581;SMAD1..7,9:0.366787886218;PPARG:0.324385890111;MEF2{A,B,C,D}:0.309768981069;HIC1:0.288676640371;IRF1,2:0.281290556926;FOXO1,3,4:0.273727527639;SPZ1:0.273258187926;FOXP1:0.257397067029;ZNF148:0.221080659574;HOX{A6,A7,B6,B7}:0.187570250885;VSX1,2:0.183496970854;NKX2-1,4:0.181138546328;STAT2,4,6:0.171176571188;ZNF423:0.108065414736;POU5F1:0.102510993072;ZNF238:0.0677510432161;AR:0.0657181027547;LEF1_TCF7_TCF7L1,2:0.0494432432357;IKZF2:0.046710842041;POU1F1:0.0370063239036;STAT5{A,B}:0.0106998919754;AHR_ARNT_ARNT2:-0.00589877968656;TBP:-0.0156528741594;CDC5L:-0.0215092880968;GZF1:-0.0278344719934;TBX4,5:-0.0309736012815;ARID5B:-0.0312919037138;TFDP1:-0.0320875126511;HNF1A:-0.0340074559244;FOXD3:-0.0466383265475;PATZ1:-0.0638266240989;MYFfamily:-0.0650527790806;PAX5:-0.0777339322046;EGR1..3:-0.0900627767267;RREB1:-0.0948844559024;RUNX1..3:-0.118182363313;PAX2:-0.145533312705;T:-0.148806626945;POU6F1:-0.156423754557;NFE2L2:-0.157727658709;ZFP161:-0.162724421798;CEBPA,B_DDIT3:-0.163016120902;MYB:-0.164178220871;MED-1{core}:-0.165256701116;PAX6:-0.178118935348;FOX{F1,F2,J1}:-0.193971066007;BACH2:-0.210943243066;NKX2-3_NKX2-5:-0.216511055172;NFIX:-0.223083898564;TLX2:-0.223765136352;CREB1:-0.223914336359;FOS_FOS{B,L1}_JUN{B,D}:-0.226122765858;REST:-0.286218226686;NHLH1,2:-0.294399329939;MTF1:-0.309117465062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.325809695658;ONECUT1,2:-0.325894076818;FOX{I1,J2}:-0.334537998212;FOXN1:-0.348147616677;FOSL2:-0.351227412163;TGIF1:-0.352156489302;NFIL3:-0.360152829124;RFX1:-0.371795772185;NFKB1_REL_RELA:-0.41994340209;ATF2:-0.444174260771;FOX{D1,D2}:-0.472710599775;NFE2:-0.495782347291;SOX2:-0.499404237039;ZNF143:-0.500482153184;SPI1:-0.51395070523;FOXP3:-0.517388919391;BPTF:-0.523516265043;CUX2:-0.549651409465;NKX6-1,2:-0.556866704041;EP300:-0.564821097047;SP1:-0.565202777429;ETS1,2:-0.568298573328;IRF7:-0.572906600045;PAX3,7:-0.592375165398;YY1:-0.598706286257;CDX1,2,4:-0.611300890332;DMAP1_NCOR{1,2}_SMARC:-0.619324962652;FOXM1:-0.619354997353;ELK1,4_GABP{A,B1}:-0.628829076512;NR5A1,2:-0.637322850118;SNAI1..3:-0.638517997493;NRF1:-0.640306748634;JUN:-0.641127501988;ATF4:-0.651904948865;NR1H4:-0.66608479112;BREu{core}:-0.667163473733;bHLH_family:-0.684554480837;OCT4_SOX2{dimer}:-0.703246766413;SOX5:-0.713785561477;ATF5_CREB3:-0.722300166602;GATA6:-0.727083850806;ZEB1:-0.750785784577;PRRX1,2:-0.771493885582;RORA:-0.786021265179;SPIB:-0.81051920464;LMO2:-0.815723625439;ESRRA:-0.816253496504;PDX1:-0.883022477361;STAT1,3:-0.911004361448;SREBF1,2:-0.911754052834;CRX:-0.931268654123;HNF4A_NR2F1,2:-0.939881667468;GFI1:-1.00521422784;HOXA9_MEIS1:-1.01397893803;SOX{8,9,10}:-1.03382741529;ELF1,2,4:-1.06314758642;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08078390466;E2F1..5:-1.10894073538;FOXQ1:-1.19143024179;NANOG:-1.46196675519;POU2F1..3:-1.52591566002;MYOD1:-1.57561153431;RFX2..5_RFXANK_RFXAP:-1.65057738771;ALX1:-1.66010067823;NFY{A,B,C}:-1.69362448497;PBX1:-1.73716482051;RBPJ:-2.2897169667
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10705-109H3;search_select_hide=table117:FF:10705-109H3
}}
}}

Latest revision as of 14:34, 3 June 2020

Name:Ewing's sarcoma cell line:Hs 863.T
Species:Human (Homo sapiens)
Library ID:CNhs11836
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stageNA
sexfemale
age5
cell typeosteoblast
cell lineHs 863.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004930
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11836 CAGE DRX007781 DRR008653
Accession ID Hg19

Library idBAMCTSS
CNhs11836 DRZ000078 DRZ001463
Accession ID Hg38

Library idBAMCTSS
CNhs11836 DRZ011428 DRZ012813
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0965
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.188
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.101
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.396
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.265
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.3
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.175
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.175
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.527
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0183
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.3
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.542
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.175
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.175
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.117
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.843
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.626
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.019
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.04
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.202
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.202
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11836

Jaspar motifP-value
MA0002.20.619
MA0003.10.896
MA0004.10.0644
MA0006.10.184
MA0007.10.468
MA0009.10.313
MA0014.10.13
MA0017.10.547
MA0018.22.28951e-4
MA0019.10.338
MA0024.19.92329e-6
MA0025.10.00214
MA0027.10.358
MA0028.12.62666e-5
MA0029.10.29
MA0030.10.0496
MA0031.10.0855
MA0035.20.0697
MA0038.12.04187e-4
MA0039.20.00237
MA0040.10.744
MA0041.10.315
MA0042.10.606
MA0043.12.29919e-5
MA0046.10.238
MA0047.20.193
MA0048.10.0229
MA0050.10.206
MA0051.10.193
MA0052.10.195
MA0055.10.768
MA0057.10.879
MA0058.10.00431
MA0059.10.726
MA0060.17.70217e-17
MA0061.10.171
MA0062.21.07912e-11
MA0065.20.856
MA0066.10.483
MA0067.10.013
MA0068.10.627
MA0069.10.135
MA0070.10.898
MA0071.10.817
MA0072.10.428
MA0073.10.852
MA0074.10.334
MA0076.14.99962e-6
MA0077.10.741
MA0078.10.704
MA0079.20.469
MA0080.25.51223e-8
MA0081.10.00154
MA0083.10.0749
MA0084.10.735
MA0087.10.888
MA0088.10.436
MA0090.12.06017e-5
MA0091.10.217
MA0092.10.0562
MA0093.10.0318
MA0099.28.48667e-4
MA0100.10.316
MA0101.10.00748
MA0102.20.00935
MA0103.10.0596
MA0104.20.00193
MA0105.10.567
MA0106.10.0773
MA0107.10.016
MA0108.20.386
MA0111.10.534
MA0112.20.00297
MA0113.10.256
MA0114.10.492
MA0115.10.12
MA0116.10.249
MA0117.10.201
MA0119.10.0207
MA0122.10.186
MA0124.10.158
MA0125.10.187
MA0131.10.204
MA0135.10.248
MA0136.12.93504e-12
MA0137.20.125
MA0138.20.316
MA0139.10.67
MA0140.10.322
MA0141.10.762
MA0142.10.13
MA0143.10.885
MA0144.10.574
MA0145.10.4
MA0146.10.774
MA0147.10.0412
MA0148.10.488
MA0149.10.893
MA0150.10.113
MA0152.10.0268
MA0153.10.519
MA0154.10.355
MA0155.10.491
MA0156.11.27473e-8
MA0157.10.514
MA0159.10.134
MA0160.10.178
MA0162.10.073
MA0163.10.00268
MA0164.10.625
MA0258.10.0584
MA0259.10.496



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11836

Novel motifP-value
10.316
100.384
1000.921
1010.902
1020.618
1030.302
1040.602
1050.198
1060.0324
1070.0155
1080.195
1090.683
110.365
1100.76
1110.345
1120.222
1130.146
1140.107
1150.155
1160.0458
1170.951
1180.893
1190.149
120.221
1200.788
1210.895
1220.0968
1230.375
1240.612
1250.55
1260.978
1270.897
1280.0886
1290.864
130.909
1300.193
1310.821
1320.24
1330.956
1340.813
1350.744
1360.447
1370.462
1380.776
1390.0382
140.309
1400.412
1410.78
1420.809
1430.685
1440.339
1450.467
1460.42
1470.151
1480.353
1490.00485
150.729
1500.174
1510.659
1520.0218
1530.242
1540.207
1550.229
1560.443
1570.365
1580.0524
1590.305
160.0178
1600.87
1610.495
1620.326
1630.851
1640.0159
1650.695
1660.0433
1670.615
1680.236
1690.0203
170.164
180.0449
190.0039
20.432
200.974
210.266
220.405
230.0899
240.345
250.517
260.272
270.872
280.647
290.375
30.373
300.966
310.448
322.42994e-17
330.965
340.925
350.844
360.0697
370.126
380.591
390.301
40.74
400.212
410.973
420.709
430.23
440.312
450.952
460.15
470.971
480.936
490.384
50.21
500.57
510.848
520.578
530.548
540.545
550.0313
560.852
570.287
580.791
590.12
60.522
600.506
610.342
620.397
630.131
640.906
650.394
660.183
670.565
680.968
690.397
70.437
700.062
710.185
720.934
730.0115
740.383
750.466
760.726
770.0454
780.977
790.00188
80.0321
800.548
810.36
820.0601
830.888
840.643
850.0257
860.725
870.643
880.568
890.211
90.746
900.331
910.541
920.031
930.963
940.334
950.54
960.333
970.475
980.613
990.0735



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11836


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
0050687 (cell type cancer)
1192 (peripheral nervous system neoplasm)
1115 (sarcoma)
3369 (peripheral primitive neuroectodermal tumor)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0104785 (Ewing's sarcoma family tumor cell line sample)
0104201 (Ewing's sarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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